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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1675 fasta sequence
[CTACAGCTTCTCTCCTTTTTTGGCCCAATGGAATTTCATATTGTGCTTGCGGAGGAGCTAGCGTCGCTACAACGGAAGTCACAGGTGGCGCATTCGAACGGTTTCTCGCCCGTATGCAACCGCACATGCGTTATTAAGGTCGATTTTCTTTTGAAGCTCTTGGCGCAATATTTGCACGAGAAATTTTTCGCCTCACTGTGCACCACCT-CCATGTGCCGATCGTACGAGCTTTTGTACGTGAAG-CCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGATCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGACTTTCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGTCCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGATGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGATCCTTTCGCCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGGAATTTTTGGAGTGTATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGTTTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGGTTTGTTTGCTCTTCGAGCAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTTTTCTACGCTTCGGCGACTTGTGCTTTAGCAGCTGTTGCAAAAAGGTGAAGCTCTGATTACAGCCACCACACTGATACTCTTCACAGGTTTCCCGATGCTGCTCTAAGATC-GTCTGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAAGCAAGGAGCCATTCCAATCGTTGGCGCTGTACAGCGTCAACCAGCACTTGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGTTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACCGGAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACTTTCTGCAGACCGG]
[+] EMBL CNS09M7I [CTACAGCTTCTCTCCTTTTTTGGCCCAATGGAATTTCATATTGTGCTTGCGGAGGAGCTAGCGTCGCTACAACGGAAGTCACAGGTGGCGCATTCGAACGGTTTCTCGCCCGTATGCAACCGCACATGCGTTATTAAGGTCGATTTTCTTTTGAAGCTCTTGGCGCAATATTTGCACGAGAAATTTTTCGCCTCACTGTGCACCACCT CCATGTGCCGATCGTACGAGCTTTTGTACGTGAAG CCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGATCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGACTTTCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGTCCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGATGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGATCCTTTCGCCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGGAATTTTTGGAGTGTATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGTTTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGGTTTGTTTGCTCTTCGAGCAGATTTTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTa ]
[-] EMBL BM589752 [ GCGCAATATTTGCACGAGAAATTTTTCGCCTCACTGTGCACCACCTCCCATGTGCCGATCGTACGAGCTTTTATACGTGAAGCCCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGATCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGACTTCCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGTCCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGATGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGATCCTTTCGTCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGGAATTTTTGGAGTGAATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGTTTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGATTTGTTTGATCTTCGAGTAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTTTTCTACGCTTCGG ]
[-] EMBL CNS09M7H [ TGGATGTCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCG TGCACACTGCACAACTCAATGGGTTTGTTTTCTC TCGAGCAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGATGCATTTTTCTACGCTTACACGACTTGTGCTTTAGCAGCTGTTGCAAAAAGGTGAAGCTCTGATTACAGCCACCACACTGATACTCTTCACAGGTTTCCCGATGCTGCTCTAAGATC GTCTGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAAGCAAGGAGCCATTCCAATCGTTGGCGCTGTACAGCGTCAACCAGCACTTGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGTTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTTGTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGG ]
[-] EMBL BM602946 [ GCTCTGATTACAGCCACCACACTGATACTCTTCACAGCTTTCCCGATGCTGCTCTAA ATCGGTCTGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAGGCAAGGAGCCATTCCAATCGTTGTCGCTGTATAGCGTCAACCAACACTTGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGGTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACCGG ]
[-] EMBL BM617760 [ TCGTGAGGATAAGGTATCATCTTCATGGGGCAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGTTCGTCCACTTCGTACAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCTCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTTGTTGGGAAAATTTCCGCCATCGTAAGATAACACAAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACTTTCTGCAGACCGG]
consensusID : consensus_7178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[GTTGTCGGCTGTATAGCGTCAACCAACACTTGGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGGTCGTCCACTTCGTACAAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACACAAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACCCACGCGTCCGCCCACGCGTCCGCGG]
[-] EMBL BM654126 [GTTGTCGGCTGTATAGCGTCAACCAACACTTGGCCACATCGTGAGGATAAGGTATCATCTTCATGGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATGGTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGTCTTCCAATTGGTCGTCCACTTCGTACAAAATATTCTTCGTCGCTATATTCGATTTTCTCAATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCATCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTGTTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCCACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACTTTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGCGCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACACAAACTCAAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACCCACGCGTCCGCCCACGCGTCCGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7178#0 CTACAGCTTCTCTCCTTTTTTGGCCCAATGGAATTTCATATTGTGCTTGCGGAGGAGCTA 60
