|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7253#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1086 fasta sequence
[CCGAAACGGTCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGGCACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGAAGAAGGAACAGTGAAGGTGTTTGTGCAAGGATCCGTTTATTCCTCGTACAGAAAAAGAAAGCACGCAGAGGAACAGTGGGTGAAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCAACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTCCGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCTACTCCCACCGAAAAATCACTCAGCCGGGACACACAGCTGACTGACCATCGCCGGTGAACTTCAGCTAAAAATAAACCAGTGCTTTCCCCCCTTCCCCGCCATCGACTTGGTTGGCAACAGAGCAGTGCGTGTGTGCGATCGCAGCTTCAGTGCCGGTTTCGGGCGAGTGTGTCGCCGCCTGTTGTTCAACGGTTTCCTAACTTGCGTGTTTCGATGCATCCATCGTTCCGGCTAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTTTCCGCGCCTGTCCGTGTGTGCGTGTCTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTC]
[+] EMBL BM648712 [CCGAAACGGTCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGGCACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGAAGAAGGAACAGTGAAGGTGTTTGTGCAAGGATCCGTTTATTCCTCGTACAGAAAAAGAAAGCACGCAGAGGAACAGTGGGTGAAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCAACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTCCGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCT ]
[+] EMBL BM627986 [ ccgAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCAACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTCCGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCTACTCCCACCGAAAAATCACTCAGCCGGGACACACAGCTGACTGACCATCGCCGGTGAACTTCAGCTAAAAATAAACCAGTGCTTTCCCCCCTTCCCCGCCATCGACTTGGTTGGCAACAGAGCAGTGCGTGTGTGCGATCGCAGCTTCAGTGCCGGTTTCGGGCGAGTGTGTCGCCGCCTGTTGTTCAACGGTTTCCTAACTTGCGTGTTTCGATGCATCCATCGTTCCGGCTAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTTTCCGCGCCTGTCCGTGTGTGCGTGTCTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTC]
consensusID : consensus_7253#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[TCGGCTCTTGCCGATGCACGATCACTTTGGGAGGAAATTGAGCTGTGTTTCTGTTTCTTTTAACGTGTTATTTAATCCTTTTTGTTAAACTGTCTTCTTTTTTTTTACTGGAACTCTCTGTTTTGTGATCGCGAGTTTTATGTGATATGTTCTGCCCGAGGGCTCCCGCAATGCATCAAATGCATCCCTACACATTGTGATAATGGTATAAAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTGTCCGCGCCTGTGCGCGTGTGTGAGTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGTGTGTGCTGACTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGTTAACCTGTGCCACGACCTTCAAACCCGTTACCGTCCTTCCGCAAGCGTTACTTGGCCGCTTTCCCGCTCGTCTGAATGCCAGCGTTTGCCGAAATGTT]
[+] EMBL BM615840 [TCGGCTCTTGCCGATGCACGATCACTTTGGGAGGAAATTGAGCTGTGTTTCTGTTTCTTTTAACGTGTTATTTAATCCTTTTTGTTAAACTGTCTTCTTTTTTTTTACTGGAACTCTCTGTTTTGTGATCGCGAGTTTTATGTGATATGTTCTGCCCGAGGGCTCCCGCAATGCATCAAATGCATCCCTACACATTGTGATAATGGTATAAAGCCGCGTTCCTTCCACGGGACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTGTCCGCGCCTGTGCGCGTGTGTGAGTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGTGTGTGCTGACTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGTTAACCTGTGCCACGACCTTCAAACCCGTTACCGTCCTTCCGCAAGCGTTACTTGGCCGCTTTCCCGCTCGTCTGAATGCCAGCGTTTGCCGAAATGTT]
consensusID : consensus_7253#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 463 fasta sequence
[CCGCCCACGCGTCCGCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGG-CACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCTGCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGG]
