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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 929 fasta sequence
[GCAGATCGCCCGCAGGTTAAAAGCGATTAAAAGCGGTACAAATACACAAATTANACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGCAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGANCTCCCAAGCTCCTGAACCGACACTAAGGCATACGAAGGAGGCAGGATGACGACGGTTCACTGCGTAGCACAGAAAAGGACCAATTCACCCCGGGACCAAANACAATTTCCNCCGGATACCGGACAAAGGCACGGCACGACACCCAGCCGACAAAAGCACCACAAACGGTTCCGGCAAACACCGGGCAAAAAGGGGTTCACCAAGAAATTCCNAGCACAAATNCCNCCANACTTNCGAACTTGACGACNNGAAACGCTATTCCGCAACACGCAAACAGNTCCGGCAAGGCAACCACACCAGGCAGGCAANGTGGGCCGCGAAANCAACGAAAGGGGGCAACAAAAGAGGCCCCACACTACAAACTCCCGAGCAGATGGCCCATCNGNCAGAAGCTGGCACCCACAAAACAANAGCAGACAACCAAACGCGGACAACACCAAGCGAGCACCATGGGCAATCAAAAGGACAACGTTGCACGCTGNGCGCCAGAAACGGCGACGCCCAAGGGAAAAAANGGGGNCAACCAGGGGCTACATANGGAGACCCCCNGGACCAACACCCCAGGNCAACGAGCCAGACCGGACCANAGCACAGATCCACGGGAAGAGANGCGCGTACCCNCACNCGCCCTAAAGAANGCCCACGACCCGTTGTCCAGCANCCAA]
[+] EMBL AL693276 [GCAGATCGCCCGCAGGTTAAAAGCGATTAAAAGCGGTACAAATACACAAATTANACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGCAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGANCTCCCAAGCTCCTGAACCGACACTAAGGCATACGAAGGAGGCAGGATGACGACGGTTCACTGCGTAGCACAGAAAAGGACCAATTCACCCCGGGACCAAANACAATTTCCNCCGGATACCGGACAAAGGCACGGCACGACACCCAGCCGACAAAAGCACCACAAACGGTTCCGGCAAACACCGGGCAAAAAGGGGTTCACCAAGAAATTCCNAGCACAAATNCCNCCANACTTNCGAACTTGACGACNNGAAACGCTATTCCGCAACACGCAAACAGNTCCGGCAAGGCAACCACACCAGGCAGGCAANGTGGGCCGCGAAANCAACGAAAGGGGGCAACAAAAGAGGCCCCACACTACAAACTCCCGAGCAGATGGCCCATCNGNCAGAAGCTGGCACCCACAAAACAANAGCAGACAACCAAACGCGGACAACACCAAGCGAGCACCATGGGCAATCAAAAGGACAACGTTGCACGCTGNGCGCCAGAAACGGCGACGCCCAAGGGAAAAAANGGGGNCAACCAGGGGCTACATANGGAGACCCCCNGGACCAACACCCCAGGNCAACGAGCCAGACCGGACCANAGCACAGATCCACGGGAAGAGANGCGCGTACCCNCACNCGCCCTAAAGAANGCCCACGACCCGTTGTCCAGCANCCAA]
consensusID : consensus_7317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence
[GCAGAATCCGCACGANGTTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGTCACAAACAGCCGACCAACCGGCGCAAAGGCAGCCAAACCGGGAGCCGGATCATCCGGCAACACCGGACAACAGTGACGAGGAGGAAAGANGGACGAAACAAAATTGGGTTGGGAATTTCCTTTTCTTCGGTTTCAAAGCANAAGGTCGAATGAACATGGGCCCAACCCGGTCAGGCCACNNGAACGAAATTCAGGTGCGCGATTGGTGGGCGAAAAAAAGGGCCAGGGAAAATTGGGCG]
[+] EMBL BX467868 [GCAGAATCCGCACGANGTTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGTCACAAACAGCCGACCAACCGGCGCAAAGGCAGCCAAACCGGGAGCCGGATCATCCGGCAACACCGGACAACAGTGACGAGGAGGAAAGANGGACGAAACAAAATTGGGTTGGGAATTTCCTTTTCTTCGGTTTCAAAGCANAAGGTCGAATGAACATGGGCCCAACCCGGTCAGGCCACNNGAACGAAATTCAGGTGCGCGATTGGTGGGCGAAAAAAAGGGCCAGGGAAAATTGGGCG]
[+] EMBL BM626654 [ ccggcaaTTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGC ]
consensusID : consensus_7317#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 702 fasta sequence
[GACGTATTAACTCGCTCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCCATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGCCCAACAGCCGACCAACCGGCGCAAAACAGCCAAACCCGG]
