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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1040 fasta sequence
[CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACAC----TATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTA------CCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGTGTAAAGTGTGCGCAATGATTGAATGTGAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGG-AATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGG-TCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATGGCGAAGCAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATGACCATTGCCGGAGCCTTCCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTACCGCGGTTCATCGACCAGTCTCGAG-------GCAGCAGCAGCAACCCGCTGTCATCACCACAGCCAACGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACTGCATCTCGAATGGCACGCTTGCCGCATCGCAGATAAAA]
[+] EMBL BM622556 [CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACACTATATATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTA CCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGTGTAAAGTGTGCGCAATGATTGAATGTGAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGCAATGCCTACGTTTCCAAGCA ]
[+] EMBL BM622902 [CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACAC TATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTACCCCCCCCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGAGTAAAGTGTGCGCAATGATTGAATGTGAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGA ]
[+] EMBL BX607617 [ CCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGG AATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGG TCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATGGCGAAGCAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATGACCATTGCCGGAGCCTTCCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTACCGCGGTTCATCGACCAGTCTCGAG GCAGCAGCAGCAACCCGCTGTCATCACCACAGCCAACGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACTGCATCTCGAAT ]
[+] EMBL CNS08FOF [ GG AATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGGATCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATGGCGAA CAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATGACCATTGCCGGAGCCTTTCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTACCGCGGTTCATCGACCAGTCTCGAGGGCAGCAGCAGCAGCAGCAGCCCGCTGTCGTCACCACAGCCAACGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACTGCATCTCGAATGGCACGCTTGCCGCATCGCAGATAAAA]
consensusID : consensus_7377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[CCGTGTTCGCGTTTCCTCTTTGCAGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTA]
[+] EMBL BX602667 [CCGTGTTCGCGTTTCCTCTTTGCAGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTA]
consensusID : consensus_7377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[CCGCCCACGCGTCCGGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACACTATATTGCGCTTTGTGCAGTGCAGAAGTGACAGCGTACCTGGAACACAAGTTACCCCCCCCCCTTTCAATCGATGGGGTTTGCTTACTGTAAAGTGTGCGCAATGATTGAATGTGAGCACCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCAATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATCAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTGCGTGACGCCATGGTCGCTCATCCTGGCGATGATCTATCTTGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAA]
[+] EMBL BM622536 [CCGCCCACGCGTCCGGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACACTATATTGCGCTTTGTGCAGTGCAGAAGTGACAGCGTACCTGGAACACAAGTTACCCCCCCCCCTTTCAATCGATGGGGTTTGCTTACTGTAAAGTGTGCGCAATGATTGAATGTGAGCACCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCAATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATCAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTGCGTGACGCCATGGTCGCTCATCCTGGCGATGATCTATCTTGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAA]
consensusID : consensus_7377#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[AGAATCGCCCGAGGCTACCGCGGCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGCAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCT]
[+] EMBL AL934942 [AGAATCGCCCGAGGCTACCGCGGCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGCAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAA 60
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 GCAACACTATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTA 120
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 CCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGTGTAAAGTGTGCGCAATGATTGAATGT 180
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 --CCGTGTTCGCGTTTCCTCTTTGCAGGTGATAGATCATGAAGAGTTTCTCGATCGCATC 58
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 GAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATC 240
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 AAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTG 118
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 AAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTG 300
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 GCCGACTACGCGGCGGACGTGTTTTCCGAAACCC-ACCGCGGCCATTCCCTCAGTCGACT 177
consensus_7377#3 -----------------AGAATCGCCCGAGGCT--ACCGCGGC-ATTCCCTCAGTCGACT 40
consensus_7377#0 GCCGACTACGCGGCGGACGTGTTTTCCGAAACCC-ACCGCGGCCATTCCCTCAGTCGACT 359
consensus_7377#2 -CCGCCCACGCGTCCGGCGTGTTTTTCTTTTCTTCGTCGCAAG-TTTATTACAAGCAACA 58
* * * * *** ** ** * **
consensus_7377#1 GAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCG---CTCATCCTGGCGAT 234
consensus_7377#3 GAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCG---CTCATCCTGGCGAT 97
consensus_7377#0 GAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCG---CTCATCCTGGCGAT 416
consensus_7377#2 CTATATTGCG-CTTTGTGCAGTGCAGAAGTGACAGCGTACCTGGAACACAAGTTACCCCC 117
* ***** ** ** *** ***** * * * * * ** * *
consensus_7377#1 GATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACG----TCGCGTAACGC 290
consensus_7377#3 GATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACG----TCGCGTAACGC 153
consensus_7377#0 GATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACG----TCGCGTAACGC 472
consensus_7377#2 C-CCCCTTTCAATCGATGGGGTTTGCTTACTGTAAAGTGTGCGCAATGATTGAATGTGAG 176
* * ** **** * * * * * ** * * * *
consensus_7377#1 CGTCGGAA--TTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGA 348
consensus_7377#3 CGTCGGAA--TTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGA 211
consensus_7377#0 CGTCGGAA--TTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGA 530
consensus_7377#2 CACCCGAACATCACCGACACCGT-GGTGATAGATCATGAAGAGTTTCTCAATCGC-ATCA 234
* * *** * * * * ** * **** * * *** * * * *
consensus_7377#1 CGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGG--ATCAGATG 406
consensus_7377#3 CGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGG--ATCAGATG 269
consensus_7377#0 CGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGG--ATCAGATG 588
consensus_7377#2 AGAAAACG-CTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATCAGCCGCCCGCTG 293
*** ** ** * * ** * ** *** ** * * * * * **
consensus_7377#1 AAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGA---ATGCCTACGTTT--CCA 461
consensus_7377#3 AAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGA---ATGCCTACGTTT--CCA 324
consensus_7377#0 AAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGA---ATGCCTACGTTT--CCA 643
consensus_7377#2 GCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTG 353
* * * *** * ** ** ** * * ** ** * * *
consensus_7377#1 AGCACGATTTCTTCGAG-AAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGC 520
consensus_7377#3 AGCACGATTTCTTCGAGCAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGC 384
consensus_7377#0 AGCACGATTTCTTCGAG-AAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGC 702
consensus_7377#2 AACTTTGCGACTGTGGGCAACCTGTGCGTGACGCCATGGTCGCT--CATCCTGGCGATGA 411
* * ** * * ** *** * * * * *** * *** *
consensus_7377#1 CTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTA--------------- 565
consensus_7377#3 CTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCT-------- 436
consensus_7377#0 CTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATG 762
consensus_7377#2 TCTAT-CTTGATCGGTTGAACGCCACCGATCCGACC---TTTGTACGTCGCGTAA----- 462
* * * ** * * ****** * * * *** **
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 GCGAAGCAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATG 822
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 ACCATTGCCGGAGCCTTCCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTAC 882
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 CGCGGTTCATCGACCAGTCTCGAGGCAGCAGCAGCAACCCGCTGTCATCACCACAGCCAA 942
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 ------------------------------------------------------------
consensus_7377#3 ------------------------------------------------------------
consensus_7377#0 CGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACT 1002
consensus_7377#2 ------------------------------------------------------------
consensus_7377#1 --------------------------------------
consensus_7377#3 --------------------------------------
consensus_7377#0 GCATCTCGAATGGCACGCTTGCCGCATCGCAGATAAAA 1040
consensus_7377#2 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||