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 GCGTCGCTACAACGGAAGTCACAGGTGGCGCATTCGAACGGTTTCTCGCCCGTATGCAAC 120
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 CGCACATGCGTTATTAAGGTCGATTTTCTTTTGAAGCTCTTGGCGCAATATTTGCACGAG 180
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 AAATTTTTCGCCTCACTGTGCACCACCTCCATGTGCCGATCGTACGAGCTTTTGTACGTG 240
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 AAGCCCCGCCTGCACGTATCGCAGTGGTACTTCGTCTGGCCACGGTGAACGGTTTCGTGA 300
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TCCACCAGCATGATGCGTTTGTTAAACCGGCGCCCACAGTACGAACAGCAGTACCGGGAC 360
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TTTCGTGCCCGGTGCGTGTTATGCGTGTGCTTGTCCAGCTTTGCCTGGGAGGTAAACTGT 420
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 CCATCGCACTGCGTGCATTGGTACAGCTCAATGGAAACGCCCGCATGTGCCGTTTCTAGA 480
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TGCTGCAGCAGCTCGCGATGGTACTTGAACTCGGTACGGCAGATGGTGCATTCGTTCGAT 540
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 CCTTTCGCCTGATTCGCTTCTTTGCATTCTTTCGACAAAGATGTTTGATTTTTCCGCGGG 600
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 AATTTTTGGAGTGTATGCAAGGCACGATGATGGCGGGCGGAGGCAAGCGAATAGAACTGT 660
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TTGGGGCACCGATCGCATCGATGCCACTTTACGTCGATCTCCTGGTGTGTTTCATGGATG 720
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TCCTCCGGCACTTCCTCATTGTAAGGGTATTCCTCGTTGCACACTGCACAACTCAATGGG 780
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TTTGTTTGCTCTTCGAGCAGATTGTCAGCGTTTAACAAGTGTTTAACATTTCGCAAACGA 840
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TGCATTTTTCTACGCTTCGGCGACTTGTGCTTTAGCAGCTGTTGCAAAAAGGTGAAGCTC 900
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TGATTACAGCCACCACACTGATACTCTTCACAGGTTTCCCGATGCTGCTCTAAGATCGTC 960
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TGCGACGCGAATACCTCCGAACAGTACAAGCATCCAAAACGGTTACCAAGCAAGGAGCCA 1020
consensus_7178#1 ------------------------------------------------------------
consensus_7178#0 TTCCAATCGTTGGCGCTGTACAGCGTCAACCAGCACTTG-CCACATCGTGAGGATAAGGT 1079
consensus_7178#1 -----GTTGTCGG--CTGTATAGCGTCAACCAACACTTGGCCACATCGTGAGGATAAGGT 53
* ** ** ***** *********** ****** ********************
consensus_7178#0 ATCATCTTCATGGGG-CAATTCTAGCTGCTCCCTGATAGGTTGATTGGAATCGAGCGATG 1138
consensus_7178#1 ATCATCTTCATGGGGGCAATTCTAGCTGCTCCCTGATAGGGCGATTGGAATCGAGGGATG 113
*************** ************************ ************* ****
consensus_7178#0 GTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGT 1198
consensus_7178#1 GTTCGCCGGCGGAATTAGTTTGTTTATCATCATTTTGCTCGTATGCAACCGAGTCCTCGT 173
************************************************************
consensus_7178#0 CTTCCAATTGTTCGTCCACTTCGTACAAA-TATTCTTCGTCGCTATATTCGATTTTCTCA 1257
consensus_7178#1 CTTCCAATTGGTCGTCCACTTCGTACAAAATATTCTTCGTCGCTATATTCGATTTTCTCA 233
********** ****************** ******************************
consensus_7178#0 ATGCAAAGGCCAAGTACAGTTGGTCCGGCTGGCACGTCGTTATCATCTTCCGATTTGGCA 1317
consensus_7178#1 ATGCAAAGGCCAAGTACAGTTGGTCCGGCCGGCACTTCGTTATCATCTTCCGATTTGGCA 293
***************************** ***** ************************
consensus_7178#0 TCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTG 1377
consensus_7178#1 TCATTATCCTGGTGGAATTGTGCTTCGTTTTGCTGCGATTGAAGGGCAAGGAAAAGCTTG 353
************************************************************
consensus_7178#0 TTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCC 1437
consensus_7178#1 TTGTTGCTTCGCATTTCACTAATAATGCTATAGACGATGGCGATGTTGTTTTCGCATTCC 413
************************************************************
consensus_7178#0 ACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACT 1497
consensus_7178#1 ACACAAATATTCGTATACGCATCCGACGGATGAATCTCCATTTCTAGCAGAGCTAGCACT 473
************************************************************
consensus_7178#0 TTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGC 1557
consensus_7178#1 TTGTTACGTTCTTCTTTGCAAATGAATGCGTCGAAAAAGCATCGCGTGGATGGATCCTGC 533
************************************************************
consensus_7178#0 GCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACCGGAACTC 1617
consensus_7178#1 GCCAAACAAAACCGGCAAGTGGTTGGGAAAATTTCCGCCATCGTAAAACAACACAAACTC 593
**************************************************** *****
consensus_7178#0 AAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACTT-----TCTGCAGAC 1672
consensus_7178#1 AAAGCACGCCACAAGCGTTGGGTACAGCTGCATGCAAAATTTACCCACGCGTCCGCCCAC 653
******************************************** ** ** **
consensus_7178#0 CGG------- 1675
consensus_7178#1 GCGTCCGCGG 663
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||