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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1076 fasta sequence
[GCACCTGTACGCGGCCCACTTCCGCGAGGTCTCCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCTACCACCGCCACGCCGAACAGCAGCTGCAGTGGTGCGGACAACAATAATAGCAACAGCAGTAGTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCGACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATAGTAATAGTCATAATCATCACCCGCACCATCACCACAACCATCCCCATCACCATCATCACCATCATCCGGGTAAGATGGAATCGTCCTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCAGCAGCACCGGCAGCGTTGGGGTGAGCGGATGCGGCGTCGGTTACAGCGTCGTTGGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCGGGGCCAGTTCGCAGCAGTCGTCCAACACGCAGACAACGGCATAGTGGATACGCTGGACTGCGAGTGTTGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGCGGCGTGCTGTGGGGCCCTCCAGGTGCCCACCCAAATCTGACCAAAATGTGATCTTAAAAAAAAAAACAAAAAACAAAACAAAAAAAAAACACACACAAGCATACGTGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACAAGCGCGTGTGT]
[+] EMBL BX608703 [GCACCTGTACGCGGCCCACTTCCGCGAGGTCTCCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCTACCACCGCCACGCCGAACAGCAGCTGCAGTGGTGCGGACAACAATAATAGCAACAGCAGTAGTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCGACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATAGTAATAGTCATAATCATCACCCGCACCATCACCACAACCATCCCCATCACCATCATCACCAT ]
[+] EMBL BM604877 [ ccgGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTTGTCGCCGCACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCTACCACCGCCACGCCGAACAGCAGCTGCAGTGGTGCGGACAACAATAATAGCAACAGCAGTAGTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCGACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATAGTAATAGTCATAATCATCACCCGCACCATCACCACAACCATCCCCATCACCATCATCACCATCATCCGGGTAAGATGGAATCGTCCTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCAGCAGCACCGGCAGCGTTGGGGTGAGCGGATGCGGCGTCGGTTACAGCGTCGTTGGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCGGGGCCAGTTCGCAGCAGTCGTCCAACACGCAGACAACGGCATAGTGGATACGCTGGACTGCGAGTGTTGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGCGGCGTGCTGTGGGGCCCTCCAGG ]
[+] EMBL BM576504 [ ccGATGGAATCGTCCTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCAGCAGCACCGGCAGCGTTGGGGTGAGCGGATGCGGCGTCGGTTACAGCGTCGTTGGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCGGGGCCAGTTCGCAGCAGTCGTCCAACACGCAGACAACGGCATAGTGGATACGCTGGACTGCGAGTGTTGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGCGGCGTGCTGTGGGGCCCTCCAGGTGCCCACCCAAATCTGACCAAAATGTGATCTTAAAAAAAAAAACAAAAAACAAAACAAAAAAAAAACACACACAAGCATACGTGGAAAAAGGATGTGAAGCGAAAGGTGGCAAACACACACACACACACAAGCGCGTGTGT]
consensusID : consensus_7198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1016 fasta sequence
