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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence
[CCGGGGAACGGGAAGCGCTACAGTTCATGCGCGGCATGATGGACGAATGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCTGCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGCCCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCAGAAGCTGTTCCGCTCGTGCATTATCGAGGCGTTTGAGCGGGCGAAGAAAAAGTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAGCCCATCCACCACGGTTGGAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTGAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAAGTTAGGGGTGTGCCGCGTTCACCCTCAGCTTCCGGGGGGAGAGCAGCAGCGAACCTTTTTTGGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTTATATGGTTCGTTTGCTCG]
[+] EMBL BM608857 [CCGGGGAACGGGAAGCGCTACAGTTCATGCGCGGCATGATGGACGAATGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCTGCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGCCCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCAGAAGCTGTTCCGCTCGTGCATTATCGAGGCGTTTGAGCGGGCGAAGAAAAAGTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAGCCCATCCACCACGGTTGGAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTGAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAAGTTAGGGGTGTGCCGCGTTCACCCTCAGCTTCCGGGGGGAGAG ]
[+] EMBL BM628274 [ ccgGCGCGGCATGATGGACGAATGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCTGCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGCCCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCAGAAGCTGTTCCGCTCGTGCATTATCGAGGCGTTTGAGCGGGCGAAGAAAAAGTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAGCCCATCCACCACGGTT GAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTGAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAAC AGTTAGGGGTGTGCCGCGTTCACCCTCAGC TCCGGGGGGAGAGCAGCAGCGAACCTTTTTTGGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTTATATGGTTCGTTTGCTCG]
consensusID : consensus_7304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence
[CCGGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGAAACACAGAGGAAATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGCGGAAACGGGGGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAGTCAGGGTGTGCCGCGTTCAACCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTTTAGCGGACGTTGTGGAACTCG-GGAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGTTTTCAAGGGGTGCAGGACGAAAACGTACAAAAGAAAGCGGGAAAATGAGCCGCAGAACGAAGAACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGAATGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTGTACAGTGAATGATTGATGATTCCTTTCACT]
[+] EMBL BM622873 [CCGGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGAAACACAGAGGAAATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGCGGAAACGGGGGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAGTCAGGGTGTGCCGCGTTCAACCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTTTAGCGGACGTTGTGGAACTCG GGAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGTTTTCAAGGGGTGCAGGACGAAAACGTACAAAAGAAAGCGGGAAAATGAGCCGCAGAACGAAGAACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGAATGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTGTACAGTGAATGATTGATGATTCCTTTCACT]
[+] EMBL BX610462 [ AATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGTGGAAA AACGGGGGGGAAACATCAACCGGTACGCCGGGAAACAAAACAGTTAGGGTGTGCCACGTTCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAAAGCGGGAAAATGAGCCGCAGAAC TGCACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTT ]
consensusID : consensus_7304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[AAGCGGGAAAATGAGCCGCAGAACTGCACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGAGCACGAGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGATTGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTCTACAGTGAATAATTGATGATTTCTCTCACTCTACTTATTTAAACTCATTCAAACGTTCTTCATGTGCTGGTATTTTCAACACACTGGTATTTTTAATTGGTAATATACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCGTTAGTGAACTGTTTTTTGCCACTGCAATCTTCTGTTGATTCAAATAGTGATAGTGTTTCCATGTTACCAACTAATGATTGCTTTGTAATAAACTTGC]
[+] EMBL BX612569 [AAGCGGGAAAATGAGCCGCAGAACTGCACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGAGCACGAGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGATTGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTCTACAGTGAATAATTGATGATTTCTCTCACTCTACTTATTTAAACTCATTCAAACGTTCTTCATGTGCTGGTATTTTCAACACACTGGTATTTTTAATTGGTAATATACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCGTTAGTGAACTGTTTTTTGCCACTGCAATCTTCTGTTGATTCAAATAGTGATAGTGTTTCCATGTTACCAACTAATGATTGCTTTGTAATAAACTTGC]
consensusID : consensus_7304#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[GCAATCATTGTGGAAAAACGGGGGGGAAACATCAACCGGTACGCCGGTAAACAAAACAGTTAGGGGGTGCCACGTTCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAAAGCGGGAAAAAGAGCCGCAGAACCGCACAGAA]
[+] EMBL BX612432 [GCAATCATTGTGGAAAAACGGGGGGGAAACATCAACCGGTACGCCGGTAAACAAAACAGTTAGGGGGTGCCACGTTCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAAAGCGGGAAAAAGAGCCGCAGAACCGCACAGAA]
consensusID : consensus_7304#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence
[CCGCTCATTCAAACGTTCTTCATGTACTGGTATTTTTAATTGGTAATGTACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCATTAGTGAACTGTTTCTTTGCCACTGCAATATTCTGCTGATTCAAATAGTGATAGTGTTTCTATGTTACCAACTAATTATTGCTTTGTAATAAACTTGCTACAAAATGTATAGC]
