cluster # 7340

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Anopheles gambiae
cluster # 7340 cluster # 7340 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7340#0 length = 942 sequences # 5

consensus_7340#1 length = 818 sequences # 2

consensusID : consensus_7340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 942
fasta sequence

                              [ACGCCGGGTGTGAAAAGGCAGTCGTCGTCATGCTGTTCACCTTCGCCATGGGTCTTATGGGTACGTTCTACCCCGGCATGAAGGTCAATCCGCTCGATTTGAGTCCAAACTACGCTGGCACGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGCACGTTGTCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCTTTTGAAAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGTACGGATTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTTTAACAAAACCTCCCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTTATTTATACCACTTATCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGCAACTGAAACGGGTACACTAGAACAGCGATGGATTACGATCGTACATACCATTGTACCAGTTGTACCTGTTACGTAGATAGCAAT-AGGTGCCAGGGCAAAGCGATCGA]

[+] EMBL BX611283             [ACGCCGGGTGTGAAAAGGCAGTCGTCGTCATGCTGTTCACCTTCGCCATGGGTCTTATGGGTACGTTCTACCCCGGCATGAAGGTCAATCCGCTCGATTTGAGTCCAAACTACGCTGGCACGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGCACGTTGTCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCTTTTGAAAAGGAAGCAATCGAAAGTT                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX608749             [                                                                                                                                                                                           AATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCTTTTGAAAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGTACGGATTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTTTAACAAAACCTCCCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTTATTTATACCACTTATCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGCAACTGAAACGGGTACACTAGAACAGCGATGGATTACGATCGTACATACCATTGTACCAGTTGTACCTGTTACGTAGATAGCAAT AG                     ]
[+] EMBL BX607973             [                                                                                                                                                                                                                                       GGATCTCGTTTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCTTTTGAAAAGGAAGCAATCGAAAGTTTAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGTACGGATTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTTTAACAAAACCTCCCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTTATTTATACCACTTACCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGCAACT                                                                                                        ]
[+] EMBL BM623793             [                                                                                                                                                                                                                                                                                 ccgcccacGCGTCCGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCTTTTGAAAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGTACGGATTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTTTAACAAAACCTCCCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTTATTTATACCACTTATCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGCAACTGAAACGGGTACACTAGAACAGCGATGGATTACGATCGTACATACCATTGTACCAGTTGTACCTGTTACGTAGATAGCAAT AGGTGCCAGGGCAAAGCGATCGA]
[+] EMBL BX622756             [                                                                                                                                                                                                                                                                                                                                         TCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCTTTTGAAAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGTACGGATTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTTTAACAAAACCT CCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTTATTTATACCACTTATCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGCAACTGAAACGGGTACACTAGAACAGCGATGGATTACGATCGTACATACCATTGTACCAGNTGTACCTGTTACGTAGATAGCAATAAGGTGCCAGGG AAAGCGATCGA]




>consensus_7340#0
ACGCCGGGTGTGAAAAGGCAGTCGTCGTCATGCTGTTCACCTTCGCCATGGGTCTTATGG
GTACGTTCTACCCCGGCATGAAGGTCAATCCGCTCGATTTGAGTCCAAACTACGCTGGCA
CGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGCACGTTG
TCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGT
TTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGC
CCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTC
CGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCT
AGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACC
TGGAGTCTGCGTGAGTGATAGTAGAGAAGTAGAGGAAATTACTTTCAAATAGTAAAAGCT
TTTGAAAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGG
CTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGTACGGA
TTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTTTAACA
AAACCTCCCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTTATTTA
TACCACTTATCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGCAACTG
AAACGGGTACACTAGAACAGCGATGGATTACGATCGTACATACCATTGTACCAGTTGTAC
CTGTTACGTAGATAGCAATAGGTGCCAGGGCAAAGCGATCGA

consensusID : consensus_7340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 818
fasta sequence