[+] EMBL BM636915 [CCGCCCACGCGTCCGCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGG CACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCTGCAACGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAATTGCTCGCTAAGAAGGCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAACCGTCTGTGAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATGATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAGAAAAGGTCGGAAGTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGG]
[+] EMBL BM651214 [ AATGGACGTAGCTCGCTCTTCCCGCAACCATCACACGGTCACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCT ]
[+] EMBL BM639563 [ ccgGCTCGCTCTTCCCGCAACCATCACACGG CACCAAACACGACACAACAGCAACCCCGGAGAGCTGCTGCTGTTACTGCTACTGCTATATTACACACTCCCGGTCGTCTCAGCCTTTAAAGTTTGTGGCCTCTATCCCTGCAACG ]
consensusID : consensus_7253#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[CNGGNCATGCATGGCTCAGGCCAGAATCGGCACNGAAGGTTTCGGGGTGTNATCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCGATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGGTGTGTGCTGACGTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGATTCAGCCTGTGCCACGGACCGTTACAAATCCGTTACCGTCCTTCCGCGANGCGTN]
[+] EMBL BX469697 [CNGGNCATGCATGGCTCAGGCCAGAATCGGCACNGAAGGTTTCGGGGTGTNATCACGCCGCCTGCTAGATTGTTAGGCGTTGTGTTAGGCAAGTGTCTGTCTGCGATTGCTGAACGATTTCTGGCGTGAAGAAGTGCCCACTCCAAGTGAGTTTACCCGGTGTGTGCTGACGTTCTCAACGCGCAAAAGGCAAGGAAGCAGCAAACCGGCCCTTCTAGATTCAGCCTGTGCCACGGACCGTTACAAATCCGTTACCGTCCTTCCGCGANGCGTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7253#1 TCGGCTCTTGCCGATGCACGATCACTTTGGGAGGAAATTGAGCTGTGTTTCTGTTTCTTT 60
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 ------------------------------------------------------------
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 TAACGTGTTATTTAATCCTTTTTGTTAAACTGTCTTCTTTTTTTTTACTGGAACTCTCTG 120
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 ------------------------------------------------------------
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 TTTTGTGATCGCGAGTTTTATGTGATATGTTCTGCCCGAGGGCTCCCGCAATGCATCAAA 180
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 -----CCGAAACGGTCG--AAGCAAATGGACGTAGCTCGCTCTTCCCGCAAC-CATCACA 52
consensus_7253#2 --CCGCCCACGCGTCCGCGAAGCAAATGGACGTAGCTCGCTCTTCCCGCAAC-CATCACA 57
consensus_7253#1 TGCATCCCTACACATTGTGATAATGGTATAAAGCCGCGTTCCTTCCACGGGACAAGGCCC 240
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 CGGCACCAAACACGACACAACAGCAACCC----CGGAGAGCTGCTGCTGTTACTGCTACT 108
consensus_7253#2 CGGCACCAAACACGACACAACAGCAACCC----CGGAGAGCTGCTGCTGTTACTGCTACT 113
consensus_7253#1 GAAAGAGCAAGTGAGCCCGACAGTGTAAGTGTCCGCGCCTGTGCGCGTGTGTGAGTG-TT 299
consensus_7253#3 ----------------------------------------CNGGNCATGCATG---G-CT 16
consensus_7253#0 GCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCC---AA 165
consensus_7253#2 GCTATATTACACACTCCCGGTCGTCTCAGCCTTTAGAGTTTGTGGCCTCTATCCCTGCAA 173
* * *
consensus_7253#1 TGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTT-TCACGCCGCCTGCTAGATTGTTAG 358
consensus_7253#3 CAGGCCAGAATCGGCACNGAAGGTTTCGGGGTGTNATCACGCCGCCTGCTAGATTGTTAG 76
consensus_7253#0 CGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAAT-TGCTCGCTAAGAAG 224
consensus_7253#2 CGTGGTTACGGCGGAACAACATGAGCAACAGTGTCGTGGCACAAT-TGCTCGCTAAGAAG 232
