cluster # 7278

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Anopheles gambiae
cluster # 7278 cluster # 7278 Sequences # 7 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7278#0 length = 657 sequences # 1
consensus_7278#1 length = 568 sequences # 1

consensus_7278#2 length = 497 sequences # 3
consensus_7278#3 length = 224 sequences # 1
consensus_7278#4 length = 124 sequences # 1

consensusID : consensus_7278#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CCGCCCACGCGTCCGACATCCCCGTGCAAACGCTTTTATTTCACTCCATTATCTACAAATTAACGAAAACCCCTGATTGCTAACGGTGGGCTCGTGTCTCCCACGTCCGTCCTGTGCTGTGCTTCACGTCGGTTTCGTCTTCATATACTCGGCTTTGATACTTTCCCGGTCGGCAACATCTGGCAGCAAGTGCGGTGTTTGCTCGTGTTGCAACACCACGTATGTAGCAGCGGGCCTGGGCGAACGATCACTGTGCCCCCTCCTCCCCCCGGTAAGGACGCAAAAGCTTGACGTGAGCGTGCAACGATGCCACTGTTTGGTAAATCGCAGAAAAGCCCACAGGAGCTGGTGAAGTCGCTGAAGGAGGCGGTCAATGCGCTGGAGCGCGGCGATAAGAAGGCGGAAAAGGCACAGGAAGATGTGAGCAAGAACCTGGTGTCGATCAAGAACATGCTGTGCGGTACGGCCGATGCCGAGCCGCAGACCGAGATCGTCATCTCGCAGCTGGCCCACGAGCTGTACAGCACCGATCTGCTGCTGCTGCTGATACAGAACCTAAACCGCATTGACTTCGAGGGCAAGAAGGACGTGGCACACATCTTCAACAATGTGATCAGACGCCAGATCGGCACCCGACTGCCGACGGTCGAGTACATC]

[+] EMBL BM582807             [CCGCCCACGCGTCCGACATCCCCGTGCAAACGCTTTTATTTCACTCCATTATCTACAAATTAACGAAAACCCCTGATTGCTAACGGTGGGCTCGTGTCTCCCACGTCCGTCCTGTGCTGTGCTTCACGTCGGTTTCGTCTTCATATACTCGGCTTTGATACTTTCCCGGTCGGCAACATCTGGCAGCAAGTGCGGTGTTTGCTCGTGTTGCAACACCACGTATGTAGCAGCGGGCCTGGGCGAACGATCACTGTGCCCCCTCCTCCCCCCGGTAAGGACGCAAAAGCTTGACGTGAGCGTGCAACGATGCCACTGTTTGGTAAATCGCAGAAAAGCCCACAGGAGCTGGTGAAGTCGCTGAAGGAGGCGGTCAATGCGCTGGAGCGCGGCGATAAGAAGGCGGAAAAGGCACAGGAAGATGTGAGCAAGAACCTGGTGTCGATCAAGAACATGCTGTGCGGTACGGCCGATGCCGAGCCGCAGACCGAGATCGTCATCTCGCAGCTGGCCCACGAGCTGTACAGCACCGATCTGCTGCTGCTGCTGATACAGAACCTAAACCGCATTGACTTCGAGGGCAAGAAGGACGTGGCACACATCTTCAACAATGTGATCAGACGCCAGATCGGCACCCGACTGCCGACGGTCGAGTACATC]




>consensus_7278#0
CCGCCCACGCGTCCGACATCCCCGTGCAAACGCTTTTATTTCACTCCATTATCTACAAAT
TAACGAAAACCCCTGATTGCTAACGGTGGGCTCGTGTCTCCCACGTCCGTCCTGTGCTGT
GCTTCACGTCGGTTTCGTCTTCATATACTCGGCTTTGATACTTTCCCGGTCGGCAACATC
TGGCAGCAAGTGCGGTGTTTGCTCGTGTTGCAACACCACGTATGTAGCAGCGGGCCTGGG
CGAACGATCACTGTGCCCCCTCCTCCCCCCGGTAAGGACGCAAAAGCTTGACGTGAGCGT
GCAACGATGCCACTGTTTGGTAAATCGCAGAAAAGCCCACAGGAGCTGGTGAAGTCGCTG
AAGGAGGCGGTCAATGCGCTGGAGCGCGGCGATAAGAAGGCGGAAAAGGCACAGGAAGAT
GTGAGCAAGAACCTGGTGTCGATCAAGAACATGCTGTGCGGTACGGCCGATGCCGAGCCG
CAGACCGAGATCGTCATCTCGCAGCTGGCCCACGAGCTGTACAGCACCGATCTGCTGCTG
CTGCTGATACAGAACCTAAACCGCATTGACTTCGAGGGCAAGAAGGACGTGGCACACATC
TTCAACAATGTGATCAGACGCCAGATCGGCACCCGACTGCCGACGGTCGAGTACATC

