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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1320 fasta sequence
[GTCCACGATACTGCCGCGGTGCGCATCCGAATTGTGGCACAGATATCGCAGTCGTCGTTGCGAAACCAATATGTGCCCGTTCGGATCGGATATAACCACCGCCAAAATCACCAACATCATCATCACCATCATCGTCATCATCTTGCTCAAATGGCCAAACCAACACGAGAACAACAAAACAAAAACTGTGCCATCGTAAGGCTGGTAGTTACTAGGTGCCACGTAGTTTATCGTAAAGAGACAGAGCGACCATTTGTATGCTGGCAACATCATGCGACAATACTGGTCGCGTGAAATACACACCGTATCATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACAGGATGCTTAATTGCGCACAGCGCGCCCCGTGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTAAGTGCACAAAAGTGAGTCTTTTCATTCGATACCAAAGAGCTTGATTTCTAGTCTAGAAGTATAATTACATTAAAGCAACATTTTCGATCTGCGAAAGATACCCGTTGCCGGAACGTGGTACTTTCTTTTACCTACTCAAATACTGCATGTTTGTAATATACCCTACACTTTTTTCTACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTT-AAAAAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATAAGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGACAATTCTTAGATAAATTTGGAATATAAAATTTGTATCTGCTCATCTGTGTCAAATATCAGGTACCAGTGGGTACATGCGCAAAAGAGGAAGGACAATTAAAAGCAAATACTTCAATATTTCATCAATCTTGTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGTGTAGTGAACCGGAAGGTTTGAAAAAAAACACGCATATATCAATCCACTCAATAACTGACCAGTAATAAACATACGTGTACGTTTTGAACATTGCGTGATTGTGACGAAGAATATCGCTCCCGTTCCGACCGTGTAAAATTGCACACACGCGTGTGTGGTGTGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAATCCAAGCCCAATGTATCTAGACAAGGTAAACCGTTTCAAATACAACACCTCG]
[+] EMBL BX618729 [GTCCACGATACTGCCGCGGTGCGCATCCGAATTGTGGCACAGATATCGCAGTCGTCGTTGCGAAACCAATATGTGCCCGTTCGGATCGGATATAACCACCGCCAAAATCACCAACATCATCATCACCATCATCGTCATCATCTTGCTCAAATGGCCAAACCAACACGAGAACAACAAAACAAAAACTGTGCCATCGTAAGGCTGGTAGTTACTAGGTGCCACGTAGTTTATCGTAAAGAGACAGAGCGACCATTTGTATGCTGGCAACATCATGCGACAATACTGGTCGCGTGAAATACACACCGTATCATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACAGGATGCTTAATTGCGCACAGCGCGCCCCGTGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTAAGTGCAC ]
[+] EMBL BX608784 [ AATACACACCGTATCATGGACATGGGCTCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACATGATGCTTAATTGCGCACAGCGCTCCCCGTGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTAAGTGCACAAAAGTGAGTCTTTTCATTCGATACCAAAGAGCTTGATTTCTAGTCTAGAAGTATAATTACATTAAAGCAACATTTTCGATCTGCGAAAGATACCCGTTGCCGGAACGTGGTACTTTCTTTTACCTACTCAAATACTGCATGTTTGTAATATACCCTACACTTTTTTCTACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTT AAAAAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATAAGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGACAATTCTTAGATAAATTTGGAATATAAAATTTGTATCTGCTCATCTGTGTCAAATATCAGGTACCAG ]
[+] EMBL BX615728 [ TACACACCGTATCAGGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTCGGCTTTCGAAAAGGGGTCGAACTGCAGTAGGGTAGACAGGATGCTTAATTGCGCACAGCGCGCCCCGGGCTGTGGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCACCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTT ]