[+] EMBL AL930460 [GACGTATTAACTCTCTCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCNCACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCAC ]
[+] EMBL BM576274 [ cCGCTCGGAAAAGCGATTAAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCCATCCCGGCCAACATTCCCGTACCGAAGCCACCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTCAAACCCAGCCCAACAGCCGACCAACCGGCGCAAAACAGCCAAACCCGG]
[+] EMBL BM575844 [ ccgCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCCGAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTTCCGTCCAGCAGCACACAAAGCACCACACTGGAAGATCAGGAACTGGACGTCGATGAACTACCGAAACATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCAATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCC ]
[+] EMBL BM616300 [ ccgAGCAATTGAAAAGCGGTAAAAATACACAAAATTACACACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCGGAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTTCCATCCAGCAGCACACAAAGCGCCACACTGGAAGATCAGGAGCCGGATGTCGATGAACTGCCGAAGCATAGCTTACACCTTCCAGCTCCCAAGCTCCTGAACGACCTAAGCATCGAGGAGGAGGATGACGAGTTCCTGCACAAGAAGGCCATCCCGGCCAACATTCCCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCAACGGCAAGGTACAGATCACCATCCCCTCGATGAAGGACTTCGACGACGTCGAGACACGCGATGCGAAAAAGGAAAAGCCCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGCCCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTAGTGCCACCTTCAGCAAGCGTCTCGTACCGGATTCCGTTGCCAATCGGCCCCGCAATGTCCCACTGAGTGCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7317#1 ---GCAG--AATCCGCACGANG------TTGAAAAGCGGTAAAAATACACAAAATTACAC 49
consensus_7317#2 GACGTATT-AACTCGCTCGGAAAAGCAATTGAAAAGCGGTAAAAATACACAAAATTACAC 59
consensus_7317#0 ---GCAGATCGCCCGCAGGTTAAAAGCGATTAAAAGCGGTACAAATACACAAA-TTANAC 56
* * *** * * ********** *********** *** **
consensus_7317#1 ACCATGTCCCTTGTGGCCTACGAATACAGTAGCGATGATGGCTCAGATCAAGAGGAACCC 109
consensus_7317#2 ACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGTTCGGATCAAGAGGAACCG 119
consensus_7317#0 ACCATGTCCCTTGTGGCCTACGAATACAGCAGTGATGATGGCTCAGATCAAGAGGAACCG 116
***************************** ** ******** ** **************
consensus_7317#1 GAAGAAACTAAACAACCAGTAGCCAGTGCTTCCGCCAAACAGAACGGCACTCCGAACGTT 169
consensus_7317#2 GAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTT 179
consensus_7317#0 GAAGAAACTAAACAACCAGTGGCCAGTGCACCCGTCAAACAGAATGGCACTCCGAACGTT 176
******************** ******** *** ********* ***************
consensus_7317#1 CCGTCCAGCAGCACACAAAGCACCACACTGG-AAGATCAGGAACTGGACGTCGATGAACT 228
consensus_7317#2 CCATCCAGCAGCACACAAAGCGCCACACTGG-AAGATCAGGAGCCGGATGTCGATGAACT 238
consensus_7317#0 CCATCCAGCAGCACACAAAGCGCCACACTGGCAAGATCAGGAGCCGGATGTCGATGAACT 236
** ****************** ********* ********** * *** ***********
consensus_7317#1 ACCGAAACATAGCTTACACCTTCCAG--CTCCCAAGCTCCTGAAC-GAC-CTAAG---CA 281
consensus_7317#2 GCCGAAGCATAGCTTACACCTTCCAG--CTCCCAAGCTCCTGAAC-GAC-CTAAG---CA 291
consensus_7317#0 GCCGAAGCATAGCTTACACCTTCCAGANCTCCCAAGCTCCTGAACCGACACTAAGGCATA 296
***** ******************* ***************** *** ***** *
consensus_7317#1 TCGAGGAGG-AGGATGACGA--GTTC-CTGCACAAGAAGGCAATCCCGGCCAA--CATTC 335
