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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1846 fasta sequence
[CCGGTGCTGCATGGCGGTGAGAGCGAGCGTGTGTGGGAAAGCGAGCGATTGGAAAGGACACAAACACACACACACACACACGCACATACGCTTTTAAAAGGTAGCATAAATAAGTGAAAACCGAACCAATCCGCACGGCCAACACGGATCACACGGAGTTAAAGTTTCAGCAGTCAGAGTCATGAGAGCTTTGGCAACCGATTTCAGTTCAGTTGCTGGAGGTTTGTTGGATTTGTGGGGAAAGGGGAGAGGGGAGGAATACTTCATCATGATTTATAAAGGTAGTGGCAAACAGGGACTAATCCTTCATGGCAGCGCCCCAAAACCAGCGTCGGCAAAGCTGGTGCGTGTGCGGGAAATTTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGTTATCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGT------GTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCA-CCCGGTCTGGGTCGCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGAGAAAGCGCGAGGATTACAGTAGTTTAACCAAAAGAAGAATCTTCATAGCACAGACCCTTAACAAATCCCCACCACCACCACCACCATTCGCTGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCATTGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAG----AGGCAGCGAGAGAAAAACGATAAACAT-AC-GCTACTGGCGTCACTGTTCACTCGTGCCCAGCATTAAACATAAAAATTAAACGCGTCCAGTGGCGGGTTCCCTTTTCATGTTCCAATGATTT-CGTTTGAAAGAGAAACGAAATGGTTTT---------TTTTAATTGCATTCTACCTTACTTTGCCTTTGAAAAGTTTTGCCTTTTAGAAGAAAATTCCTTAAACCCCGAGACTGTTCCCTAGGTTATTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTGTAACCAAAATT-GCCTTTGGATG-AAACCGCTCGATGTGTAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGA--ACAGAGATTGTACAGAGCCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTT--TTTTACATAGGTTTAGCACACTACACAT-CCTTCTCTACACACAGACA--------CGCACATACATAGTTGGTCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCAAATNGGCGANACGTNATTACTCTTTGANNACTCGACCAACACACCCCTCCNCANGTGTGCGTTAGNTGGGNAGNTGTAAGCGTNTTAANGATGNACNTGCATNAATNTNNCCGTACTNACACNNGTNATTGCTTTNNCT]
[+] EMBL BM609124 [CCGGTGCTGCATGGCGGTGAGAGCGAGCGTGTGTGGGAAAGCGAGCGATTGGAAAGGACACAAACACACACACACACACACGCACATACGCTTTTAAAAGGTAGCATAAATAAGTGAAAACCGAACCAATCCGCACGGCCAACACGGATCACACGGAGTTAAAGTTTCAGCAGTCAGAGTCATGAGAGCTTTGGCAACCGATTTCAGTTCAGTTGCTGGAGGTTTGTTGGATTTGTGGGGAAAGGGGAGAGGGGAGGAATACTTCATCATGATTTATAAAGGTAGTGGCAAACAGGGACTAATCCTTCATGGCAGCGCCCCAAAACCAGCGTCGGCAAAGCTGGTGCGTGTGCGGGAAATTTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGTTATCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGTGTGTTCGTGTGTGTGTGAACGCAAAACTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCACCCCGGTCTGGGTCGCAGTATACACGCACGCATGCAGTCACAGATACGACTCGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAA ]
[+] EMBL BM592982 [ ccgGTGCGGGAAATTTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGTTAGCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGT GTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCA CCCGGTCTGGGTCGCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGAGAAAGCGCGAGGATTACAGTAGTTTAACCAAAAGAAGAATCTTCATAGCACAGACCCTTAACAAATCCCCACCACCACCACCACCATTCGCTGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCATTGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAG AGGCAGCGAGAGAAAAACGATAAACATGACTGCTACTGGCGTCACTGTTCACTCGTGCCCAGCATTAAACATAAAAATTAAACGCGTCCAGTGGCGGGTTCCCTTTTCATGTTCCAATGATTTCCGTTTGAAAG ]
[+] EMBL BM586608 [ acgcgtccgGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGCCCAAAGGTAGAGCGTGTGTTAGTGT GTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCAAAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCA CCCGGTCTGGGTCGCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGTAGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGA ]
[+] EMBL BM587725 [ ccgGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCATTGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAGAGAAAGGCAGCGAGAGAAAAACGATAAACAT AC GCTACTGGCGTCACTGTTCACTCGTGCCCAACATTAAACATAAAAATTAAACGCGTCCAGTTGCGGGTTCCCTTTTCATGTTCCAATGATTT CGTTTGAAAGAGAAACGAAATGGTTTT TTTTAATTGCATTCTACCTTACTTTGCCTTTGAAAAGTTTTGCCTTTTAGAAGAAAATTCCTTAAACCCCGAGACTGTTCCCTAGGTTATTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTGTAACCAAAATT GCCTTTGGATG AAACCGCTCGATGTGTAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAAT ]
