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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 935 fasta sequence
[CCGGCGCCAGTAGCTCGCACGGAAATCTGCTCGTTTTCCCTCTGCTTCCAAGTACCTAGTGCAACTAATTGTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA-CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGATATAGGCGAACACATACAGCTCAAGCAGGGGCTGCTGTTGCGCGAGTTTAACGTACTGCTCCAGCTGCTCAAACGCGTGATGGACGACCTGTCCGACAACTACGCCCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGAACGAACGTCTACGAGCGCTTAAAGGAAGAGCAACAACGTAAGCTAATTCGCTCCCGACCATCATCATCTCTTTAATTCCACTAGCGTTTAATAAACAGTTACACACACACACACGCCCTTGACGATAAAAAAAAAAAAA]
[+] EMBL BM651939 [CCGGCGCCAGTAGCTCGCACGGAAATCTGCTCGTTTTCCCTCTGCTTCCAAGTACCTAGTGCAACTAATTGTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGA ]
[+] EMBL BX619593 [ TTNCCCTCTGCTTCCAAGTACCTAGTGCAACTGATTGTTTCACATGCTGGAACAATCGTGACCAATCCAAACGCTTTGATTTAGCTG TTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAGCCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGTACGTACAAAGCGATGAGCGAAGCGGATGAGANNGAGCTGCTGTCCCGAACaa ]
[+] EMBL CNS08QKI [ GTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAA GGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAACCCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGC ]
[+] EMBL BX612357 [ AATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGATATAGGCGAACACATACAGCTCAAGCAGGGGCTGCTGTTGCGCGAGTTTAACGTACTGCTCCAGCTGCTCAAACGCGTGATGGACGACCTGTCCGACAACTACGCCCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGAACGAACGTC ]
[+] EMBL AGA285915 [ ACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCC ]
[-] EMBL AGA284557 [ GGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGATATAGGCGAACACATACAGCTCAAGCAGGGGCTGCTGTTGCGCGAGTTTAACGTACTGCTCCAGCTGCTCAAACGCGTGATGGACGACCTGTCCGACAACTACGCCCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGAACGAACGTCTACGAGCGCTTAAAGGAAGAGCAACAACGTAAGCTAATTCGCTCCCGACCATCATCATCTCTTTAATTCCACTAGCGTTTAATAAACAGTTACACACACACACACGCCCTTGACGATAAAAAAAAAAAAA]
consensusID : consensus_7366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[GCAGAATCCCCCGCGGTTTATNAACATGCGCGTATCTGGACCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGTGCAAACCCTGCCAACAATGCTGCAAAAATCCCAACCACTGACAAAAAGCGAGCAACAGTTTGCGCTGCCAGTTCGAGCTGCCTGATTTCGACACCATACTCACGAACCCGGTCCTGGTACGTGGACTGTGCAGCTAGTGTCGTAACGAGCAGCAGCAGCACGCCAGCGTCTGGCCGTGTTGCGCATTGCCAGTGACAGTATTGNCAAACCGAAGGTGACCATCGATCCGAGCATCGAATTTTGAAACAGATTTCCAAACAGGCAAGACACGTGGCCTGNGAGACACACGCTGATGCGCACGTAACNAAAGCTGATGAGGCGAAGCGGATNGAGACTGNGNGCTTGCTTGTCCCGAACGNACGGTACTGATTNGGNTATAGNGCGAACACATTACAGCTACAAGCAGGGGCTTGCCTGTTGCGCGCAGTTTAACGTACTGGTCCAGCTTGCTCAAACTGCGGTGATAGGACGACCTGTCCGACAACTACNGACC]
[+] EMBL AL694460 [GCAGAATCCCCCGCGGTTTATNAACATGCGCGTATCTGGACCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGTGCAAACCCTGCCAACAATGCTGCAAAAATCCCAACCACTGACAAAAAGCGAGCAACAGTTTGCGCTGCCAGTTCGAGCTGCCTGATTTCGACACCATACTCACGAACCCGGTCCTGGTACGTGGACTGTGCAGCTAGTGTCGTAACGAGCAGCAGCAGCACGCCAGCGTCTGGCCGTGTTGCGCATTGCCAGTGACAGTATTGNCAAACCGAAGGTGACCATCGATCCGAGCATCGAATTTTGAAACAGATTTCCAAACAGGCAAGACACGTGGCCTGNGAGACACACGCTGATGCGCACGTAACNAAAGCTGATGAGGCGAAGCGGATNGAGACTGNGNGCTTGCTTGTCCCGAACGNACGGTACTGATTNGGNTATAGNGCGAACACATTACAGCTACAAGCAGGGGCTTGCCTGTTGCGCGCAGTTTAACGTACTGGTCCAGCTTGCTCAAACTGCGGTGATAGGACGACCTGTCCGACAACTACNGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7366#0 CCGGCGCCAGTAGCTCGCACGGAAATCTGCTCGTTTTCCCTCTGCTTCCAAGTACCTAGT 60