consensus_7317#2 TCGAGGAGG-AGGATGACGA--GTTC-CTGCACAAGAAGGCCATCCCGGCCAA--CATTC 345
consensus_7317#0 CGAAGGAGGCAGGATGACGACGGTTCACTGCGTAGCACAGAAAAG--GACCAATTCACCC 354
****** ********** **** **** * * * * * **** ** *
consensus_7317#1 CCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCA-ACGGCAAGGTACAGA-TCAC 393
consensus_7317#2 CCGTACCGAAGCCGCCGCCCGCCAAGCCCAAGGTTCGCA-ACGGCAAGGTACAGA-TCAC 403
consensus_7317#0 CGGGACCAAANACAATTTCCNCCGGATACCGGACAAAGGCACGGCACGACACCCAGCCGA 414
* * *** ** * ** ** * * ****** * ** * *
consensus_7317#1 CATCCCCTCGATGAAGGACTTCGACGA-CGTCGAGACACGCGATGCGAAAAAGGAAAAGC 452
consensus_7317#2 CATCCCCTCGATGAAGGACTTCGACGA-CGTCGAGACACGCGATGCGAAAAAGGAAAAGC 462
consensus_7317#0 CAAAAGCACCACAAACGGTTCCGGCAAACACCGGGCAAAAAGGGGTTCACCAAGAAATTC 474
** * * * ** * * ** * * * ** * * * * * * **** *
consensus_7317#1 CCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGC 512
consensus_7317#2 CCATCATCGGTGCTGCAATGCCCAAAAAAACGACCAGCCTGCTAAGCATGCTGCCGAAGC 522
consensus_7317#0 CNAGCACAAATNCCNCCANACTTNCGAACTTGACGA-CNNGAAACGCTATTCCGCAACAC 533
* * ** * * * * * ** *** * * * * ** * * *
consensus_7317#1 CCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTA 572
consensus_7317#2 CCAGAACGGCACTGTTTGACCCGAAACCGTCGCCCGCAGCATCCGGAAGCGCTCCAGCTA 582
consensus_7317#0 GCAAACAGNTCCGGCAAGGCAACCACACCAGGCAGGCAANGTGGGCCGCGAAANCAACGA 593
** * * * * * * * * ** *** * * ** * *
consensus_7317#1 GTGCCACCTTCAGCAAGCGTCTCGTAC--CGGATTCCGTTGCCAATCGGCCCCGCAATGT 630
consensus_7317#2 GTGCCACCTTCAGCAAGCGTCTCGTAC--CGGATTCCGTTGCCAATCGGCCCCGCAATGT 640
consensus_7317#0 AAGGGGGCAACAAAAGAGGCCCCACACTACAAACTCCCGAGCAGAT-GGCCCATCNGNCA 652
* * ** * * * * ** * * *** ** ** ***** *
consensus_7317#1 CCCACTGAGTGCTCAAACCCAGTCACAAACAGCCGACCA--ACCGGCGCAAAGGCAGCCA 688
consensus_7317#2 CCCACTGAGTGCTCAAACCCAGCCC--AACAGCCGACCA--ACCGGCGCAAAA-CAGCCA 695
consensus_7317#0 GAAGCTGGCACCCACAAAACAANAGCAGACAACCAAACGCGGACAACACCAAGCGAGCAC 712
*** * ** ** *** ** * * * * * ** ***
consensus_7317#1 AACCGGGAGCCGGAT---CATCCGGCAACACCGGACAACAGTGACGAGGAGGAAAGANGG 745
consensus_7317#2 AACCCGG----------------------------------------------------- 702
consensus_7317#0 CATGGGCAATCAAAAGGACAACGTTGCACGCTGNGCGCCAGAAACGGCGACGCCCAAGGG 772
* *
consensus_7317#1 ACGAAACAAAATTGGGTTGGGAATTTCCTTT----TCTTCGGTTTCAAAGCANAAGGTCG 801
consensus_7317#2 ------------------------------------------------------------
consensus_7317#0 AAAAAANGGGGNCAACCAGGGGCTACATANGGAGACCCCCNGGACCAACACCCCAGGNC- 831
consensus_7317#1 AATGAACATGGGCCCAACCCGGTCAGGCCACNNGAACGAAATTCAGGTGCGCGATTGGTG 861
consensus_7317#2 ------------------------------------------------------------
consensus_7317#0 AACGAGC-CAGACCGGACCANAGCACAGATCCACGGGAAGAGANGCGCGTACCCNCACNC 890
consensus_7317#1 GGCGAAAAAAAGGGCCAGGGAAAATTGGGCG-------- 892
consensus_7317#2 ---------------------------------------
consensus_7317#0 GCCCTAAAGAANGCCCACGACCCGTTGTCCAGCANCCAA 929
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||