[+] EMBL BM609420 [ ccgGAGAAACGAAATGGTTTTTTTTTTTAATTTTAATTGCATTCTACCTTACTTTGCCTTTGAAAAGTTTTGTATTTTAGAAGAAAATTCCTTCAACCCCGAGACTGTTCCCTAGGTTATTTTGCAAGTAAAAGTCACAACAAAGGGAGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGACAGCAAACAGTAAATGAAAAATGAGAAATCAATCTATAACTAGATCGAAACTTTAAACAAAATTGTAACCAAAATT GCCTTTGGATGAAAACCGCTCGATGTGTAATGTAAAACAACATAAAAGAGG AGAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGA ACAGAGATTGTACAGAGCCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTT TTTTACATAGGTTTAGCACACTACACAT CCTTCTCTACACACAGACA CGCACATACATAGTTGGTCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCA ]
[+] EMBL CF541948 [ AGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTGTAACCAAAATTAGCCTTTGGATG AAACCGCTCGATGTGTAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATNAAATTGAACACAGAGATTGTACAGAACCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATACCTTAAAATCCATTACATATATATTATGGCTTGATACCATNTAGTNATAAATAGGTTTAGCACACTACACATACCTTCTCTACACACACACACACACACCCACACACACATAGTTGGTCCCTTCCATCCTTCCAAATGTATATGTAGACCGTAGAGAGTCCGCAAATNGGCGANACGTNATTACTCTTTGANNACTCGACCAACACACCCCTCCNCANGTGTGCGTTAGNTGGGNAGNTGTAAGCGTNTTAANGATGNACNTGCATNAATNTNNCCGTACTNACACNNGTNATTGCTTTNNCT]
consensusID : consensus_7351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CCGCGGACGCGTGGGTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGACAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTTGTAACCAAAATTGCCTTTGGATGAAAACCGCTCGATGTGTAATGTAAAACAACATAAAAGAGGAGAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAACCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACTACACATCCTTCTCTACACACAGACACACACATACATAATTGGCCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCAAATTGGCGAAACGTTATTTCTCTTTTTAAACTCGCCAAAACACCCTCCCCAGTGTG]
[+] EMBL BM632308 [CCGCGGACGCGTGGGTTTGCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGTTTTTAATTGTTATAGACAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGATCAAAACTTTAAACAAAATTTGTAACCAAAATTGCCTTTGGATGAAAACCGCTCGATGTGTAATGTAAAACAACATAAAAGAGGAGAAACCCGAACAAGTAAACGCAAAAGCCACTTCTGAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAATGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAACCAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTTAAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACTACACATCCTTCTCTACACACAGACACACACATACATAATTGGCCCCTTCCATCCTTCCAAATGTAAATGTAGACCGTAAAGAATCCGCAAATTGGCGAAACGTTATTTCTCTTTTTAAACTCGCCAAAACACCCTCCCCAGTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7351#0 CCGGTGCTGCATGGCGGTGAGAGCGAGCGTGTGTGGGAAAGCGAGCGATTGGAAAGGACA 60
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 CAAACACACACACACACACACGCACATACGCTTTTAAAAGGTAGCATAAATAAGTGAAAA 120
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 CCGAACCAATCCGCACGGCCAACACGGATCACACGGAGTTAAAGTTTCAGCAGTCAGAGT 180
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 CATGAGAGCTTTGGCAACCGATTTCAGTTCAGTTGCTGGAGGTTTGTTGGATTTGTGGGG 240
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 AAAGGGGAGAGGGGAGGAATACTTCATCATGATTTATAAAGGTAGTGGCAAACAGGGACT 300
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 AATCCTTCATGGCAGCGCCCCAAAACCAGCGTCGGCAAAGCTGGTGCGTGTGCGGGAAAT 360
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 TTCCCCGATTTTGCTACATATTCGCAGATAGCAGGATGGAGCAAAGTGAGTGATACGAGT 420
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 TATCCGTTAACCGAGACCCAAGATACGTCCAACTCAAATTGCACAGCATAAAGGGATGGC 480
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 CCAAAGGTAGAGCGTGTGTTAGTGTGTGTGTGTGTGAACGCAAAGCTTCCCTCATTCGCA 540
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 AAGACAGTAAAACACATCATCAATTCCCCAATGTGATGTGGTCATCACCCGGTCTGGGTC 600
