|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1294 fasta sequence
[CCGCCCACGCGTCCGGCGACCCGCAAAAACCCGCAGAGCAGCGTGCGATGGTGATGATGGATTATTTCGACATGTTTCCACACATGCTCTTGCAAACGGACGGCGGGAGCCTGTGCGTGTGCTTCCGATTGCGCTTAACCGCCTAATGATGACAGCATCGTAAGCGGCAGAGAAGCGCAAGTAAAAAAGACCCTTCCCCCCTCTCCAATATAGAAGCCATTCCCTATAACCCCGCGCGGTATCCCCCGGTATATTAGTAAGGTGAAACACTACGTAGTAGGCGATGCTAACTATTAAGCGCGCGCGCGCCTCTTGTGAAGAACGTTTGTGCGTAAATAGGCAAGAGTTAGTGGCAGTGGTTAGTTAGAACAGAGGGGAGCGCGAACATTAATCAATCTCTGGTTGCAGCAGCAGCGAGTTTGCGTAGCGAGATATGACCTATACCTCAAAACTAGTGTGCAATTTTACTCTCTTTTCATTTGTGTGCCGCCTTTTTCTTGTTAGCAAATAGATTTACATCGATAATCAGTCGAAAGAGCGAAGCGGGCGGGCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGTCAAAA--TTCAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGC-AAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCACTACGAGAGAGGTGAAAACAAGGTTCAGGAAATAAAAGCAAAAGCCTATCCCCGCGATTA]
[+] EMBL BM581178 [CCGCCCACGCGTCCGGCGACCCGCAAAAACCCGCAGAGCAGCGTGCGATGGTGATGATGGATTATTTCGACATGTTTCCACACATGCTCTTGCAAACGGACGGCGGGAGCCTGTGCGTGTGCTTCCGATTGCGCTTAACCGCCTAATGATGACAGCATCGTAAGCGGCAGAGAAGCGCAAGTAAAAAAGACCCTTCCCCCCTCTCCAATATAGAAGCCATTCCCTATAACCCCGCGCGGTATCCCCCGGTATATTAGTAAGGTGAAACACTACGTAGTAGGCGATGCTAACTATTAAGCGCGCGCGCGCCTCTTGTGAAGAACGTTTGTGCGTAAATAGGCAAGAGTTAGTGGCAGTGGTTAGTTAGAACAGAGGGGAGCGCGAACATTAATCAATCTCTGGTTGCAGCAGCAGCGAGTTTGCGTAGCGAGATATGACCTATACCTCAAAACTAGTGTGCAATTTTACTCTCTTTTCATTTGTGTGCCGCCTTTTTCTTGTTAGCAAATAGATTTACATCGATAATCAGTCGAAAGAGCGAAGCGGGCGGGCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGAT TTAT ATATTACATTCGTCAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTG ]
[+] EMBL BX627135 [ GCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGTCAAAA TTCAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGC AAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGNTAGATGTTGAGTAGAATATTATG ]
[+] EMBL BM581281 [ ccgAGATGCGGCGTTAGTTTTGAAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGTCAAAA TTCAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCACTACGAGAGAGGTGAAAACAAGGTTCAGGAAATAAAAGCA ]
[+] EMBL BX620617 [ AGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCCAAGC AAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCACTACGAGAGAGGTGAAAACAAGGTTCAGGAAATAAAAGCAAAAGCCTATCCCCGCGATTA]
consensusID : consensus_7354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[AAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATTTATATATTACATTCGTCAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATTCGTGTTACTATTCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATACTGAGTTAAACAAACGACATAGTAGGGGAACGAACGAAAAAAAGGGTAAACACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACACCACCCCCAGAAGAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAAGGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATATTATGCCTCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCA]
[+] EMBL BX624051 [AAATAATTCATTCAGTGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATTTATATATTACATTCGTCAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCTCTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATTCGTGTTACTATTCTGTATGCTAAGCAGCGATAAGGAAATGGTAGAATACTGAGTTAAACAAACGACATAGTAGGGGAACGAACGAAAAAAAGGGTAAACACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACACCACCCCCAGAAGAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAAGGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATATTATGCCTCGGCCTCATTATATACATATACTATATTAAAATTAGCAAGAGCACGATTATAGCA]
consensusID : consensus_7354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence
[GGCAAGAATCGGCACGTGGTGTTATTATGCTGTATGCTAACGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTGTATTAAAATTAGCAAGAGCACGACTTATAGCACTACGAGAGAGGTGAAATCACAAGGTTCAGGAAATAAAAGGCAAAAGCCTATCCCCGCGATTACAAGGCGATTATACACAGAAAAAAGTACGCCCAAGCAAGACGGCCGG]
[+] EMBL BX467938 [GGCAAGAATCGGCACGTGGTGTTATTATGCTGTATGCTAACGCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAACGAAAAAAGGGTAAACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACACCAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAGTTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGTAATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCCAACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATTTAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATTATGCCGCGGCCTCATTATATACATATACTGTATTAAAATTAGCAAGAGCACGACTTATAGCACTACGAGAGAGGTGAAATCACAAGGTTCAGGAAATAAAAGGCAAAAGCCTATCCCCGCGATTACAAGGCGATTATACACAGAAAAAAGTACGCCCAAGCAAGACGGCCGG]
[+] EMBL BX620378 [ CAATATAAAACTGAACTAAAGGCGGAAATCAAAAGCAAAGCAAAGGGGGGga ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7354#0 CCGCCCACGCGTCCGGCGACCCGCAAAAACCCGCAGAGCAGCGTGCGATGGTGATGATGG 60
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 ATTATTTCGACATGTTTCCACACATGCTCTTGCAAACGGACGGCGGGAGCCTGTGCGTGT 120