[TGATTTGGGCACCCCGAAGAACTGATCTATGGCGTTTATGTGTGTGTTATGTTTGTGAATGAAAAATGAAGTGCGAGGTGGAGCGTGTTAAGTGAGTGATCGTTCGATGATGATGATCCTGTTGGTGTTGTGATCGCTCTTTAACAACAAACCAGGCTCCCAATAGCGACAAGTCGTCACAAACAAATCAGTGTCATTCACTCACTCCCTTACGTTTTAAGACGACTATGGACGGTGGTGGCGGTGGTCGCTTCTCCAAGATGTGGACCACGGCCGTGCTGAACGCGATCACGAGCCGGGCGACGTCCGCCTCGAAGAACCTGTCCGTGCGCTACTCGTCCATACCGAGCAATGAGGGTGGACCGTCCGCCTCGGCCAGCAATCTCAGCAAGATCATGGGCGGGTCCGGCATCATACTGCCGCTGGACGTAGAGGAAACGGTGACATGTTTCTGCAGAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGTTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCAGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCACCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCC]
[+] EMBL BM638961 [TGATTTGGGCACCCCGAAGAACTGATCTATGGCGTTTATGTGTGTGTTATGTTTGTGAATGAAAAATGAAGTGCGAGGTGGAGCGTGTTAAGTGAGTGATCGTTCGATGATGATGATCCTGTTGGTGTTGTGATCGCTCTTTAACAACAAACCAGGCTCCCAATAGCGACAAGTCGTCACAAACAAATCAGTGTCATTCACTCACTCCCTTACGTTTTAAGACGACTATGGACGGTGGTGGCGGTGGTCGCTTCTCCAAGATGTGGACCACGGCCGTGCTGAACGCGATCACGAGCCGGGCGACGTCCGCCTCGAAGAACCTGTCCGTGCGCTACTCGTCCATACCGAGCAATGAGGGTGGACCGTCCGCCTCGGCCAGCAATCTCAGCAAGATCATGGGCGGGTCCGGCATCATACTGCCGCTGGACGTAGAGGAAACGGTGACATGTTTCTGCAGAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGTTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCAGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCA ]
[+] EMBL BX605399 [ GCGGAAGCTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCACCATGCTCGGGCTGCACGCGCATCTTAACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGCCCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTTCCTGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCGCCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCC]
consensusID : consensus_7198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence
[GCAGAATCNCCACGAGGAAAGTGTGTACGAGCGTGCGTCACCATCCAAGCTGGGCCTGATCGAGTGTATACTGTACCTGCGGAAGCCTATGTGGCAGGTGGGCATCGTACCGGCAAAGCTGACTGACGCACTCGGGTCGCTCGTGCGCTATGCTCAGGAATCTCTCAACATCTTCTTCTGCCCGACAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGCTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCAACCTCGTGTACGGTACCATCAGTGAATTCTGCACTACATCCGGCTGTCCAGACATGACCGGCCCAGGAACTAGGATGTACCTCTGGTTCGACGAGAAGGGCAAGAAGACGCGGGTGGCCGGCCCACAGTACATCGACTACGTGATGACGGTTCACGCAGAAACGGTCAGCGACGAGTCGATCTTTCCCACCAAATATGCCAATGAGTTCCCTAGTTCGTTCGAGAGCATCGCGGCGGCCAAAATCGTCCGCCTGCTGTTCCATGTGATCGCGCACCTGTACGGCGGCCACTTTCGGGAAAGGGTCACACATTGCCTTCGGGGGCTTGGAACAGCGCGGCCATTCGTTTAACCGTCAACCCTTTTCGGGCAATTCTACCCGGGGTTCCATTAGGGCGGACATTTAANTCCTGATTAGGAAANCCCANGAAGNAGAGCACCAGGAGTTGGCTGCGG]
[+] EMBL BX467508 [GCAGAATCNCCACGAGGAAAGTGTGTACGAGCGTGCGTCACCATCCAAGCTGGGCCTGATCGAGTGTATACTGTACCTGCGGAAGCCTATGTGGCAGGTGGGCATCGTACCGGCAAAGCTGACTGACGCACTCGGGTCGCTCGTGCGCTATGCTCAGGAATCTCTCAACATCTTCTTCTGCCCGACAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGACACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGCTACCGGATGCGGACCTGCGATTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGAATGGCTAGCATCGCACACCCTTGCGCTGTTCGAGCACGTCAACCTCGTGTACGGTACCATCAGTGAATTCTGCACTACATCCGGCTGTCCAGACATGACCGGCCCAGGAACTAGGATGTACCTCTGGTTCGACGAGAAGGGCAAGAAGACGCGGGTGGCCGGCCCACAGTACATCGACTACGTGATGACGGTTCACGCAGAAACGGTCAGCGACGAGTCGATCTTTCCCACCAAATATGCCAATGAGTTCCCTAGTTCGTTCGAGAGCATCGCGGCGGCCAAAATCGTCCGCCTGCTGTTCCATGTGATCGCGCACCTGTACGGCGGCCACTTTCGGGAAAGGGTCACACATTGCCTTCGGGGGCTTGGAACAGCGCGGCCATTCGTTTAACCGTCAACCCTTTTCGGGCAATTCTACCCGGGGTTCCATTAGGGCGGACATTTAANTCCTGATTAGGAAANCCCANGAAGNAGAGCACCAGGAGTTGGCTGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7198#0 GCACCTGTACGCGGCCCACTT-CCGCGAGGTCTCCATGCTCGGGCTGCACGCGCATCTTA 59
consensus_7198#1 -----------TGATTTGGGCACCCCGAAGAACTGATCTATGGCGTTTATGTGTGTGTTA 49
consensus_7198#2 ------------------------------------------------------------
consensus_7198#0 ACCTCACCTTCGCGCATCTCACCGCGTTCCATAGGCGATTTAATCTGATAGAACCCAAAG 119
consensus_7198#1 TGTTTGTGAATGAAAAATGAAGTGCGAGGTG-GAGCGTGTTAAG-TGAGTGATCGTTCGA 107
consensus_7198#2 ------------------------------------------------------------
consensus_7198#0 AGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTGACGGACGATCCGACGGCGC 179
consensus_7198#1 TGATGATGATCCTGT-TGGTGTTGTGATCGCTCTTTAAC-----AACAAACCAG----GC 157
consensus_7198#2 ------------------------------------------------------------
consensus_7198#0 CCGCGGTCACCACCGGCGCCGACGGCAAGGCGGACAGTAGTGCCTCGATCGCGTCCACGA 239
consensus_7198#1 TCCCAATAGCGACAAGTCGTCACAAACAAATCAGTGTCATTCACTCACTCCCTTACGTT- 216
consensus_7198#2 ------------------------------------------------------------
consensus_7198#0 CCTCGGCCTCGACCGGCACGACCAACACGTGCTCGTCCTCGTCCACGTCCTCGACCGCTT 299
consensus_7198#1 TTAAGACGACTATGGACGGTGGTGGCG-GTGGTCG--CTTCTCCAAGATGTGGACCACGG 273
consensus_7198#2 ---------------------------------------------------GCAGAATCN 9
*
consensus_7198#0 CC-TGCTCGCCGCCGCTACTCCTAACCGCCGCTGCAGCCGCCGCCTCCTCTACCGTGCCG 358
consensus_7198#1 CCGTGCTGAACGCGATCA---CGAGCCGG----GCGACGTCCGCCTCGAAGAACCTGTCC 326
consensus_7198#2 CCACGAGGAAAGTGTGTA---CGAGCG-----TGCGTCACCATCCAAGCTGGGCCTGATC 61
** * * * * * * ** * * ** * **
consensus_7198#0 CCGCCGTCGTCGTCGCCACACCCGAACAACGGTACGATCCTGCCTCCCTCCTCCTCCTCT 418
consensus_7198#1 GTGCGCTACTCGT--CCATACC-GAGCAATGAGGGTGGACCGTCCGCCTCGGCCAGCAAT 383
consensus_7198#2 GAGTGTATACTGTACCTGCGGA-AGCCTATGTGGCAGGTGGGCATCGTACCGGCAAAGCT 120
* ** * * * * * * * *
consensus_7198#0 ACCACCGCCACGCCGAACAGCAGCTGCA--GTGGTGCGGACAACAATAATAGCAACAGCA 476
consensus_7198#1 CTCAGCAAGATCATGGGCGGGTCCGGCATCATACTGCCGCTGGACGTAGAGGAAACGGTG 443
consensus_7198#2 GACTGACGCACT-CGGGTCGCTCGTGCGCTATGCT-----CAGGAATC-TCTCAACATCT 173
* * * * ** * * * ***
consensus_7198#0 GTA-GTGATAGTGGTGCCGCCGGCCACGCGAACCACCACGCGCTCATCGATGGGGACGCG 535
consensus_7198#1 ACATGTTTCTGCAGAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGAC 503
consensus_7198#2 TCTTCTGCCCG-ACAAAAGCCCGACGCAAGGAACGAGACGGAGATTCGAATCAGGGCGAC 232