[-] EMBL BX611349 [ AACGTGGTACTTTCTTTTACCTACTCAAATACTGCATGTTTGTAATATACCCTACACTTTTTTCTACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTTAAAAAAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATAAGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGACAATTCTTAGATAAATTTGGAATATAAAATTTGTATCTGCTCATCTGTGTCAAATATCAGGTACCAGTGGGTACATGCGCAAAAGAGGAAGGACAATTAAAAGCAAATACTTCAATATTTCATCAATCTTGTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGTGTAGTGAACCGGAAGGTTTGAAAAAAAACACGCATATATCAATCCACTCAAT ]
[+] EMBL BX623850 [ AATCTTGTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGTGTAGTGAACCGGAAGGTTTGAAAAAAAACACGCATATATCAATCCACTCAATAACTGACCAGTAATAAACATACGTGTACGTTTTGAACATTGCGTGATTGTGACGAAGAATATCGCTCCCGTTCCGACCGTGTAAAATTGCACACACGCGTGTGTGGTGTGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAATCCAAGCCCAATGTATCTAGACAAGGTAAACCGTTTCAAATACAACACCTCG]
[+] EMBL BM620470 [ AACATTGCGTGATTGTGACGAAGAATATCGCTCCCGTTCCGACCGTGTAAAATTGCACACAAGCGTGTGTGGTGTGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAATCCAAGCCCAATGTATCTAGACAAGGTAAACCGTTTCAAA ]
consensusID : consensus_7361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence
[AGATACCCCCGAGTTNAATTTATGTAAAGAGACAGCAGCGACATTTGTATTCTGGCACCATCATGCGACAATACTGGTCGCGTAAATAAACACCGTATACATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTACGGCTTTCGAAAAGGGGTACGAACTGAGTANGGTAGACAGGATGCTATAATATGCGCACAGTGNCGCCCCGTGCTAGTAGGCTAGCGAGAACTTATATTATAGAAACAGNNATAATAGGACNTTTATAAATTGGGCACCGGCTTTTTACTAAACAGGCATNGCGCCACCTATACATAAGAANATNTCACCCCTGATAAGGCTANATACCTAACACACCCCTCAAAGGTNGGCCCAACACGACAAGTTAGGAAGGTACTCANAGATGCCAANCATACGGANATAAACCCCAAACAGAGGCTATGGACTATATTCACTAAAGTNCCTTCAAGCAAACAGATCANTTAACACTNTAAACATATTAAACACAGACACANACCACATATANNACTCCGGCCAGCTCACTAGGCGGNACAACCGNAATAANACCCCCGGNTAGACACCGGGGGAAAACGGTATGGGNNANCCCGTTATNTCCCTATATTAATANAACCCACCTTNAANCTCCCAAAATAAATAACCTTAGGGCNAACATTGGGCTAATACGGGATACAACANAAACTNANTACCCCCCCCCACTCTACNACCATTCATAAATATAATACCTAAAACCNCNGCTAACCACACCCTTTGCCNCACGAACCAACACNATTGGCACCCCCCACTATTATNNAACCCCCCTANTTGCCNACCCGCAGCCTCTTNNGCACATANCACCATCCCATNATANCAACCAAACANAACCNTACATAACATCACNACACTACACCACACCACCTTACCGCACANCCCGNTAAAANNCCACAACNAACNGACAAACNCCACAAACAACATGGGTGNNGCATNCGCGGCAGCACCNGCCTCANCNACACAAGCCCGGGGGNCGNNTACCCNCACACACAATCACCTANCCACAACACACACTAACCCACCCATCTGGGACGAGCGTACCCACTNGGCCCATGTATNGGGCTACCACCATGGCCGGCACACCACCCCCCCNGATAACNATAAAAAAGTCATACGGGGACGNNTNGCACNGCANCAGGACATNACATTGGGCCTCCACCCTCAGGCGGGCCTCCACCCG]
[+] EMBL AL693398 [AGATACCCCCGAGTTNAATTTATGTAAAGAGACAGCAGCGACATTTGTATTCTGGCACCATCATGCGACAATACTGGTCGCGTAAATAAACACCGTATACATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTACGGCTTTCGAAAAGGGGTACGAACTGAGTANGGTAGACAGGATGCTATAATATGCGCACAGTGNCGCCCCGTGCTAGTAGGCTAGCGAGAACTTATATTATAGAAACAGNNATAATAGGACNTTTATAAATTGGGCACCGGCTTTTTACTAAACAGGCATNGCGCCACCTATACATAAGAANATNTCACCCCTGATAAGGCTANATACCTAACACACCCCTCAAAGGTNGGCCCAACACGACAAGTTAGGAAGGTACTCANAGATGCCAANCATACGGANATAAACCCCAAACAGAGGCTATGGACTATATTCACTAAAGTNCCTTCAAGCAAACAGATCANTTAACACTNTAAACATATTAAACACAGACACANACCACATATANNACTCCGGCCAGCTCACTAGGCGGNACAACCGNAATAANACCCCCGGNTAGACACCGGGGGAAAACGGTATGGGNNANCCCGTTATNTCCCTATATTAATANAACCCACCTTNAANCTCCCAAAATAAATAACCTTAGGGCNAACATTGGGCTAATACGGGATACAACANAAACTNANTACCCCCCCCCACTCTACNACCATTCATAAATATAATACCTAAAACCNCNGCTAACCACACCCTTTGCCNCACGAACCAACACNATTGGCACCCCCCACTATTATNNAACCCCCCTANTTGCCNACCCGCAGCCTCTTNNGCACATANCACCATCCCATNATANCAACCAAACANAACCNTACATAACATCACNACACTACACCACACCACCTTACCGCACANCCCGNTAAAANNCCACAACNAACNGACAAACNCCACAAACAACATGGGTGNNGCATNCGCGGCAGCACCNGCCTCANCNACACAAGCCCGGGGGNCGNNTACCCNCACACACAATCACCTANCCACAACACACACTAACCCACCCATCTGGGACGAGCGTACCCACTNGGCCCATGTATNGGGCTACCACCATGGCCGGCACACCACCCCCCCNGATAACNATAAAAAAGTCATACGGGGACGNNTNGCACNGCANCAGGACATNACATTGGGCCTCCACCCTCAGGCGGGCCTCCACCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7361#0 GTCCACGATACTGCCGCGGTGCGCATCCGAATTGTGGCACAGATATCGCAGTCGTCGTTG 60
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 CGAAACCAATATGTGCCCGTTCGGATCGGATATAACCACCGCCAAAATCACCAACATCAT 120
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 CATCACCATCATCGTCATCATCTTGCTCAAATGGCCAAACCAACACGAGAACAACAAAAC 180
consensus_7361#1 ------------------------------------------------------------
consensus_7361#0 AAAAACTGTGCCATCGTAAGGCTGGTAGTTACTAGGTGCCACGTAGTTTATC----GTAA 236
consensus_7361#1 ---------------------------------AGATACCCCCGAGTTNAATTTATGTAA 27
** * ** * **** * ****
consensus_7361#0 AGAGACAG-AGCGACCATTTGTATGCTGGCAACATCATGCGACAATACTGGTCGCGTGAA 295
consensus_7361#1 AGAGACAGCAGCGAC-ATTTGTATTCTGGCACCATCATGCGACAATACTGGTCGCGT-AA 85
******** ****** ******** ****** ************************* **
consensus_7361#0 ATACACACCGTAT-CATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGT-CGGC 353
consensus_7361#1 ATAAACACCGTATACATGGACATGGGCGCAATAGGCAGAGCAAAGCAAACGTAGTACGGC 145
*** ********* ***************************************** ****
consensus_7361#0 TTTCGAAAAGGGGT-CGAACTGCAGTAGGGTAGACAGGATGCT-TAAT-TGCGCACAGCG 410
consensus_7361#1 TTTCGAAAAGGGGTACGAACTG-AGTANGGTAGACAGGATGCTATAATATGCGCACAGTG 204
************** ******* **** *************** **** ********* *
consensus_7361#0 C-GCCCCGTGCTGT--GGCTAGCGAGAACTTTTTTTTCAGTTTAATGACTTATACTGGCA 467
consensus_7361#1 NCGCCCCGTGCTAGTAGGCTAGCGAGAACTTATATTATAG---AAACAGNNATAATAGGA 261
********** *************** * ** ** ** * *** * * *
consensus_7361#0 CCGCCTTTTCTAAAGATGCGCACTATCATAGAATTCACCCGATAGGCTTTCCTAAACCTA 527
consensus_7361#1 CN----TTTATAAAT-TGGGCACCGGCTT----TTTACTAAACAGGCATNGCGCCACCTA 312
* *** **** ** **** * * ** ** * **** * * *****
consensus_7361#0 AGTGCACAAAAGTGAGTCTTTTCATTCGATACCAAAGAGCTTGA-----TTTCTAGTCTA 582
consensus_7361#1 --TACATAAGAANATNTCACCCCTGATAAGGCTANATACCTAACACACCCCTCAAAGGTN 370
* ** ** * ** * * * * * * ** ** * *
consensus_7361#0 GAAGTATAATTACATTAAAGCAACATTTTC-GATCTGCGAAAGATACCCGT-----TGCC 636
