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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1123 fasta sequence
[TTTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGGGGAGAGGGCAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTACTACGTGAAGCAAGGGTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAACAAAAAGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCACAACATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCA-TTTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATGATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAACAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCTAATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAGTCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAATTTGGAAACTAACAATAGAGATGAGTCATATAAAAAAAAAAAC]
[+] EMBL BX628899 [TTTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGGGGAGAGGGCAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTACTACGTGAAGCAAGGGTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAACAAAAAGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCACAACATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCA TTTTTTNNTATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGA ]
[+] EMBL BX616526 [ TTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGAGGAGAGGGCAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTACTACGTGAAGCAAGGTTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAACAAAACGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCGCAACATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCAT ]
[+] EMBL BX619674 [ ACTTATTTTAGCTGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCA TTTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAG ]
[+] EMBL BX609341 [ CCAAGATCAAGAACATGCACTGGTGAGTTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATGATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAACAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCTAATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAGTCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAATTTGGAAACTAACAATAGAGATGAGTCATATAAAAAAAAAAAC]
[+] EMBL BM576826 [ ccgTGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATGATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAACAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCTAATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAGTCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAATTTGGA ]
consensusID : consensus_7205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[CCGGAGGAATATGATAAGGAAAGGCAAGGATATGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATGAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAAT]
[+] EMBL BM639626 [CCGGAGGAATATGATAAGGAAAGGCAAGGATATGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTCATATATACATGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTTTAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGGATGAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAAACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACATTGTGTAATATGCGTATCGAAGAGATGAGATAGCTGAACATAATTCATCCTAGATGAGCACATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCAAGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAACTTGTAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7205#0 TTTGAGGGCAATGTTTCGATATGATGAGTGTGTTTGTGTGTTTGTGTGATGGGGAGAGGG 60
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 CAACAACCCCTTTTCCCAGAAGCGAAATGATTAAAAGATGAGAGAGCAGTAACGATCGTA 120
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 CTACGTGAAGCAAGGGTTTATTTGGATTTGGATTATTTGTTAGCATTAGTTGTATTAAAC 180
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 AAAAAGATTGCAATTCTAATCCTCTTTTCATCCCTGTTGGTGATGTGTGACACGCACAAC 240
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 ATCAATGCTTTTTTCTTGTTTGTTTTCGTTTAACTCAATCGAGTGCAAACTTATTTTAGC 300
consensus_7205#1 ------------------------CCGGAGGAATATGAT--AAGGAAAGGCAAGGATA-- 32
* ** ** * * ** * **
consensus_7205#0 TGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTTTCATATATACA 360
consensus_7205#1 TGAAATAGTCTATATTAATATAGTTAACGATTTTATAAAACCATTTTTT-CATATATACA 91
************************************************* **********
consensus_7205#0 TGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTT 420
consensus_7205#1 TGTATACATATAGGTATGTTTTTATGTATGCATTATTAAAGTCTTTCTTTTAGTTTGTTT 151
************************************************************
consensus_7205#0 TAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGG 480
consensus_7205#1 TAGTAGCAAGAGTGGTAAGAAAATCTGTGTGTTTGTTAAGAAAAAGTCGAATAACAATGG 211
************************************************************
consensus_7205#0 ATTAATTAAGCGTAACGCCAAGATCAAGAACATGCACTGGTGAGCTCATCATTTCATGAA 540
consensus_7205#1 ATGAATTAAGCGTAACGCCAAGATCAAGAACACGCACTGGTGAGCTCATCATTTCATGAA 271
** ***************************** ***************************
consensus_7205#0 ACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACAT 600
consensus_7205#1 ACCATCCACAATCATCTAATAAAAGAAAAAGCGAGTTGAGTTAAACTAAATACAAAACAT 331
************************************************************
consensus_7205#0 TGTGTAATATGCGTATCGAAGAGATGAGGATAGCTGAACATAATTCATCCTAGATGAGCA 660
consensus_7205#1 TGTGTAATATGCGTATCGAAGAGATGAG-ATAGCTGAACATAATTCATCCTAGATGAGCA 390
**************************** *******************************
consensus_7205#0 CATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCA 720
consensus_7205#1 CATCATTATTGCGAACAAAATTGAAATGCTGAGTGTGTAAACGTATTTACAGTAACACCA 450
************************************************************
consensus_7205#0 AGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAA 780
consensus_7205#1 AGATTGCAGAAATTGCGCAAAAAAGGGTAATTATCTTTCTTTTACTAAATCATCGCACAA 510
************************************************************
consensus_7205#0 CTTGTAAAATCTGAAGTGTTGGAAAGTAACTGGTGAGAAGAGCGTAGCGGGATTTGAATG 840
consensus_7205#1 CTTGTAAAAT-------------------------------------------------- 520
**********
consensus_7205#0 ATTGTGCTCGTTCGGGAACGTTTGTAATTCGTAATATGATTGTAATGCAAAAGTACACAA 900
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 CAGGTCTGAGTAAAATATGTAGTCTTTACGCAAACTTACGCCATATTATACAAAGCAGCT 960
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 AATGAAGTGGAAAGAAAACAAAAAGGAAGGAAGCAAAAAGAAACGCTGAAAATTGTTAAG 1020
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 TCGACAAAAGGAAAAGAAGACAAACTGAGGAATATGATAAGGAAAGGCAAGGATATGAAA 1080
consensus_7205#1 ------------------------------------------------------------
consensus_7205#0 TTTGGAAACTAACAATAGAGATGAGTCATATAAAAAAAAAAAC 1123
consensus_7205#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||