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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 891 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTGCGAATGAGTCATGAACCCTTATCTCAATCACCTGATTTGCAGTGCAAATGTAACGACCGGTTTCATAATTTCCAATAGCGCTAGGCTCGCCGCAAGTATCAACATTGCAATAGTGGGGTTGTTGTACCTTATCGTTTTGTGTCTGCGCATGTATAAGTTTAAGCCGGAACCGGTACGACGGAACAGAGTCCAACGTATCTGCTACCGTTCTGGCTGCCTCCAGTTTCAGTGTGTGCTTACAAGTGAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTAT-GGTGGTGATGATGGTGGGTAAAT--GGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGT-GGTGAGTTGACAGCTCCGTTCAAAGAACAATCGTAGCCGGCGAGCGCGGCGAACAGCAGAGACCGGCAAGCGTTCAGAACCCATTTCTCAGTATTTTGTCACCAAAGTGTGGCCGTCTTTTCAGTCCCGTGATCGTTCGTTGCTCTGCTTAGACGTGAAAAG]
[+] EMBL BM575303 [CCGCGGACGCGTGGGCGGACGCGTGGGTGCGAATGAGTCATGAACCCTTATCTCAATCACCTGATTTGCAGTGCAAATGTAACGACCGGTTTCATAATTTCCAATAGCGCTAGGCTCGCCGCAAGTATCAACATTGCAATAGTGGGGTTGTTGTACCTTATCGTTTTGTGTCTGCGCATGTATAAGTTTAAGCCGGAACCGGTACGACGGAACAGAGTCCAACGTATCTGCTACCGTTCTGGCTGCCTCCAGTTTCAGTGTGTGCTTACAAGCGTATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACAGCTCGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGCTTCCACTGCCGCAGGGAGGGCCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTG ]
[+] EMBL BX604649 [ AAGTTTAAGCCGGAACCGGTACGACGGAATAGAGTCTAACGTTTCTGCTACCGTTCTGGCTGCCTCCAGTTTCAGTGTGTACTTACAAGTGAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTAT GGTGGTGATGATGGTGGGTAAAT GGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGT GGTGAGTTGACAGCTCCGTTCAAAGAACAATCGTAGCCGGCGAGCGCGGCGAACAGCAGAGAC ]
[+] EMBL BM592175 [ ccGCTTACAAGTGAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTATGGGTGGTGATGATGGTGGGTAAATGGGGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGTGGGTGAGTTGACAGCTCCGTTCAAAGAACAATCGTAGCCGGCGAGCGCGGCGAACAGCAGAGACCGGCAAGCGTTCAGAACCCATTTCTCAGTATTTTGTCACCAAAGTGTGGCCGTCTTTTCAGTCCCGTGATCGTTCGTTGCTCTGCTTAGACGTGAAAAG]
[+] EMBL CNS09LRC [ TGAATAGTCGATGCACGATGGGTAA CTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAG GGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTA GGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGATAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCA GGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTAT GGTGGTGATGATGGTGGGTAAAT GGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGT ]
[+] EMBL BX623057 [ ATTCGGTCGATCGTTGCCNATACGCNAAACGATTGTGTTTCCACTGCCGTANGGAGGGTCACATCNTTCGGATGTGCCCGGNTCGGTTGAGACAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAAATTAAACAATGCACTTAT GGTGGTGATGATGGTGGGTAAAT GGTGTGGCAGGGACCTGTTGAGTGAAAAGAGCATGNTGTGTGTGTGTGTGTGGT GGTGAGTTGACAGCTCCGNTCAAANAACAATCGTAGCCG ]
consensusID : consensus_7378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GAATCGCCCGAGTTTAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGGAGGCTGTACTAGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGCTAGCGGAGGGTCACATCGCTTCGGATGTGCCCGGCTTCGGTTGANGAGAAAATCAACACAAACAGCAACACTAGGCGCACCTTAACACGCGTCTTGGCAATTGTTTCGACTCTAACTATAAACACATTTTGCGANNCCCCTACCCGGCAGGGCATGTCGGTCTGTATCTCGATATTCGGAACGTGTACGTGAATGTAATACAATGCACTTTATGGTGGTGATGATAGGTGGGTAAATAGGTGTGGCAGGGACCTGTTGAGTGAGAAAGCGCCATGGTGTGTGTGTGTGTGTGGTGGTGAGTNTGACAGGCGTCCGCCNCGAAAGGAACAAATACGTAACGGCGCANGCGCGGGGAAGCGAGCAAGAGAGNCGGNAAGCGG]
[+] EMBL AL934912 [GAATCGCCCGAGTTTAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGGAGGCTGTACTAGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGCTAGCGGAGGGTCACATCGCTTCGGATGTGCCCGGCTTCGGTTGANGAGAAAATCAACACAAACAGCAACACTAGGCGCACCTTAACACGCGTCTTGGCAATTGTTTCGACTCTAACTATAAACACATTTTGCGANNCCCCTACCCGGCAGGGCATGTCGGTCTGTATCTCGATATTCGGAACGTGTACGTGAATGTAATACAATGCACTTTATGGTGGTGATGATAGGTGGGTAAATAGGTGTGGCAGGGACCTGTTGAGTGAGAAAGCGCCATGGTGTGTGTGTGTGTGTGGTGGTGAGTNTGACAGGCGTCCGCCNCGAAAGGAACAAATACGTAACGGCGCANGCGCGGGGAAGCGAGCAAGAGAGNCGGNAAGCGG]
