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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence
[CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACTCAGCAGGA]
[+] EMBL BM620571 [CCGGGAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTAAATAAAACTCAGCAGGA]
[+] EMBL BM596177 [ ccGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCTTCCCCTAAAAATACAgaa ]
consensusID : consensus_7187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 601 fasta sequence
[TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA]
[+] EMBL AF457553 [TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATTTAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA]
[+] EMBL CF541999 [ ATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAACAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGACTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTNTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATNAAAAACGTAACA TTAAAGCCTCCCCCTAAAAATACAGAAcn ]
[+] EMBL CF541518 [ ATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAATTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGANGCCGGACTACGAGCCCNATANCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGG ]
consensusID : consensus_7187#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC]
[+] EMBL BM586779 [CCGCCCACGCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAACTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACCATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACAGTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACGACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAGGCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACCGCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGACTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGGGCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7187#0 ------CCGG---GAGCATTGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAA 51
consensus_7187#2 --CCGCCCAC---GCGTCCGGAAGTAGACAACAACAAGAGGTGAAATGTACCGTCGCAAA 55
consensus_7187#1 TTCAGTCTATTTGAAGCATTGAAGCAGACAACAACAAGAGGTGAAATGTTCCGTCGCAAA 60
* * **** ************************ **********
consensus_7187#0 CTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACC 111
consensus_7187#2 CTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATATGTTGCAGATGCAATAACC 115
consensus_7187#1 TTGACACCTACAGTGGTCGTGGTTCTATTGTGCCTGACATTTGTTGCAGATGCACTAACC 120
*************************************** ************* *****
consensus_7187#0 ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACA 171
consensus_7187#2 ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAGCAACGGTATGGCGTAACA 175
consensus_7187#1 ATTCAGGAGCTGCGGGCCCAAATAGCCCAACAGCGCATTCAACAACGTTACGGCGTAACA 180
***************************************** ***** ** *********
consensus_7187#0 GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACC 231
consensus_7187#2 GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTACGACCGCAGCAACTACGACC 235
consensus_7187#1 GTGGCGACCACTAGCGCAGCAACTACGACCGCAGCAACTAC------------------- 221
*****************************************
consensus_7187#0 GCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 291
consensus_7187#2 GCAGCAACTACTAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 295
consensus_7187#1 -----------TAGCGCAGCAACTACTAGTGAGGCTACTACTACTGCTGCTGCATCTACG 270
*************************************************
consensus_7187#0 ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAG 351
consensus_7187#2 ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACCACCACCGAG 355
consensus_7187#1 ACACAAGCTTCCGACAGCGACAACACAACGACGACTGCCGAAGCAACGACTACCACCGAG 330
************************************************** *********
consensus_7187#0 GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 411
consensus_7187#2 GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 415
consensus_7187#1 GCCCAAACGACTTCCAGCTCGGACAACTCGACGACGACGGAAGCAGCGGCTACCACTACC 390
************************************************************
consensus_7187#0 GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGA 471
consensus_7187#2 GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGTGTTGAGGCCGGA 475
consensus_7187#1 GCGGCATCCGAAACCACTGCTGACTCTTCAAGCACCGGCACGACGAGCGTTGAGGCCGGA 450
*********************************************** ************
consensus_7187#0 CTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGG 531
consensus_7187#2 CTACGCGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAACGTGCCTTAGCCAGG 535
consensus_7187#1 CTACGAGCCCAATACCGTGATCAAGTACGGCAGCAAGCGATCGAGCGTGCCTTAGCCAGG 510
***** ************************************** ***************
consensus_7187#0 GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATT 591
consensus_7187#2 GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAAC--- 592
consensus_7187#1 GCTGCCGCGTTTGGTTAAGCGCTTTCGGCAGACCAAAAACTGAATTAAAAACGTAACATT 570
*********************************************************
consensus_7187#0 TAAAGCTTCCCCTAAAAATACAAGCTCATAACCGAAACCGAAAGTACGTAATCTAATCTA 651
consensus_7187#2 ------------------------------------------------------------
consensus_7187#1 TAAAGCCTCCCCCAAAAAAAAAAAAAAAAAA----------------------------- 601
consensus_7187#0 AATAAAACTCAGCAGGA 668
consensus_7187#2 -----------------
consensus_7187#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||