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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 804 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTG-AGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACCGTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACACACACACACGATGTATTTCTACAAAC]
[+] EMBL BM608832 [CCGCCCACGCGTCCGCCCACGCGTCCGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTG AGACGGGGTGTGCATTGTTT ]
[+] EMBL BM584984 [ ccgCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTG AGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACCGTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACAC ]
[+] EMBL BM655076 [ ccgGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTGAAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACCGTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACACACACACACGATGTATTTCTACAAAC]
consensusID : consensus_7190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGCCCACGCGTCCGGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAA]
[+] EMBL BM588745 [CCGCCCACGCGTCCGGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGTTGCCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTGGCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACCGTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAA]
consensusID : consensus_7190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 538 fasta sequence
[CCGGTCAGAAATCATACGTAGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGGTTGCCATC]
[+] EMBL BM585899 [CCGGTCAGAAATCATACGTAGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGGTTGCCATC]
[+] EMBL BM583698 [ ccgGAAACCGTTTCGCAGTTCGCCAGACAGGACGAGAGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGTATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGCCCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCGTCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTCTTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTGGTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTGATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGAGGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7190#0 CCGCCCACGCGTCCGCCCACGCGTCCGAAACCGTTTCGCAGTTCGC-CAGACAGGACGAG 59
consensus_7190#1 --------------------------------------CCGCCCACGCGTCCGGGACGAG 22
consensus_7190#2 ------CCGGTCAGAAATCATACGTAGAAACCGTTTCGCAGTTCGC-CAGACAGGACGAG 53
* * * * * * *******
consensus_7190#0 AGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGT 119
consensus_7190#1 AGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGT 82
consensus_7190#2 AGTGGTTTAATCGCGCGATTATTCCATCCAGTACGGGCTACATTGGGCAGTGTTCCGGGT 113
************************************************************
consensus_7190#0 ATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGC 179
consensus_7190#1 ATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGC 142
consensus_7190#2 ATTTTCCACTTCTCGTTTGGTATCGTTGCTGGCAGACCGGGCAGAAGTAGAATTCTTTGC 173
************************************************************
consensus_7190#0 CCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCG 239
consensus_7190#1 CCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCG 202
consensus_7190#2 CCGCATAGGAGAAGCACCACTCCACCACATCCTGCCTGCGTGTGATGATACTTTCTCCCG 233
************************************************************
consensus_7190#0 TCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTC 299
consensus_7190#1 TCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTC 262
consensus_7190#2 TCTTCGGTGTCTCGCCGTGTCGCTGCTGACGGGGAGCGGTGCGCTTTTTTTGTTGCTTTC 293
************************************************************
consensus_7190#0 TTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTG 359
consensus_7190#1 TTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTG 322
consensus_7190#2 TTTTCGCGTGTGTCCAGGTGCTGACCGAAGCTTGGCGAAGCTGGCCACATCCGCTCGGTG 353
************************************************************
consensus_7190#0 GTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTG 419
consensus_7190#1 GTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTG 382
consensus_7190#2 GTTGATTCATGGTCAGCGGTGAAGAAAAGAAAATTCTGTATCGTTCTCGCGTACAAAGTG 413
************************************************************
consensus_7190#0 ATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGA 479
consensus_7190#1 ATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGA 442
consensus_7190#2 ATGCGGCACTGTGCGTGAAGTTCCCGCTGCGTGTGTGTGAAGATATTTGACGGAAGTTGA 473
************************************************************
consensus_7190#0 GGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACG-TTG 538
consensus_7190#1 GGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACG-TTG 501
consensus_7190#2 GGTGGTGCTATTGCGGTGCTGCCTTCCCCTCCCACCCCATAGTTGCGCTCGACACGGTTG 533
******************************************************** ***
consensus_7190#0 CCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTG 598
consensus_7190#1 CCATCTCCAATTAGGGCCACCTGTGAAAAGGCGTGCGATGGTGGTGTAAAGCAAAAATTG 561
consensus_7190#2 CCATC------------------------------------------------------- 538
*****
consensus_7190#0 GCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACC 658
consensus_7190#1 GCCAAAAGTGCAGTGAGAAGATACGCCGTGAGCAATCGTTGTGCCAGTGTTCCGAAAACC 621
consensus_7190#2 ------------------------------------------------------------
consensus_7190#0 GTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAACC 718
consensus_7190#1 GTTCCTGCCGTCTGAGACGGGGTGTGCATTGTTTTCGTCTAGCACCCTTCCCGGCGAA-- 679
consensus_7190#2 ------------------------------------------------------------
consensus_7190#0 GTATCGCGCGGAGTGTGAACCGATTCTAAAGAACTGCAGCACCCCCGCTCGAAGAACACA 778
consensus_7190#1 ------------------------------------------------------------
consensus_7190#2 ------------------------------------------------------------
consensus_7190#0 CACACACACGATGTATTTCTACAAAC 804
consensus_7190#1 --------------------------
consensus_7190#2 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||