consensusID : consensus_7278#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CCGCCCACGCATCCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGATGGACGGCAAACCGACCGATCGGGTCGAGCGGAAGGTCTTTCCACCGGTGCGCAACGTGCAGGAAAAGCTGGACAAGGTGATCTCCTCCGTCGAGCAGCAGGAACAGCCGGAGGAACTGCTCTCGGAACGGTTCTTTATCGACGATGCGGCTACGAAGCAACAGAAGGGACCGAACGGTGGACGGTATGGTGGTGGCGGCAATCCGTTTGATGGTCAAACGGATGTAGAGAGCTTCGAAAGGGAAATGGAACAGATGCCGCTGAAGCAGGGCAAATCGGCGTACGCCAACTCGGCACCCTTTTTCGACTACGGCGAGCACACGAGCCAGCGGATGTTGGACGAGTTCTTTGCGCTGCGCAACCAGGACACGCTGGCGGCCCGCCGCTCAAACTATGACTGGGGCGAGGGACAGCTGCGGTCGCGCACGCTCGAGGACATCGAAGCCCAGGGCCGTCGGGTGGCGGCCGGGAGAAGGAAACCGTCCGGAGACTACCAGCGCGAGGAGGACATGAGCTACGATC]

[+] EMBL BM577771             [CCGCCCACGCATCCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGATGGACGGCAAACCGACCGATCGGGTCGAGCGGAAGGTCTTTCCACCGGTGCGCAACGTGCAGGAAAAGCTGGACAAGGTGATCTCCTCCGTCGAGCAGCAGGAACAGCCGGAGGAACTGCTCTCGGAACGGTTCTTTATCGACGATGCGGCTACGAAGCAACAGAAGGGACCGAACGGTGGACGGTATGGTGGTGGCGGCAATCCGTTTGATGGTCAAACGGATGTAGAGAGCTTCGAAAGGGAAATGGAACAGATGCCGCTGAAGCAGGGCAAATCGGCGTACGCCAACTCGGCACCCTTTTTCGACTACGGCGAGCACACGAGCCAGCGGATGTTGGACGAGTTCTTTGCGCTGCGCAACCAGGACACGCTGGCGGCCCGCCGCTCAAACTATGACTGGGGCGAGGGACAGCTGCGGTCGCGCACGCTCGAGGACATCGAAGCCCAGGGCCGTCGGGTGGCGGCCGGGAGAAGGAAACCGTCCGGAGACTACCAGCGCGAGGAGGACATGAGCTACGATC]




>consensus_7278#1
CCGCCCACGCATCCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGATGGACGGCAAACCG
ACCGATCGGGTCGAGCGGAAGGTCTTTCCACCGGTGCGCAACGTGCAGGAAAAGCTGGAC
AAGGTGATCTCCTCCGTCGAGCAGCAGGAACAGCCGGAGGAACTGCTCTCGGAACGGTTC
TTTATCGACGATGCGGCTACGAAGCAACAGAAGGGACCGAACGGTGGACGGTATGGTGGT
GGCGGCAATCCGTTTGATGGTCAAACGGATGTAGAGAGCTTCGAAAGGGAAATGGAACAG
ATGCCGCTGAAGCAGGGCAAATCGGCGTACGCCAACTCGGCACCCTTTTTCGACTACGGC
GAGCACACGAGCCAGCGGATGTTGGACGAGTTCTTTGCGCTGCGCAACCAGGACACGCTG
GCGGCCCGCCGCTCAAACTATGACTGGGGCGAGGGACAGCTGCGGTCGCGCACGCTCGAG
GACATCGAAGCCCAGGGCCGTCGGGTGGCGGCCGGGAGAAGGAAACCGTCCGGAGACTAC
CAGCGCGAGGAGGACATGAGCTACGATC

consensusID : consensus_7278#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 497
fasta sequence