* * * **** * * * **** * * **
consensus_7253#1 GCGTTGTGT--TAGGCAAGTGTCTGTCTGC-ATTGCTGAACGATTTCTGGCGTGAAGAAG 415
consensus_7253#3 GCGTTGTGT--TAGGCAAGTGTCTGTCTGCGATTGCTGAACGATTTCTGGCGTGAAGAAG 134
consensus_7253#0 GCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAAC 284
consensus_7253#2 GCGTCCTGAAGCAGCTACATCTGTGCCGTCCATTTCCTTCTAAAGTGTGTTTTGTGAAAC 292
**** ** ** * * * ** * * *** * * * ** ** **
consensus_7253#1 TGCCCACTCCAAGTGAGTTTACCCG-TGTGTGCTGAC-TTCTCAACGCGCAAAAGGCAAG 473
consensus_7253#3 TGCCCACTCCAAGTGAGTTTACCCGGTGTGTGCTGACGTTCTCAACGCGCAAAAGGCAAG 194
consensus_7253#0 CGTCTGT----GAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATG 340
consensus_7253#2 CGTCTGT----GAAGGATCTGCTCCGTACATCCTTCCTTTGCACACAAAAAAACGGGATG 348
* * * * * * * * * ** * ** ** *** ** * *
consensus_7253#1 GAA-----GCAGCAAACCGGCCCTTCTAG--TTAACCTGTGCCACGACC---TTCAAACC 523
consensus_7253#3 GAA-----GCAGCAAACCGGCCCTTCTAGATTCAGCCTGTGCCACGGACCGTTACAAATC 249
consensus_7253#0 ATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAG--AAAAGGT 398
consensus_7253#2 ATACGATGGTGGTAAAAGCGTGTGTAAGAAGTGAGCGTCCATTGTAAGAAG--AAAAGGT 406
* * * *** * * * * * * **
consensus_7253#1 CGTTACCGTCCTTCCGC-AAGCGTTACTTGGCCGCTTTCCCGCTCGTCTGAATGCCAGCG 582
consensus_7253#3 CGTTACCGTCCTTCCGCGANGCGTN----------------------------------- 274
consensus_7253#0 CGGAA--GTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGAA 456
consensus_7253#2 CGGAA--GTCACCGCAGGGTGTGTTCAAGGGCTCAACAGCTGACTGTGGGGGAAAGGGG- 463
** * *** * * **
consensus_7253#1 TTTGCCGAAATGTT---------------------------------------------- 596
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 GAAGGAACAGTGAAGGTGTTTGTGCAAGGATCCGTTTATTCCTCGTACAGAAAAAGAAAG 516
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 CACGCAGAGGAACAGTGGGTGAAACAAATCACGGCACGCCAATGAAAGTGAATCGCGGCA 576
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 ACTTGTTCCCGACCGATCCGTTCTAGCTCTCCTTTAAGTGCGTGACGTCGGCTGGTTGTC 636
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 CGTGTGTTTGTGTGTGTGACGTGGCTTGCCTAAATTCCGTTATTTCTACTCCCACCGAAA 696
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 AATCACTCAGCCGGGACACACAGCTGACTGACCATCGCCGGTGAACTTCAGCTAAAAATA 756
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 AACCAGTGCTTTCCCCCCTTCCCCGCCATCGACTTGGTTGGCAACAGAGCAGTGCGTGTG 816
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 TGCGATCGCAGCTTCAGTGCCGGTTTCGGGCGAGTGTGTCGCCGCCTGTTGTTCAACGGT 876
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 TTCCTAACTTGCGTGTTTCGATGCATCCATCGTTCCGGCTAGCCGCGTTCCTTCCACGGG 936
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 ACAAGGCCCGAAAGAGCAAGTGAGCCCGACAGTGTAAGTTTCCGCGCCTGTCCGTGTGTG 996
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------------------------------------
consensus_7253#3 ------------------------------------------------------------
consensus_7253#0 CGTGTCTGTTTGCGTATGAAAGTGTGTGCATAGTTTCGGGGTGTTTCACGCCGCCTGCTA 1056
consensus_7253#2 ------------------------------------------------------------
consensus_7253#1 ------------------------------
consensus_7253#3 ------------------------------
consensus_7253#0 GATTGTTAGGCGTTGTGTTAGGCAAGTGTC 1086
consensus_7253#2 ------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||