[+] EMBL BM601222 [CCGCTCATTCAAACGTTCTTCATGTACTGGTATTTTTAATTGGTAATGTACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCATTAGTGAACTGTTTCTTTGCCACTGCAATATTCTGCTGATTCAAATAGTGATAGTGTTTCTATGTTACCAACTAATTATTGCTTTGTAATAAACTTGCTACAAAATGTATAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7304#1 ------------------------------------------------------------
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 ------------------------------------------------------------
consensus_7304#2 AAGCGGGAAAATGAGCCGCAGAACTGCACAGAACGAAGAAATACCGTACAAATGCTGTTT 60
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 ------------------------------------------------------------
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 ------------------------------------------------------------
consensus_7304#2 TACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTG 120
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 -----------CCGGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGAAACACAGAG 49
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 -------------CCGGGGAACGGGAAGCGCTACAGTTCATGCGCGGCATGATGGACGAA 47
consensus_7304#2 TGATAATAATTGCGCAAGCGAATGGTAGCGAGAGAGCACGAGAGAGATAGAGAGAGCTGT 180
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 GAAATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGCGGAAACG 109
consensus_7304#3 ------------------------------------------GCAATCATTGTGGAAA-A 17
consensus_7304#0 TGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCT-- 105
consensus_7304#2 TATATTCTGATTATTGTTTTAGCTAGTTAAGGATTGCGAATGTGAATCGACAGTTTCGAA 240
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 GGGGGGGGGAGACATTAACCGGTACGC-CGGGAAACAAAACAGT-CAGGGTGTGCCGCGT 167
consensus_7304#3 ACGGGGGGGAAACATCAACCGGTACGC-CGGTAAACAAAACAGT-TAGGGGGTGCCACGT 75
consensus_7304#0 GCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGC 165
consensus_7304#2 AGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTCTACAGTG 300
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 TCAACCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTTTAGCGGACGTTGTGGAACTCG 227
consensus_7304#3 TCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCG 135
consensus_7304#0 CCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCA-- 223
consensus_7304#2 AATAATTGATGATTTCTCTCACTCTACTTATTTAAACTCATTCAAACGTTCTTCATGTGC 360
consensus_7304#4 ---------------------------------CCGCTCATTCAAACGTTCTTCATGT-- 25
* **** * *
consensus_7304#1 --------GGAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGC 279
consensus_7304#3 C-------AAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGC 188
consensus_7304#0 --------GAAGCTGTTCCGCTCGTGCATTAT-CGAGGCGTTTGAGCGGGCGAAGAAAAA 274
consensus_7304#2 TGGTATTTTCAACACACTGGTATTTTTAATTGGTAATATACCACTTTGAGGTGAGTTCCA 420
consensus_7304#4 ---------------ACTGGTATTTTTAATTGGTAATGTACCACTTTGAGGTGAGTTCCA 70
* * * * * *
consensus_7304#1 TTCAGTC--GATCCGGCATCACGGTTTTCAAGGGGTGCAGGACGAAAACGTACAAAAGAA 337
consensus_7304#3 TTCAGTC--GATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAA 246
consensus_7304#0 GTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAG 334
consensus_7304#2 ATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAA-GTTTCGTTAGTGAACTG 479
consensus_7304#4 ATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAA-GTTTCATTAGTGAACTG 129
* ** * ** * **
consensus_7304#1 AGCGGGAAAATGAGCCGCAGAACGAAGAACAGAACGAA-----GAAATACCGTACAAATG 392
consensus_7304#3 AGCGGGAAAAAGAGCCGCAGAACC--GCACAGAA-------------------------- 278
consensus_7304#0 CCCATCCACCACGGTTGGAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCG 394
consensus_7304#2 TTT-TTTGCCACTGCAATCTTCTGTTGATTCAAATAGT----GATAGTGTTTCCATGTTA 534
consensus_7304#4 TTTCTTTGCCACTGCAATATTCTGCTGATTCAAATAGT----GATAGTGTTTCTATGTTA 185
* * *
consensus_7304#1 CTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGG--TTTTGAACGTTTG 450
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 CTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTG 454
consensus_7304#2 CCAACTAATGATTGCTTTGTAATAAACTTGC----------------------------- 565
consensus_7304#4 CCAACTAATTATTGCTTTGTAATAAACTTGCTACAAAATGTATAGC-------------- 231
consensus_7304#1 CAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGATAGAGAGAGCTGTTATA 510
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 AGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCG 514
consensus_7304#2 ------------------------------------------------------------
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 TTCTGATTATTGTTTTAGCTAGTTAAGGAATGCGAATGTGAATCGACAGTTTCGAAAGTG 570
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 GTACGCCGGGAAACAAAACAAGTTAGGGGTGTGCCGCGTTCACCCTCAGCTTCCGGGGGG 574
consensus_7304#2 ------------------------------------------------------------
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 AGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTGTACAGTGAATG 630
consensus_7304#3 ------------------------------------------------------------
consensus_7304#0 AGAGCAGCAGCGAACCTTTTTTGGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCT 634
consensus_7304#2 ------------------------------------------------------------
consensus_7304#4 ------------------------------------------------------------
consensus_7304#1 ATTGATGATTCCTTTCACT----- 649
consensus_7304#3 ------------------------
consensus_7304#0 GTATTTATATGGTTCGTTTGCTCG 658
consensus_7304#2 ------------------------
consensus_7304#4 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||