                              [GAATTCCCCGGGGACTTTTGGCCCCCTGGGGGAAAAAAAAAAAAAAAAAAAAACCTGTTATCAAAGCAGTCTAAAAAAAAATCGAAATTGTTTCTTGCCGCCCACGCGTCCG-------CTGCGTTTTTGTTAAACATCTACGGAGGAAGGAAAATGCTGCCCGTTCGTTCTATTGCAAACTTATCCATCCGCAACGCGGCATTTCTGTCCCGTGGATACCATGGCCCCAACAACTTCCGTGTGTACACCATGAACGACATGCCTGTCCCGGAAGGGGACTTCTTCGAAGAACATCGACGCAAGAATCGGGTGTACAATACCGTGCTCGCTGCGGGTATTGTTATCTTTGGCATCACATTGACTGTGGCCAAGGAGAGCGGATTGATCTACCTTAATTACAGCCCGCCGAAAAGCCTGGACTAAGTGGGGATCAGGATGGCGACGTGTTGTAAACAACATATTAGATGTTTCGTGAAAATAAATCAGTCTAAATGAAAATAGTT]

[-] EMBL CNS08HUW             [GAATTCCCCGGGGACTTTTGGCCCCCTGGGGGAAAAAAAAAAAAAAAAAAAAACCTGTTATCAAAGCAGTCTAAAAAAAAATCGAAATTGTTTCTTGCTATGATCGGGTCTC       CTACGTTTTTGTTAAACATCTACGGAGGAAGGAAAATGCTGCCCGTTCGTTATATTGCAAAATTATCCATCCGCAACGCGGCATTTTTGTCCCGTGGATACCATGGCCCCAACAACTTCCGTGTGTACACCATGAACCACATG                                                                                                                                                                                                                                                  ]
[+] EMBL BM633632             [                                                                                                 CCGCCCACGCGTCCGGGATCTCCTGCGTTTTTGTTAAACATCTACGGAGGAAGGAAAATGCTGCCCGTTCGTTCTATTGCAAACTTATCCATCCGCAACGCGGCATTTCTGTCCCGTGGATACCATGGCCCCAACAACTTCCGTGTGTACACCATGAACGACATGCCTGTCCCGGAAGGGGACTTCTTCGAAGAACATCGACGCAAGAATCGGGTGTACAATACCGTGCTCGCTGCGGGTATTGTTATCTTTGGCATCACATTGACTGTGGCCAAGGAGAGCGGATTGATCTACCTTAATTACAGCCCGCCGAAAAGCCTGGACTAAGTGGGGATCAGGATGGCGACGTGTTGTAAACAACATATTAGATGTTTCGTGAAAATAAATCAGTCTAAATGAAAATAGTT]
[+] EMBL BM591599             [                                                                                                 CCGCCCACGCGTCCG       CTGCGTTTTTGTTAAACATCTACGGAGGAAGGAAAATGCTGCCCGTTCGTTCTATTGCAAACTTATCCATCCGCAACGCGGCATTTCTGTCCCGTGGATACCATGGCCCCAACAACTTCCGTGTGTACACCATGAACGACATGCCTGTCCCGGAAGGGGACTTCTTCGAAGAACATCGACGCAAGAATCGGGTGTACAATACCGTGCTCGCTGCGGGTATTGTTATCTTTGGCATCACATTGACTGTGGCCAAGGAGAGCGGATTGATCTACCTTAATTACAGCCCGCCGAAAAGCCTGGACTAAGTGGGGATCAGGATGGCGACGTGTTGTAAACAACATATTAGATGTTTCGTGAAAATAAATCAGTCTAAATGAAAATAGTT]




>consensus_7278#2
GAATTCCCCGGGGACTTTTGGCCCCCTGGGGGAAAAAAAAAAAAAAAAAAAAACCTGTTA
TCAAAGCAGTCTAAAAAAAAATCGAAATTGTTTCTTGCCGCCCACGCGTCCGCTGCGTTT
TTGTTAAACATCTACGGAGGAAGGAAAATGCTGCCCGTTCGTTCTATTGCAAACTTATCC
ATCCGCAACGCGGCATTTCTGTCCCGTGGATACCATGGCCCCAACAACTTCCGTGTGTAC
ACCATGAACGACATGCCTGTCCCGGAAGGGGACTTCTTCGAAGAACATCGACGCAAGAAT
CGGGTGTACAATACCGTGCTCGCTGCGGGTATTGTTATCTTTGGCATCACATTGACTGTG
GCCAAGGAGAGCGGATTGATCTACCTTAATTACAGCCCGCCGAAAAGCCTGGACTAAGTG
GGGATCAGGATGGCGACGTGTTGTAAACAACATATTAGATGTTTCGTGAAAATAAATCAG
TCTAAATGAAAATAGTT

consensusID : consensus_7278#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [CCGCCCACGCGTCCGTATCGATCTGCCGCACGTTCTTCACATCAGAATGAAGTTCGGCAAAGTGCTCGGTGTAGTGTGTGTACTGGCGTTGGCTCTGGCCAATGCAGCACCGGAGGAAGTGCAACAAAAAGAGTTGCGACCGGCTGAAGCTGTGGATGGGGCGGCGGCTCAGACCGATGACGTGGTGGCTGTCACGGCGGACGTGACCCACGACGCGGCCGTCG]