                              [AGAATCGCCCGAGGCTCATTTGAGTCCAAACTACGCTGGCACGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGTACGTTGTCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTACCATTCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGNTAGAGAAGCTAGAGGAAATTACTTTCAAATAGTNAAAGCTTTCTGACCAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTCAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATTTACGGATTGATAGTTAATCCGACCATAGGCCACGCCACTGCTCTGCTGAAACGTGTAGGTTTGTTTTCGTGGAGAAATCCCAGCCACAAATCCTTTTTACAAAAGATTACGATTTAAGTAACGCCAAATGTGTTTGCTGCAATGATTAAACCGGTAGAGGGAGGGGGAGATAGAGGATTTTTGGATAATATTTGCATGGATATTTTGTCATCCGAAACGGGGAGTTCTATTTTCGGGGG]

[+] EMBL AL934685             [AGAATCGCCCGAGGCTCATTTGAGTCCAAACTACGCTGGCACGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGTACGTTGTCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTACCATTCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAGNTAGAGAAGCTAGAGGAAATTACTTTCAAATAGTNAAAGCTTTCTGACCAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTC                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX625334             [                                                                                                                                    AGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGATAG TAGAGAAG TAGAGGAAATTACTTTCAAATAGTAAAAGCTTT TGA AAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATTTACGGATTGATAGTTAATCCGACCATAGGCCACGCCACTGCTCTGCTGAAACGTGTAGGTTTGTTTTCGTGGAGAAATCCCAGCCACAAATCCTTTTTACAAAAGATTACGATTTAAGTAACGCCAAATGTGTTTGCTGCAATGATTAAACCGGTAGAGGGAGGGGGAGATAGAGGATTTTTGGATAATATTTGCATGGATATTTTGTCATCCGAAACGGGGAGTTCTATTTTCGGGGG]




>consensus_7340#1
AGAATCGCCCGAGGCTCATTTGAGTCCAAACTACGCTGGCACGCTGATGGCCATCACGAA
CGGTATCGGCGCCATTACCGGCATCATCGCACCGTACGTTGTCGGCGTAATGACACCCAA
TCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCGTTTGCCATCTTCAACGTTAC
CATTCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAGCCCTGGAACACGCCCCATCT
GATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTTCCGGCAAATGCAAAGAAAAG
CGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGCTAGCCCTGAGGCTCTCAGTG
ATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAACCTGGAGTCTGCGTGAGTGAT
AGNTAGAGAAGCTAGAGGAAATTACTTTCAAATAGTNAAAGCTTTCTGACCAAGGAAGCA
ATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAATATGGCTTATTTCAAAAATT
CCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATTTACGGATTGATAGTTAATCCG
ACCATAGGCCACGCCACTGCTCTGCTGAAACGTGTAGGTTTGTTTTCGTGGAGAAATCCC
AGCCACAAATCCTTTTTACAAAAGATTACGATTTAAGTAACGCCAAATGTGTTTGCTGCA
ATGATTAAACCGGTAGAGGGAGGGGGAGATAGAGGATTTTTGGATAATATTTGCATGGAT
ATTTTGTCATCCGAAACGGGGAGTTCTATTTTCGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7340#0      ACGCCGGGTGTGAAAAGGCAGTCGTCGTCATGCTGTTCACCTTCGCCATGGGTCTTATGG 60
consensus_7340#1      ------------------------------------------------------------
                                                                                  

consensus_7340#0      GTACGTTCTACCCCGGCATGAAGGTCAATCC-GCTCGATTTGAGTCCAAACTACGCTGGC 119
consensus_7340#1      --------------------AGAATCGCCCGAGGCTCATTTGAGTCCAAACTACGCTGGC 40
                                          *   **   *  *    ***********************

consensus_7340#0      ACGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGCACGTT 179
consensus_7340#1      ACGCTGATGGCCATCACGAACGGTATCGGCGCCATTACCGGCATCATCGCACCGTACGTT 100
                      ****************************************************** *****

