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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1424 fasta sequence
[CCGCACAGGTGAAAACTCGCTGGTCGATCGTCCCTAGCACACAGACACACCTTCTATCCGGTTGCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAGAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGTCCGCCTGCGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGTAGCCAAAAAAAAGCGATTCATTGCCCTCAGAGCCAAAGGTTTTGTGCCCGGTTGGT---GACAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTACTAGTTGAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG-GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGGAAGGAGTCGGCGCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGACGCCCCCGAGACGCTTTAACCCCGAAACCCGAACCATCGCGGCATCATGCAGAAGTTTATCGCTTCCCGGGGCCGACTGAGCAAGCTGGCGGCGAACGGTGGCGCCGGGGGCCACAACGGGCCGGCTTCAGCCGTGCCGCAAATGATGACAAGCATGGTCAGCACGAAAGCAGATCCGATCGTGCCCTCGGTCGATCTGAGCCGCTCACATCTGATGATCCTGCCGACGGCCATCTCCACACCGCCCACCATCGAGCG]
[+] EMBL BM634772 [CCGCACAGGTGAAAACTCGCTGGTCGATCGTCCCTAGCACACAGACACACCTTCTATCCGGTTGCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAGAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGTCCGCCTGCGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGTAGCCAAAAAAAAGCGATTCATTGCCCTCAGAGCCAAAGGTTTTGTGCCCGGTTGGT GACAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTACTAGTTGAATTATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGTGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAA ]
[+] EMBL BM591222 [ CCGAAGG TTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGGAAGGAGTCGGCGCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGT ]
[+] EMBL CNS08PWW [ CAATCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTACTAGTTGAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACGTGGTTGGACCTGAACGATGACAACCTG ]
[+] EMBL BM604052 [ ccgGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCACCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGTGAAGGAGACGGCGCACCAGCGCCGAGCGGAAGAGCAGCAGCGCCGCGCGTTCATCTTGCCTAGCCCGAAAACACTCACACGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGACGCCCCCGAGACGCTTTAACCCCGAAACCCGAA ]
[+] EMBL BM591051 [ ccGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACG GGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGGAAGGAGTCGGCGCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGACGCCCCCGAGACGCTTCAA CCCG AACCCGAACCATCGCGGCATCATGCAGAAGTTTATCGCTTCCCGGGGCCGACTGAGCAAGCTGGCGGCGAACGGTGGCGCCGGGGGCCACAACGGGCCGGCTTCAGCCGTGCCGCAAATGATGACAAGCATGGTCAGCACGAAAGCAGATCCGATCGTGCCCTCGGTCGATCTGAGCCGCTCACATCTGATGATCCTGCCGACGGCCATCTCCACACCGCCCACCATCGAGCG]
consensusID : consensus_7256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[GACCCACGCGTCCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAAAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGCCCGTCCGGGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGCAGTCAAAAAAAAAAGCGATTCATTGCCGTAAGGTTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCAC]
[+] EMBL BM653536 [GACCCACGCGTCCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGAAACGGAAAAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGCCCGTCCGGGTGTTACAAGTGCTGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAAGCTCGTCAAATTGACGTCACGCAGATAGGCAGTCAAAAAAAAAAGCGATTCATTGCCGTAAGGTTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGGGAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGCTCCATTTAGGGGGAAACGTTTGCAC]
consensusID : consensus_7256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[GACCCACGCGTCCGCTCCATTTAGGTGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCAAGACCCAACCTTAACTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGGACCGAGGAGCGGAACGGGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGAAAGGAGACGGCGCACCAGCGCCGGGCGGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACACGGGCCCGCT]
[+] EMBL BM630168 [GACCCACGCGTCCGCTCCATTTAGGTGGAAACGTTTGCACAGGTGCAGTGTAGTCAGACCGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGATTAAATCAATACCCTCTATCGCTATCTGCCGTTTCAAGTGGTCGTGGTGGTTCGGGGTGTATTATCGATTGATAACGCGTAAAGCCAAGACCCAACCTTAACTCCAGCAATCATCATGAGACAGATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGACGCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGGACCGAGGAGCGGAACGGGCTGGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTCGCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGGAAAGGAGACGGCGCACCAGCGCCGGGCGGAAGAGCAGCAGCGCCGGGCATTCATCTTGCCGAGCCCGAAAACACTCACACGGGCCCGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7256#0 CCGCACAGGTGAAAACTCGCTGGTCGATCGTCCCTAGCACACAGACACACCTTCTATCCG 60
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 GTTGCGATCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTA 120
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 GTTTAGAAACGGAAGAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAA 180