consensus_7361#1 GGCCCAACACGACAAGTTAGGAAGGTACTCANAGATGCCAANCATACGGANATAAACCCC 430
* * * *** ** ** * ** * *** ** **** **
consensus_7361#0 GGAACGTGGTACTTTCTTTTACCTACTCAAATAC-TGCATGTTTGTAATATACCCTACAC 695
consensus_7361#1 AAACAGAGGCTATGGACTATATTCACTAAAGTNCCTTCAAGCAAACAGATCANTTAACAC 490
* * ** * * ** *** ** * * * ** * * * ****
consensus_7361#0 TTTTTTC-TACCGTACGCTGCAGAGTTGCACCTTTACCTTGACGGTTGCATTCTCTTAAA 754
consensus_7361#1 TNTAAACATATTAAACACAGACACANACCACATATANNACTCCGGCCA-GCTCACTAGGC 549
* * * ** ** * * *** * ** *** ** **
consensus_7361#0 AAAACTATAAAAATCAAAACTACTACTAGCAATAGCAACAAAATGGGCAGCGACAAAATA 814
consensus_7361#1 GGNACAACCGNAATAANACCCCCGGNTAGACACCGGGGGAAAACGGT--ATGGGNNANCC 607
** * *** * * * * *** * * **** ** * *
consensus_7361#0 AGCGGGTTTCAGAAAATCTTAGAAACTAGACATTGTTGATACATGCATGTGGTAATGCGA 874
consensus_7361#1 CGTTATNTCCCTATATTAATANAACCCACCTTNAANCTCCCAAAATAAATAACCTTAGGG 667
* * * * * * ** ** * * * * * * *
consensus_7361#0 CAATTCTTAGATAAATTTGGAATATAAAATTTG-TATCTGCTCATCTGTG-TCAAATATC 932
consensus_7361#1 CNAACATTGGGCTAATACGGGATACAACANAAACTNANTACCCCCCCCCACTCTACNACC 727
* * ** * *** ** *** ** * * * * * * ** * * *
consensus_7361#0 AGGTACCAGTG-GGTACATGCGCAAAAGAGGAAGGACAATTAAAAGCAAATACTTCAATA 991
consensus_7361#1 ATTCATAAATATAATACCTAAAACCNCNGCTAACCACACCCTTTGCCNCACGAACCAACA 787
* * * * *** * ** *** * * *** *
consensus_7361#0 TT-TCATCAATCTT-GTCATAATACAGCGTCATAAAATTTTGAAACATGTTTACTTAAGT 1049
consensus_7361#1 CNATTGGCACCCCCCACTATTATNNAACCCCCCTANTTGCCNACCCGCAGCCTCTTNNGC 847
* ** * ** ** * * * * * * * *** *
consensus_7361#0 GTAGTGAACCGG--------AAGGTTTGAAAAAAAACACGCATA-TATCAATCCACTCAA 1100
consensus_7361#1 ACATANCACCATCCCATNATANCAACCAAACANAACCNTACATAACATCACNACACTACA 907
* *** * ** * ** * **** **** **** *
consensus_7361#0 TAACTGACCAGTAATAAACATACGTGTA---CGTTTTGAACATTGCGTGATTGTGACGAA 1157
consensus_7361#1 CCACACCACCTTACCGCACANCCCGNTAAAANNCCACAACNAACNGACAAACNCCACAAA 967
** * ** *** * ** * * * ** **
consensus_7361#0 GAATATCGCTCCCGT-TCCG-------ACCGTGTAAAATTGCACACACGCGTGTGTGGTG 1209
consensus_7361#1 CAACATGGGTGNNGCATNCGCGGCAGCACCNGCCTCANCNACACAAGCCCGGGGGNCGNN 1027
** ** * * * * ** *** * **** * ** * * *
consensus_7361#0 TGTCCTGTTTTAGGATTTTGTTGGCAATAGTATACATCGTATGGTTGATATTAGCAGAAT 1269
consensus_7361#1 TACCCNCACACACAATCAC-CTANCCACAACACACACTAACCCACCCATCTGGGACGAGC 1086
* ** * ** * * * * * *** ** * * **
consensus_7361#0 CCAAGCCCAATGTATCTAGACAAGGTAA--ACCGTTTCAAATACAACACCTCG------- 1320
consensus_7361#1 GTACCCACTNGGCCCATGTATNGGGCTACCACCATGGCCGGCACACCACCCCCCCNGATA 1146
* * * * * * ** * *** * * *** **** *
consensus_7361#0 ------------------------------------------------------------
consensus_7361#1 ACNATAAAAAAGTCATACGGGGACGNNTNGCACNGCANCAGGACATNACATTGGGCCTCC 1206
consensus_7361#0 -----------------------
consensus_7361#1 ACCCTCAGGCGGGCCTCCACCCG 1229
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||