[+] EMBL BM608211             [CCGCCCACGCGTCCGTATCGATCTGCCGCACGTTCTTCACATCAGAATGAAGTTCGGCAAAGTGCTCGGTGTAGTGTGTGTACTGGCGTTGGCTCTGGCCAATGCAGCACCGGAGGAAGTGCAACAAAAAGAGTTGCGACCGGCTGAAGCTGTGGATGGGGCGGCGGCTCAGACCGATGACGTGGTGGCTGTCACGGCGGACGTGACCCACGACGCGGCCGTCG]




>consensus_7278#3
CCGCCCACGCGTCCGTATCGATCTGCCGCACGTTCTTCACATCAGAATGAAGTTCGGCAA
AGTGCTCGGTGTAGTGTGTGTACTGGCGTTGGCTCTGGCCAATGCAGCACCGGAGGAAGT
GCAACAAAAAGAGTTGCGACCGGCTGAAGCTGTGGATGGGGCGGCGGCTCAGACCGATGA
CGTGGTGGCTGTCACGGCGGACGTGACCCACGACGCGGCCGTCG

consensusID : consensus_7278#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 124
fasta sequence

                              [AGAAGGACAAGGATCGCAAGAAGATCCCGGAACGCCGCGCCAAGGGCCGTCAGGCGGCGCTCAACAAGGACAAGGGCAAGTACACCGAGGAAACCGCCGCCGCCACCGCGATGGAAACGACCAC]

[+] EMBL CNS08IH5             [AGAAGGACAAGGATCGCAAGAAGATCCCGGAACGCCGCGCCAAGGGCCGTCAGGCGGCGCTCAACAAGGACAAGGGCAAGTACACCGAGGAAACCGCCGCCGCCACCGCGATGGAAACGACCAC]




>consensus_7278#4
AGAAGGACAAGGATCGCAAGAAGATCCCGGAACGCCGCGCCAAGGGCCGTCAGGCGGCGC
TCAACAAGGACAAGGGCAAGTACACCGAGGAAACCGCCGCCGCCACCGCGATGGAAACGA
CCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7278#3      ------------------------------------------------------------
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      ------------------------------------------------------------
consensus_7278#0      CCGCCCACGCGTCCGACATCCCCGTGCAAACGCTTTTATTTCACTCCATTATCTACAAAT 60
consensus_7278#2      ------------------------------------------------------------
                                                                                  

consensus_7278#3      ------------------------------------------------------------
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      --------------------------------------------------------CCGC 4
consensus_7278#0      TAACGAAAACCCCTGATTGCTAACGGTGGGCTCGTGTCTCCCACGTCCGTCCTGTGCTGT 120
consensus_7278#2      ------------------------------------------------------------
                                                                                  

consensus_7278#3      --------------------CCGCCCACGCGTCCGTATCGATCTGCCGCACGTTC-TTCA 39
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      CCACGCATCCGCCCACGCGTCCGCCCACGCGTCCGGAGCAGATGGACGGCAAACC-GACC 63
consensus_7278#0      GCTTCACGTCGGTTTCGTCTTCATATACTCGGCTTTGATACTTTCCCGGTCGGCAACATC 180
consensus_7278#2      ---------------------------GAATTCCCCGGGGACTTTTGGCCCCCTGGGGGA 33
                                                                                  

consensus_7278#3      CATCAGAATGAAGTTCGGCA-AAGTGCTCGGTGTAGTGTGTGTACTGGCGTTGGCTCTGG 98
consensus_7278#4      -AGAAGGACAAGGATCGCAAGAAGATCCCGGAACGCCGCGCCAAGGGCCGTCAGGCGGCG 59
consensus_7278#1      GATCGGGTCGAGCGGAAGGTCTTTCCACCGGTGCGCAACGTGCAGGAAAAGCTGGACAAG 123
consensus_7278#0      TGGCAGCAAGTGCGGTGTTTGCTCGTGTTGCAACACCACGTATGTAGCAGCGGGCCTGGG 240
consensus_7278#2      AAAAAAAAAAAAAAAAAAAACCTGTTATCAAAGCAGTCTAAAAAAAAATCGAAATTGTTT 93
                                                                                  