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 GCTTCCGATTGCGCTTAACCGCCTAATGATGACAGCATCGTAAGCGGCAGAGAAGCGCAA 180
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 GTAAAAAAGACCCTTCCCCCCTCTCCAATATAGAAGCCATTCCCTATAACCCCGCGCGGT 240
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 ATCCCCCGGTATATTAGTAAGGTGAAACACTACGTAGTAGGCGATGCTAACTATTAAGCG 300
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 CGCGCGCGCCTCTTGTGAAGAACGTTTGTGCGTAAATAGGCAAGAGTTAGTGGCAGTGGT 360
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 TAGTTAGAACAGAGGGGAGCGCGAACATTAATCAATCTCTGGTTGCAGCAGCAGCGAGTT 420
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 TGCGTAGCGAGATATGACCTATACCTCAAAACTAGTGTGCAATTTTACTCTCTTTTCATT 480
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 TGTGTGCCGCCTTTTTCTTGTTAGCAAATAGATTTACATCGATAATCAGTCGAAAGAGCG 540
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 AAGCGGGCGGGCGGGCGGGGTCGAAAAGATGCGGCGTTAGTTTTGAAATAATTCATTCAG 600
consensus_7354#1 ---------------------------------------------AAATAATTCATTCAG 15
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 TGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATATTATACATATTACATTCGT 660
consensus_7354#1 TGAGAGCTCACGATTACAAAGTAATGTTTGGCACATAGATT---TATATATTACATTCGT 72
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 CAAAATT--CAATCAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCT 718
consensus_7354#1 CAAAATTTTCAAACAAAACATTCTCAAATGAGCTGTGCGCTCTGCAAAATTAATTTATCT 132
consensus_7354#2 ------------------------------------------------------------
consensus_7354#0 CTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATGCGTGTTATTATGCTGTATGCTAA- 777
consensus_7354#1 CTTATTTTGCGCGTAAAGTCGTAACTTTATCTTATTCGTGTTACTATTCTGTATGCTAA- 191
consensus_7354#2 -------------------GGCAAGAATCGGCACGTGGTGTTATTATGCTGTATGCTAAC 41
* ** * ****** *** ***********
consensus_7354#0 GCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAAC 837
consensus_7354#1 GCAGCGATAAGGAAATGGTAGAATACTGAGTTAAACAAACGACATAGTAGGGGAACGAAC 251
consensus_7354#2 GCAGCGATAAGGAAATGGTAGAATATTGAGTTAAACAAACGATATAGTAGGGGAACGAAC 101
************************* **************** *****************
consensus_7354#0 GAAAAAA-GGGTAAACAC--TACATTACAAAGCTGAAAACGAAACGTATCACACGTACAC 894
consensus_7354#1 GAAAAAAAGGGTAAACACACTACATTACAAAGCTGAAAACGAAACGTATCACACGTACAC 311
consensus_7354#2 GAAAAAA-GGGTAAACAC--TACATTACAAAGCTGAAAACGAAACGTATCACACGTACAC 158
******* ********** ****************************************
consensus_7354#0 CAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAG 954
consensus_7354#1 CAGACGCGGTACATACAAACACACACCACCCC-CA------------GAAGAAGAGTTAG 358
consensus_7354#2 CAGACGCGGTACATACAAACACACCCCACCCCACACGGTTATCCGATGGAAAAGAGTTAG 218
************************ ******* ** * * *********
consensus_7354#0 TTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGT 1014
consensus_7354#1 TTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGT 418
consensus_7354#2 TTAGCTCAATATAAAACTGAACTAAAGCCGGAAATCAAAAGCAAAGCAAAGGGGGGAAGT 278
************************************************************
consensus_7354#0 AATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCC 1074
consensus_7354#1 AATTAACGCTTTGAAGGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCC 478
consensus_7354#2 AATTAACGCTTTGAACGCGAGAACAGTTAGGATTGAATCCACATTTTTAGAGGTGTAGCC 338
*************** ********************************************
consensus_7354#0 AACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATT 1134
consensus_7354#1 AACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATT 538
consensus_7354#2 AACGCCTTTTTGTTTCGAGAAGCAAAGGGGTTGCACTTTATTGCGAGTTTTGTCCCCATT 398
************************************************************
consensus_7354#0 TAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATAT--TATGCCGCGGCCTCATTATA 1192
consensus_7354#1 TAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATATATTATGCCTCGGCCTCATTATA 598
consensus_7354#2 TAATTCAAATGCGCTTCGTTAGATGTTGAGTAGAATAT--TATGCCGCGGCCTCATTATA 456
************************************** ****** *************
consensus_7354#0 TACATATACTATATTAAAATTAGCAAGAGCACGA-TTATAGCACTACGAGAGAGGTGAAA 1251
consensus_7354#1 TACATATACTATATTAAAATTAGCAAGAGCACGA-TTATAGCA----------------- 640
consensus_7354#2 TACATATACTGTATTAAAATTAGCAAGAGCACGACTTATAGCACTACGAGAGAGGTGAAA 516
********** *********************** ********
consensus_7354#0 ACAAGGTTCAGGAAATAAAAGCAAAAGCCTATCCCCGCGATTA----------------- 1294
consensus_7354#1 ------------------------------------------------------------
consensus_7354#2 TCACAAGGTTCAGGAAATAAAAGGCAAAAGCCTATCCCCGCGATTACAAGGCGATTATAC 576
consensus_7354#0 ---------------------------------
consensus_7354#1 ---------------------------------
consensus_7354#2 ACAGAAAAAAGTACGCCCAAGCAAGACGGCCGG 609
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||