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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 957 fasta sequence
[CCACCACCCATCCCTACGCAGAATGCCCGAGNNATCACTAACTTGAATCGACTCTTTCTTCCAAACTCCCGGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGCAACTGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACAAAGCCAGCNCAAGCAAAAGGGTGGGCCTAAAACCCCCGAAGTACAGCATACGGCACCGCTCGCTCGTCTGTGACGATCGGTACGGAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCG-AT--TTTGAGAAGC-TGCTCG-AGCTTCCCGC-ATCGAGTGCGAGCCACTTTCTGCTTAGCTCGGAGAAAC-GCTGGCTACAACCGGACACCGATCTACC-GGGCGAGGATGAAAAGAACCGCTACAGTGAGTACTTCCGCATCGACACGAAGCTGCTGAACGCCAG-CCTTGGGTGCATCCCGTT-CTACGAGCGACACGGA-TACGACGAAACACTATTCAGCACGCTGG-AGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCAAAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGAAGCTGAATGATTCCGTCGGTGGGACAGAAACAAAGCAATTGCATGTATCGAAAGAGCCAGTTAAGCCCGTGGAAGCCAAGTTGAGCGAGCTTAAAATTGAACCAGAAGTGAGTAAAACTGTCCCCAAAATCGTTCCCAAAGTTGAACCAACCGTTGCGACACCTCAACGAATCCGTCTCCACAAGGCTCGGGA]
[+] EMBL AL932724 [CCACCACCCATCCCTACGCAGAATGCCCGAGNNATCACTAACTTGAATCGACTCTTTCTTCCAAACTCCCGGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGCAACTGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACAAAGCCAGCNCAAGCAAAAGGGTGGGCCTAAAACCCCCGAAGTACAGCATACGGCACCGCTCGCTCGTCTGTGACGATCGGTACGGAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCG ATTNTTTGAGAAGCTTGNTCGCAGCTTCCCGCGATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACAGCTGGCTACAACCGGACACCGATCTACCTGGGCGAGGATGAAAAGAACCGCTTCAGTGAGTACTTCCGCATCGATACGAAGCTGCTGAACGCCAGCCCTTGGGTGCATCCCGTTACTACGAGCGACACGGATTACGACGAAACACTGTTCAGCACGCTGGNAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTC ]
[+] EMBL BM586587 [ ccgggcAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCG AT TTTGAGAAGC TGCTCG AGCTTCCGGC ATCGAGTGCGAGCCACTTTCTGCTTAGCTCGGAGAAAC GCTGGCTACAACCGGACACCGATCTACC GGGCGAAGATGAAAAGAACCGCTACAGTGAGTACTTCCGCATCGACACGAAGCTGCTGAACGCCAG CCTTGGGTGCATCCCGTT CTACGAGCGACACGGA TACGACGAAACACTATTCAGCACGCTGG AGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCAAAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGAAGCTGAATGATTCCGTCGGTGGGACAGAAACAAAGCAATTGCATGTATCGAAAGAGCCAGTTAAGCCCGTGGAAGCCAAGTTGAGCGAGCTTAAAATTGAACCAGAAGTGAGTAAAACTGTCCCCAAAATCGTTCCCA ]
[+] EMBL CNS09CQR [ AGACGAACAGCTCCTGGCGGCCGCAT TTTGAGAAGC TGCCCG AGCTTCCCGC ATCGAGTGCGAGCCACTTTCTGCTTAGCTCGGAGAAAC GCTGGCTACAACCGAACACCGATTTACC GGGCGAGGATGAAAAGAACCGCTACAGTGAGTTCTTCCGCATCGACACAAAGCTACTGAACGCCAG CATTGGGTGCATCCCGTT CTACGAGCGACACGGA TACGACGAAACACTATTCAGCACGCTGG AGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCACAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGGAGCTGGATGATTCCGTCGGTGGGACAGAAGCAAAGCAATTGCATGTATCGAAAGAGCAGGTTAAGCCTGTGGAAGCCAAGTTGAGCGAGCTTAAAATCGAACCAGAGGTGAGTTAAACTGTTCCCAAAATCGTTCCCAAAGTTGAACCAACCGTTGCGACACCTCAACGAATCCGTCTCCACAAGGCTCGGGA]
[-] EMBL CNS09CQS [ CCGTT CTACGAGCAACACGGA TACGACGAAACACTATTCAGCACGCTGG AGCTTAATCTAATGCGACAAAAGGCGGAAAAACATACGGACAAGTTCCAGCAAACCTTTGCCGACCTGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGAAAAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAAC ]
consensusID : consensus_7224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence
[GATCGCCCGAGGTTTGAATCGATTCTTTCCTTCCCAAACTCCCGGTGTACTGTTTGCG-TGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCG-TTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGACTGAAAAGAACCGCTTCAGTGAGTACTATCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGCAGCGACACGGATACGACGCAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGC]
[+] EMBL AL931789 [GATCGCCCGAGGTTTGAATCGATTCTTTCCTTCCCAAACTCCCGGTGTACTGTTTGCG TGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCG TTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGACTGAAAAGAACCGCTTCAGTGAGTACTATCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGCAGCGACACGGATACGACGCAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGC]
[+] EMBL BX619504 [ TTCTTTCCTTCCCAAACTCCCGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGA TGAAAAGAACCGCTTCAGTGAGTACT TCCGCATCGATACGAAGCTGCTGAACGCCAGCCTNGGGTGCATCCCGTCCTAC ]
consensusID : consensus_7224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[GATCGCCCCGAGGTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGATGAAAAGAACCGCTTCAGTGAGTACTTCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGAGCGACACGGATACGACGAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTT]