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 AAAAACAACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACG 240
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 TTTGCACATCCACGCGATCGGCGTTGTGTGTGGTTCGGTCCGCCTGCGTGTTACAAGTGC 300
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 TGCGTGTGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGG 360
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 TGCGTACCATTAGAGGTCAGGCTCCTCCTGTTCGACTTTTCGATCCGCTGGGATGAACAA 420
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 GCTCGTCAAATTGACGTCACGCAGATAGGTAGCCAAAAAAAAGCGATTCATTGCCCTCAG 480
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 AGCCAAAGGTTTTGTGCCCGGTTGGTGACAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAA 540
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 GGGAAGCATTTTGTACTAGTTGAATCATCCTAAAAAAAAGTTGTGTAGCCGAAACCAAGC 600
consensus_7256#2 ---------------------------------------------GACCCACGCGTCCGC 15
consensus_7256#1 ---------------------------------------------GACCCACGCGTCCGA 15
* ** *
consensus_7256#0 TC----------CATTTAGGG-----GGAAACGTTTGCACAGGT-GCAGTGTAGTCAGAC 644
consensus_7256#2 TC----------CATTTAGGT-----GGAAACGTTTGCACAGGT-GCAGTGTAGTCAGAC 59
consensus_7256#1 TCGTACCGAACATTTTTCGGTAGCTTGGTTGTGCTGATGCGGGCAGTGGTGTAGTTTAGA 75
** *** ** ** * * * ** * *******
consensus_7256#0 CGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGAT-----TAAATCAATAC 699
consensus_7256#2 CGACCGAAAAGGTGGTTTGCCCGTGCGTCGAGATAGAGGCAGAT-----TAAATCAATAC 114
consensus_7256#1 AACGGAAAAACGGAGTTCATCTACCTTGCGAAAGAGAAGCTGAGGGTCACAAAAAAAAAC 135
**** * *** * *** * *** ** ** *** ** **
consensus_7256#0 CCTCTATCGCTATCTGCCGT--TTCAAGTG-GTCGTGGTGGTTCGGGGTGTATTATCGAT 756
consensus_7256#2 CCTCTATCGCTATCTGCCGT--TTCAAGTG-GTCGTGGTGGTTCGGGGTGTATTATCGAT 171
consensus_7256#1 AACGAGTGACGATCACCTGTATTTGAAGTGAGCTCTCGATCAACGGAACATACGTTTGCA 195
* * *** * ** ** ***** * * * *** ** * *
consensus_7256#0 TGATAACGCGTAAAGCCGAGACCCAACCTTAGCTCCAGCAATCATCATGAG------ACA 810
consensus_7256#2 TGATAACGCGTAAAGCCAAGACCCAACCTTAACTCCAGCAATCATCATGAG------ACA 225
consensus_7256#1 CATCCACGCGATCGGCGTTGTGTGTGGTTCGGCCCGTCCGGGTGTTACAAGTGCTGCGTG 255
***** ** * * * * * * * **
consensus_7256#0 GATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGAC 870
consensus_7256#2 GATCGGAATGGAGATCGAAGACCCGCTGAAGCGGATACAGGAGGAAATCAACGAGGTGAC 285
consensus_7256#1 TGTCAAAGTGTGTATCATTAGTCGGTTGTGTTTGGCCCCATCGGAAGGGAACGGTGCGTA 315
** * ** *** * * ** * * **** **** * *
consensus_7256#0 GCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGCACCGAGGAGCGGAACGGGCT 930
consensus_7256#2 GCGCCGGGAGCAGGAGCTGCGCGAAGGTCACCGAACCGGGACCGAGGAGCGGAACGGGCT 345
consensus_7256#1 CCATTAGAGGTCAG-GCTCCTCCTGTTCGACTTTTC--GATCCGCTGGGATGAACAAGCT 372
* * * * *** * * ** * * *** * * **** ***
consensus_7256#0 GGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTC 990
consensus_7256#2 GGACCTGAACGATGACAACCTGTCGTCGGGCAACTCGGACGATTCGGGCCTATCGCTGTC 405
consensus_7256#1 CGTC----AAATTGACGTCACGCAGATAGGCAGTCAAAAAAAA--AAGCGATTCATTGCC 426
* * * **** * * * **** * * ** ** ** *
consensus_7256#0 GCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGG 1050
consensus_7256#2 GCCGACGCCGGTCCACTCGCCGTCCGTGTCCAACCTGAAGGACAAGCTGGAGCAGAACGG 465
consensus_7256#1 GTAAGGTTGTGCCCGGTTGGTGCCGCCAGTCGGTTTTGTTTTTAAAGTGTTTAGCAAAGG 486
* * ** * * * * * * ** ** ** **
consensus_7256#0 GAAGGAGTCGGC----GCACCAGCGCCGGGCAGAAGAGCAGCAGCGCCGGGCATTCATCT 1106
consensus_7256#2 AAAGGAGACGGC----GCACCAGCGCCGGGCGGAAGAGCAGCAGCGCCGGGCATTCATCT 521
consensus_7256#1 GAAGCATTTTGTTCTAGTTCAATCATCCTAAAAAAAAGTTGTGTAGCCGAA-ACCAAGCT 545
*** * * * * * * * ** ** * **** * * **
consensus_7256#0 TGCCGAGCCCGAAAACACTCACTCGGGCCCGCTCGACGCCACAGCTGTTCCACACTTCGA 1166
consensus_7256#2 TGCCGAGCCCGAAAACACTCACACGGGCCCGCT--------------------------- 554
consensus_7256#1 CCATTTAGGGGGAAACGTTTGCAC------------------------------------ 569
* **** * * *
consensus_7256#0 CGCCCCCGAGACGCTTTAACCCCGAAACCCGAACCATCGCGGCATCATGCAGAAGTTTAT 1226
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 CGCTTCCCGGGGCCGACTGAGCAAGCTGGCGGCGAACGGTGGCGCCGGGGGCCACAACGG 1286
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 GCCGGCTTCAGCCGTGCCGCAAATGATGACAAGCATGGTCAGCACGAAAGCAGATCCGAT 1346
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 CGTGCCCTCGGTCGATCTGAGCCGCTCACATCTGATGATCCTGCCGACGGCCATCTCCAC 1406
consensus_7256#2 ------------------------------------------------------------
consensus_7256#1 ------------------------------------------------------------
consensus_7256#0 ACCGCCCACCATCGAGCG 1424
consensus_7256#2 ------------------
consensus_7256#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||