* * *** * * * * * * *** ** ** **
consensus_7198#0 ACGGCCCAGCCGATCTGCAAGCAGCCGCTCGAATCGGGCAGCGTCGTTGTAAATA-GTAA 594
consensus_7198#1 ACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGTTACCGGATGCGGACCTGCGA 563
consensus_7198#2 ACAAAGCTTTACCTCGAGGAAGGGCTGCTAGAGCGGAAGCTACCGGATGCGGACCTGCGA 292
** * ** * ** *** ** * * ** * * *
consensus_7198#0 TAGTCATAATCATCACCCGCACCATC--ACCACAACCATCCCCATCACCATCATCACCAT 652
consensus_7198#1 TTACTAGTGGATCTACCGGCAGGCTTGGACTACAACGA-----ATGGCTAGCATCGCACA 618
consensus_7198#2 TTACTAGTGGATCTACCGGCCGGCTTGGACTACAACGA-----ATGGCTAGCATCGCACA 347
* * *** ** * ** ***** * ** * * **** *
consensus_7198#0 CATCCGGGTAAGATGGAATCGTC--CTGTGCGACCGGTGGTGGTGGCGGCGGCAGTGGCA 710
consensus_7198#1 CCCTTGCGCTGTTCGAGCACGTCA-CCATGCT-CGGGCTGCACGCGCATCT-TAACCTCA 675
consensus_7198#2 CCCTTGCGCTGTTCGAGCACGTCAACCTCGTGTACGGTACCATCAGTGAATTCTGCACTA 407
* * * * **** * * ** * *
consensus_7198#0 GCAGCACCGGCAGCGTTGGGGTGAGCGGATGC-----GGCGTCG-GTT-ACAGCGTCGTT 763
consensus_7198#1 CCTTCGCGCATCTCACCGCGTT--CCATAGGC-----GATTTAA-TCTGATAGAACCCAA 727
consensus_7198#2 CATCCGGCTGTCCAGACATGACCGGCCCAGGAACTAGGATGTACCTCTGGTTCGACGAGA 467
* * * * * * * *
consensus_7198#0 GGAGGGGGAGGCGGCGGTGGAGGTGGCGGTGGACATTCGGGCG---G-GGCCAGTTC--- 816
consensus_7198#1 AGAGACAGAAGTGCTGCGCGATCTGGAGATTGCGCTCCGCCTG---ACGGACGATCC--- 781
consensus_7198#2 AGGGCAAGAAGACGCGGGTGGCCGGCCCACAGTACATCGACTACGTGATGACGGTTCACG 527
* * ** * * * * * ** * * * *
consensus_7198#0 --GCAGCAGTCGTCCAACA------CGCAGACAACGGCATAGTGGATACGCTGGACTGCG 868
consensus_7198#1 --GACGGCGCCCGCGGTCA------C-----CACCGGCGCCGACGGCAAGGCGGACAGT- 827
consensus_7198#2 CAGAAACGGTCAGCGACGAGTCGATCTTTCCCACCAAATATGCCAATGAGTTCCCTAGTT 587
* * * * * * ** * * * *
consensus_7198#0 AGTGT-----TGGGGCCGGCGCCGGAACCATGTTCCTGCTGGGCGGGGC-GGCGTGCTGT 922
consensus_7198#1 AGTGC-----CTCGATCGCGTCCACGACCTCGGCCTCGACCGGCACGACCAACACGTGCT 882
consensus_7198#2 CGTTCGAGAGCATCGCGGCGGCCAAAATCGTCCGCCTGCTGTTCCATGTGATCGCGCACC 647
** * ** * * * * * * *
consensus_7198#0 GGGGCC-C-TCCAGGTGCCCACCCAAATCTGAC-CAAAATGTGATCTTAAAAAAAAAAAC 979
consensus_7198#1 CGTCCT-CGTCCACGTCCTCGACCGCTTCCTGC-TCGCCGCCGCTACTCCTAACCGCCGC 940
consensus_7198#2 TGTACGGCGGCCACTTTCGGGAAAGGGTCACACATTGCCTTCGGGGGCTTGGAACAGCGC 707
* * * *** * * ** * * * *
consensus_7198#0 AAAAAAC------AAAACAAAAAAAAAACACACACAAGCATACGTGGAAAAAGGATG-TG 1032
consensus_7198#1 TGCAGCC------GCCGCCTCCTCTAC-CGTGCCGCCGCCGTCGTCGTCGCCACACC-CG 992
consensus_7198#2 GGCCATTCGTTTAACCGTCAACCCTTTTCGGGCAATTCTACCCGGGGTTCCATTAGGGCG 767
* * ** * * *
consensus_7198#0 AAGCGAAAGGTGGCAAACACACACACACACACAAGCGCGTGTGT-------------- 1076
consensus_7198#1 AAC--AACGGTA-CGATCCTGCCTCCC------------------------------- 1016
consensus_7198#2 GACATTTAANTCCTGATTAGGAAANCCCANGAAGNAGAGCACCAGGAGTTGGCTGCGG 825
* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||