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 GCAGTATACACGCACGCATGCAATCACAGATACGACTGGTGAACATGAAACAACGTATGT 660
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 AGAGATGCAAAATCAAAGCGATATAGTTATTACGGTAGGCAATGTGAGAAAGCGCGAGGA 720
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 TTACAGTAGTTTAACCAAAAGAAGAATCTTCATAGCACAGACCCTTAACAAATCCCCACC 780
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 ACCACCACCACCATTCGCTGAAATCGTTCACAAAGTAGCAAAGCAAGCAGGTCATGCCAT 840
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 TGGTGATAAGGATGCGCACGTATACGTGGCATATAGCTGGGCCATCGATAGAGAGAGAGA 900
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 GGCAGCGAGAGAAAAACGATAAACATACGCTACTGGCGTCACTGTTCACTCGTGCCCAGC 960
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 ATTAAACATAAAAATTAAACGCGTCCAGTGGCGGGTTCCCTTTTCATGTTCCAATGATTT 1020
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 CGTTTGAAAGAGAAACGAAATGGTTTTTTTTAATTGCATTCTACCTTACTTTGCCTTTGA 1080
consensus_7351#1 ------------------------------------------------------------
consensus_7351#0 AAAGTTTTGCCTTTTAGAAGAAAATTCCTTAAACCCCGAGACTGTTCCCTAGGTTATTTT 1140
consensus_7351#1 -----------------------------------------CCGCGGAC-GCGTGGGTTT 18
* * * ** ***
consensus_7351#0 GCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGT 1200
consensus_7351#1 GCAAGTAAAAGTCACAACAAAGGGGGCAGTATAAACATGCGAAACAAAACAAAAAGGAGT 78
************************************************************
consensus_7351#0 TTTTAATTGTTATAGAGAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGA 1260
consensus_7351#1 TTTTAATTGTTATAGACAGCAAACAGCAAATGAAAAATGAGAAATCAATCTATAACTAGA 138
**************** *******************************************
consensus_7351#0 TCAAAACTTTAAACAAAATT-GTAACCAAAATTGCCTTTGGATGAAA-CCGCTCGATGTG 1318
consensus_7351#1 TCAAAACTTTAAACAAAATTTGTAACCAAAATTGCCTTTGGATGAAAACCGCTCGATGTG 198
******************** ************************** ************
consensus_7351#0 TAACGTAAAACAACGTAAAAGAGGAAAAAACCCGAACAAGTAAACGCAAAAGCCACTTCT 1378
consensus_7351#1 TAATGTAAAACAACATAAAAGAGGAGAAA-CCCGAACAAGTAAACGCAAAAGCCACTTCT 257
*** ********** ********** *** ******************************
consensus_7351#0 GAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAA 1438
consensus_7351#1 GAAAACTTAATAGCACACATTGCAACTAGCCAAAATTAAACACAAAACAACGAAAATGAA 317
************************************************************
consensus_7351#0 TGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAGC 1498
consensus_7351#1 TGCAAGTGAAAATGAGAACCTTAAGAAAACGTATTAAATTGAACAGAGATTGTACAGAAC 377
********************************************************** *
consensus_7351#0 CAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTT 1558
consensus_7351#1 CAGAACAGAAAATCATTACTGCAACAGACCAAACATACAAAGTCGGGTGTCGTATTCCTT 437
************************************************************
consensus_7351#0 AAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACT 1618
consensus_7351#1 AAAATCCATTACATATATATTATGGCTTGATACCATTTTTTTACATAGGTTTAGCACACT 497
************************************************************
consensus_7351#0 ACACATCCTTCTCTACACACAGACACGCACATACATAGTTGGTCCCTTCCATCCTTCCAA 1678
consensus_7351#1 ACACATCCTTCTCTACACACAGACACACACATACATAATTGGCCCCTTCCATCCTTCCAA 557
************************** ********** **** *****************
consensus_7351#0 ATGTAAATGTAGACCGTAAAGAATCCGCAAATNGGCGANACGTNATTACTCTTTGANNAC 1738
consensus_7351#1 ATGTAAATGTAGACCGTAAAGAATCCGCAAATTGGCGAAACGTTATTTCTCTTTTTAAAC 617
******************************** ***** **** *** ****** **
consensus_7351#0 TCGACCAACACACCCCTCCNCANGTGTGCGTTAGNTGGGNAGNTGTAAGCGTNTTAANGA 1798
consensus_7351#1 TCG-CCAAAACACCCTCCCCAGTGTG---------------------------------- 642
*** **** ****** ** ***
consensus_7351#0 TGNACNTGCATNAATNTNNCCGTACTNACACNNGTNATTGCTTTNNCT 1846
consensus_7351#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||