consensus_7278#3      CCAATG----CAGCACCGG------------AGGAAGTGCAACAAAAAGAGTTGCGACCG 142
consensus_7278#4      CTCAAC----AAGGACAAG------------GGCAAGTACACCGAGGA-AACCGCCGCCG 102
consensus_7278#1      GTGATCTCCTCCGTCGAGC------------AGCAGGAACAGCCGGAGGAACTGCTCTCG 171
consensus_7278#0      CGAACGATCACTGTGCCCCCTCC-TCCCCCCGGTAAGGACGCAAAAGCTTGACGTGAGCG 299
consensus_7278#2      CTTGCCGCCCACGCGTCCGCTGCGTTTTTGTTAAACATCTACGGAGGAAGGAAAATGCTG 153
                                  *                     *                        *

consensus_7278#3      G------CTGAAGCTGTGGATGGGGCGGCGGCTCAGACCG-ATGACGTGGTGGCTGTCAC 195
consensus_7278#4      -------CCACCGCGATGGAAACGACCAC------------------------------- 124
consensus_7278#1      GAACGGTTCTTTATCGACGATGCGGCTACGAAGCAACAGA-AGGGACCGAACGGTGGACG 230
consensus_7278#0      TGCAACGATGCCACTGTTTGGTAAATCGCAGAAAAGCCCACAGGAGCTGGTGAAGTCGCT 359
consensus_7278#2      CCCGTTCGTTCTATTGCAAACTTATCCATC-CGCAACGCGGCATTTCTGTCCCGTGGATA 212
                                                                                  

consensus_7278#3      GGCGGACGTGACCCACGACGCGGCCGTCG------------------------------- 224
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      GTATGGTGGTGGCGGCAATCCGTTTGATGGTCAAACGGATGTAGAGAGCTTCGAAAGGGA 290
consensus_7278#0      GAAGGAGGCGGTCAATGCGCTGGAGCGCGGCGATAAGAAGGCGGAAAAGGCACAGGAAGA 419
consensus_7278#2      CCATGGCCCCAACAACTTCCGTGTGTACACCATGAACGACATGCCTGTCCCGGAAGGGGA 272
                                                                                  

consensus_7278#3      ------------------------------------------------------------
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      AATGGAACAGATGCCGCTGAAGCAGGGCAAATCGGCGTACGCCAACTCGGCACCCTTTTT 350
consensus_7278#0      TGTGAGCAAGAACCTGGTGTCGATCAAGAACATGCTGTGCGGTACGGCCGATGCCGAGCC 479
consensus_7278#2      CTTCTTCGAAGAACATCGACGCAAGAATCGGGTGTACAATACCGTGCTCGCTGCGGGTAT 332
                                                                                  

consensus_7278#3      ------------------------------------------------------------
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      CGACTACGGCGAGCACACGAGCCAGCGGATGTTGGACGAGTTCTTTGCGCTGCGCAACCA 410
consensus_7278#0      GCAGACCGAGATCGTCATCTCGCAGCTGGCCCACGAGCTGTACAGCACCGATCTGCTGCT 539
consensus_7278#2      TGTTATCTTTGGCATCACATTGACTGTGGCCAAGGAGAGCGGATTGATCTACCTTAATTA 392
                                                                                  

consensus_7278#3      ------------------------------------------------------------
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      GGACACGCTGGCGGCCCGCCGCTCAAACTATGACTGGGGCGAGGGACAGCTGCGGTCGCG 470
consensus_7278#0      GCTGCTGATACAGAACCTAAACCGCATTGACTTCGAGGGCAAGAAGGACGTGGCACACAT 599
consensus_7278#2      CAGCCCGCCGAAAAGCCTGGACTAAGTGGGGATCAGGATGGCGACGTGTTGTAAACAACA 452
                                                                                  

consensus_7278#3      ------------------------------------------------------------
consensus_7278#4      ------------------------------------------------------------
consensus_7278#1      CACGCTCGAGGACATCGAAGCCCAGGGCCGTCGGGTGGCGGCCGGGAGAAGGAAACCGTC 530
consensus_7278#0      CTTCAACAATGTGATCAGACGCCAGATCGGCACCCGACTGCCGACGGTCGAGTACATC-- 657
consensus_7278#2      TATTAGATGTTTCGTGAAAATAAATCAGTCTAAATGAAAATAGTT--------------- 497
                                                                                  

consensus_7278#3      --------------------------------------
consensus_7278#4      --------------------------------------
consensus_7278#1      CGGAGACTACCAGCGCGAGGAGGACATGAGCTACGATC 568
consensus_7278#0      --------------------------------------
consensus_7278#2      --------------------------------------