consensus_7340#0      GTCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCG 239
consensus_7340#1      GTCGGCGTAATGACACCCAATCACACACTGGAAGAATGGCGCATTGTGTTCTGGATCTCG 160
                      ************************************************************

consensus_7340#0      TTTGCCATCTTCAACGTTACCAATCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAG 299
consensus_7340#1      TTTGCCATCTTCAACGTTACCATTCTGGCATACATCATCTGGGCGTCGGGTGAAGTGCAG 220
                      ********************** *************************************

consensus_7340#0      CCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTT 359
consensus_7340#1      CCCTGGAACACGCCCCATCTGATGAACAAATCGGTCGAGGCGGGTGAATCGATTGACGTT 280
                      ************************************************************

consensus_7340#0      CCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGC 419
consensus_7340#1      CCGGCAAATGCAAAGAAAAGCGTACAATCTCTAGAGGCCATAAAGCAGTAGAAGAGGAGC 340
                      ************************************************************

consensus_7340#0      TAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAAC 479
consensus_7340#1      TAGCCCTGAGGCTCTCAGTGATAGGCTAATGATCCCTTGCAGTTCACAGGACCTATCAAC 400
                      ************************************************************

consensus_7340#0      CTGGAGTCTGCGTGAGTGATAGT-AGAGAAG-TAGAGGAAATTACTTTCAAATAGTAAAA 537
consensus_7340#1      CTGGAGTCTGCGTGAGTGATAGNTAGAGAAGCTAGAGGAAATTACTTTCAAATAGTNAAA 460
                      **********************  ******* ************************ ***

consensus_7340#0      GCTTTTGAA--AAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAA 595
consensus_7340#1      GCTTTCTGACCAAGGAAGCAATCGAAAGTTGAGAAAACCACACGCTGTAAGTCAACAAAA 520
                      *****   *  *************************************************

consensus_7340#0      TATGGCTTATTTTAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATGT 655
consensus_7340#1      TATGGCTTATTTCAAAAATTCCTTCTTTTATATATGAGTACAATGCCATTGTGCTAATTT 580
                      ************ ********************************************* *

consensus_7340#0      ACGGATTGATAGTTAATCCGACCATAGGCTACGCCACTGCTCTGCTGAAACGTGTAGGTT 715
consensus_7340#1      ACGGATTGATAGTTAATCCGACCATAGGCCACGCCACTGCTCTGCTGAAACGTGTAGGTT 640
                      ***************************** ******************************

consensus_7340#0      TAACAAAACCTCCCCCCCCCCTCGATGCTCAGTGCGATAATATATTGTTGTGTTGAATTT 775
consensus_7340#1      TG------------TTTTCGTGGAGAAATCCCAGCCACAAATCCTTTTTACAAAAGATT- 687
                      *                 *         **   ** * **    ** **       *** 

consensus_7340#0      ATTTATACCACTTATCAGCTTGAATACGCGTTAGAATTTACGATATAGGAGCATGCAAGC 835
consensus_7340#1      ------ACGATTTAAGTAACGCCAAATGTGTTTG---CTGCAAT----GATTAAACCGGT 734
                            ** * ***         * * * *** *    * * **    **  *  *  * 

consensus_7340#0      AACTGAAACGGGTACACTAGAACAGCGATGGATTACGATCGTACATACCATTGTACCAGT 895
consensus_7340#1      AGAGGGA--GGGGGAGATAGAGGATTTTTGGATAATATTTGCATGGAT-ATTTTGTCATC 791
                      *   * *  ***     ****  *    ***** *   * * *   *  *** *  **  

consensus_7340#0      TGTACCTGTTACGTAGATAGCAATAGGTGCCAGGGCAAAGCGATCGA 942
consensus_7340#1      CGAAACGGGGAGTTCTATTTTCGGGGG-------------------- 818
                       * * * *  *  *  **       **