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 GCAACTAATTGTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCT 120
consensus_7366#1 ---------------------------------------------------------GCA 3
**
consensus_7366#0 GATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATC-GGAGCTGACGGAAATTGCC 179
consensus_7366#1 GAATCCCCCGCGGTTTA-------TNAACATGCGCGTATCTGGACCTGACGGAAATTGCC 56
** * ** * ** * ************** *** ***************
consensus_7366#0 CTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAA 239
consensus_7366#1 CTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGG-ACACCTACTGACTCGCTCGAA 115
************************************** *********************
consensus_7366#0 GCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCC-GC 298
consensus_7366#1 GCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGTGCAAACCCTGC 175
************************************************ ******* **
consensus_7366#0 CAACAAG--CGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGC-GCCA 355
consensus_7366#1 CAACAATGCTGCAAAAATCCCAACC-ACTGACAAAAAGCGAGCAACAGTTTGCGCTGCCA 234
****** *************** ** ************************** ****
consensus_7366#0 GTTCGAGCTGCCCGATTTCGACACCATACTCACGAACCCGGTCC-GGTACGTGGACGGC- 413
consensus_7366#1 GTTCGAGCTGCCTGATTTCGACACCATACTCACGAACCCGGTCCTGGTACGTGGACTGTG 294
************ ******************************* *********** *
consensus_7366#0 CAGCTAGTGTCGTT-CGAGCAGCAGCAGCAG--CAGCGTCTGGCCGTGTTGCGCATG--C 468
consensus_7366#1 CAGCTAGTGTCGTAACGAGCAGCAGCAGCACGCCAGCGTCTGGCCGTGTTGCGCATTGCC 354
************* *************** *********************** *
consensus_7366#0 AG-GACAGTATTGCCAAACCGAAGGTGAA-ATCGATCCGAGCATCGAATTT-GAAACAGA 525
consensus_7366#1 AGTGACAGTATTGNCAAACCGAAGGTGACCATCGATCCGAGCATCGAATTTTGAAACAGA 414
** ********** ************** ********************* ********
consensus_7366#0 TTTCCAA-----CAGCAAGCAGGGCCTGG-AGACACA-GCTGATGCGCACGTA--CAAAG 576
consensus_7366#1 TTTCCAAACAGGCAAGACACGTGGCCTGNGAGACACACGCTGATGCGCACGTAACNAAAG 474
******* ** * * ****** ******* *************** ****
consensus_7366#0 C-GATGAG-CGAAGCGGATG-AGACGGAGC---TGCT-GTCCCGAACGAA--GTA-TGAT 626
consensus_7366#1 CTGATGAGGCGAAGCGGATNGAGACTGNGNGCTTGCTTGTCCCGAACGNACGGTACTGAT 534
* ****** ********** **** * * **** ********** * *** ****
consensus_7366#0 TTGGATATAGG-CGAACACAT-ACAGCT-CAAGCAGGGGCTG--CTGTTGCGCG-AGTTT 680
consensus_7366#1 TNGGNTATAGNGCGAACACATTACAGCTACAAGCAGGGGCTTGCCTGTTGCGCGCAGTTT 594
* ** ***** ********* ****** ************ ********** *****
consensus_7366#0 AACGTACTGCTCCAGCT-GCTCAAAC-GCG-TGAT-GGACGACCTGTCCGACAACTACGC 736
consensus_7366#1 AACGTACTGGTCCAGCTTGCTCAAACTGCGGTGATAGGACGACCTGTCCGACAACTACNG 654
********* ******* ******** *** **** **********************
consensus_7366#0 CCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGA 796
consensus_7366#1 ACC--------------------------------------------------------- 657
*
consensus_7366#0 ACGAACGTCTACGAGCGCTTAAAGGAAGAGCAACAACGTAAGCTAATTCGCTCCCGACCA 856
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 TCATCATCTCTTTAATTCCACTAGCGTTTAATAAACAGTTACACACACACACACGCCCTT 916
consensus_7366#1 ------------------------------------------------------------
consensus_7366#0 GACGATAAAAAAAAAAAAA 935
consensus_7366#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||