[+] EMBL AL930029 [GATCGCCCCGAGGTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGATGAAAAGAACCGCTTCAGTGAGTACTTCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGAGCGACACGGATACGACGAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7224#1 -----------------------------GATCGCCCGAGGTTTGAATCGATTCTTTCCT 31
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 CCACCACCCATCCCTACGCAGAATGCCCGAGNNATCACTAACTTGAATCGACTCTTTC-T 59
consensus_7224#1 TCCCAAACTCCCGGTGTACTGTTTGCGT-GTCTGGTAAAAAACAGCTTTTCTCTAACAGA 90
consensus_7224#2 ----GATCGCCCCGAG----GTTGCGTT-GTCTGGTAAAAAACAGCTTTTCTCTAACAGA 51
consensus_7224#0 TCCAAACTCCCGGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGC 119
* ** * * *** * ******************************
consensus_7224#1 A--TGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCAC 148
consensus_7224#2 A--TGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCAC 109
consensus_7224#0 AACTGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCAC 179
* *********************************************************
consensus_7224#1 CACCACCAAAGCCAGCC-AAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACG 207
consensus_7224#2 CACCACCAAAGCCAGCC-AAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACG 168
consensus_7224#0 CACCAC-AAAGCCAGCNCAAGCAAAAGGGTGGGCCTAAAACCCCCGAAGTACAGCATACG 238
****** ********* ************** ****** ********************
consensus_7224#1 GCACCGCTCG-TCGTT-GTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGAC 265
consensus_7224#2 GCACCGCTCG-TCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGAC 227
consensus_7224#0 GCACCGCTCGCTCGTCTGTGACGATCGGTACGG-AAGCGCCAGATTCAGCAAAACTGGAC 297
********** **** **************** **************************
consensus_7224#1 CGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGC 325
consensus_7224#2 CGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGC 287
consensus_7224#0 CGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGC 357
************************************************************
consensus_7224#1 CGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTC 385
consensus_7224#2 CGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTC 347
consensus_7224#0 CGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTC 417
************************************************************
consensus_7224#1 CGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGACTGAAAAGAACCGCT 445
consensus_7224#2 CGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGA-TGAAAAGAACCGCT 406
consensus_7224#0 GGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGA-TGAAAAGAACCGCT 476
******************************************** **************
consensus_7224#1 TCAGTGAGTACTATCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCG 505
consensus_7224#2 TCAGTGAGTACT-TCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCG 465
consensus_7224#0 ACAGTGAGTACT-TCCGCATCGACACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCG 535
*********** ********** ************************************
consensus_7224#1 TTCTACGCAGCGACACGGATACGACGCAAACACTGTTCAGCACGCTGGAGCTTAATCTAA 565
consensus_7224#2 TTCTACG-AGCGACACGGATACGACG-AAACACTGTTCAGCACGCTGGAGCTTAATCTAA 523
consensus_7224#0 TTCTACG-AGCGACACGGATACGACG-AAACACTATTCAGCACGCTGGAGCTTAATCTAA 593
******* ****************** ******* *************************
consensus_7224#1 TGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGC--- 622
consensus_7224#2 TGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTT------------- 570
consensus_7224#0 TGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTAT 653
***********************************************
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 CGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCAAAAAGAAAACATGCCTCCTCCGC 713
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 CAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGAAGCTGAATG 773
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 ATTCCGTCGGTGGGACAGAAACAAAGCAATTGCATGTATCGAAAGAGCCAGTTAAGCCCG 833
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 TGGAAGCCAAGTTGAGCGAGCTTAAAATTGAACCAGAAGTGAGTAAAACTGTCCCCAAAA 893
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 TCGTTCCCAAAGTTGAACCAACCGTTGCGACACCTCAACGAATCCGTCTCCACAAGGCTC 953
consensus_7224#1 ----
consensus_7224#2 ----
consensus_7224#0 GGGA 957
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||