consensusID : consensus_7378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[TCGCCNCGAGGNGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGTGAGGCTGTACTGCGTGTGGCGAAGCTGTGACCATTCGGTCGATCTGTTGCCTGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGAACCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAAAGTAAACAATGCACTTATGGTGGTGATGATGGTGGGTAAATGGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGTGGTGAGTTGACAGCT]
[+] EMBL AL931152 [TCGCCNCGAGGNGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGTGAGGCTGTACTGCGTGTGGCGAAGCTGTGACCATTCGGTCGATCTGTTGCCTGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGAACCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAAAGTAAACAATGCACTTATGGTGGTGATGATGGTGGGTAAATGGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGTGGTGAGTTGACAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7378#0 CCGCGGACGCGTGGGCGGACGCGTGGGTGCGAATGAGTCATGAACCCTTATCTCAATCAC 60
consensus_7378#2 ------------------------------------------------------------
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 CTGATTTGCAGTGCAAATGTAACGACCGGTTTCATAATTTCCAATAGCGCTAGGCTCGCC 120
consensus_7378#2 ------------------------------------------------------------
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 GCAAGTATCAACATTGCAATAGTGGGGTTGTTGTACCTTATCGTTTTGTGTCTGCGCATG 180
consensus_7378#2 ------------------------------------------------------------
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 TATAAGTTTAAGCCGGAACCGGTACGACGGAACAGAGTCCAACGTATCTGCTACCGTTCT 240
consensus_7378#2 ------------------------------------------------------------
consensus_7378#1 ------------------------------------------------------------
consensus_7378#0 GGCTGCCTCCAGTTTCAGTGTGTGCTTACAAGTGAATAGTCGATGCACGATGGGTAACCT 300
consensus_7378#2 -----------------------------TCGCCNCGAGGNGATGCACGATGGGTAACCT 31
consensus_7378#1 -------------------GAATCGCCCGAGTTTAATAGTCGATGCACGATGGGTAACCT 41
** *******************
consensus_7378#0 TTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGC 360
consensus_7378#2 TTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGC 91
consensus_7378#1 TTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGC 101
************************************************************
consensus_7378#0 GCTCTACCGCACCCAGGG-AGGCTGTACT-GCGTGTGGCGAAGCGG--ACCATTCGGTCG 416
consensus_7378#2 GCTCTACCGCACCCAGTG-AGGCTGTACT-GCGTGTGGCGAAGCTGTGACCATTCGGTCG 149
consensus_7378#1 GCTCTACCGCACCCAGGGGAGGCTGTACTAGCGTGTGGCGAAGCGG--ACCATTCGGTCG 159
**************** * ********** ************** * ************
consensus_7378#0 ATC-GTTGCC-GATACGCGAAACGATTGTGTTTCCACTGCCG-TAG-GGAGGGTCACATC 472
consensus_7378#2 ATCTGTTGCCTGATACGCGAAACGATTGTGTTTCCACTGCCG-TAG-GGAGGGTCACATC 207
consensus_7378#1 ATC-GTTGCC-GATACGCGAAACGATTGTGTTTCCACTGCCGCTAGCGGAGGGTCACATC 217
*** ****** ******************************* *** *************
consensus_7378#0 G-TTCGGATGTGCCCGG-TTCGGTTGAG-AGAAAATCAACACAAA-AGCAACACTAGGCG 528
consensus_7378#2 G-TTCGGATGTGCCCGG-TTCGGTTGAG-AGAAAATCAACACAAA-AGCAACACTAGGCG 263
consensus_7378#1 GCTTCGGATGTGCCCGGCTTCGGTTGANGAGAAAATCAACACAAACAGCAACACTAGGCG 277
* *************** ********* **************** **************
consensus_7378#0 CAATTAAA---GCGTCTTGGCAATTGTTTCGATT---AATATAAACACATTTTGCGACCC 582
consensus_7378#2 CAATTAAA---GCGTCTTGGCAATTGTTTCGATT---AATATAAACACATTTTGCGAACC 317
consensus_7378#1 CACCTTAACACGCGTCTTGGCAATTGTTTCGACTCTAACTATAAACACATTTTGCGANNC 337
** * ** ********************* * * ****************** *
consensus_7378#0 CC-TACCCGGCAGGG-ATG-CGGTCTGTATCTCGAT-TTCGGAACGTGTACGTGAATGTA 638
consensus_7378#2 CC-TACCCGGCAGGG-ATG-CGGTCTGTATCTCGAT-TTCGGAACGTGTACGTGAAAGTA 373
consensus_7378#1 CCCTACCCGGCAGGGCATGTCGGTCTGTATCTCGATATTCGGAACGTGTACGTGAATGTA 397
** ************ *** **************** ******************* ***
consensus_7378#0 A-ACAATGCACTT-ATGGTGGTGATGAT-GGTGGGTAAAT-GGTGTGGCAGGGACCTGTT 694
consensus_7378#2 A-ACAATGCACTT-ATGGTGGTGATGAT-GGTGGGTAAAT-GGTGTGGCAGGGACCTGTT 429
consensus_7378#1 ATACAATGCACTTTATGGTGGTGATGATAGGTGGGTAAATAGGTGTGGCAGGGACCTGTT 457
* *********** ************** *********** *******************
consensus_7378#0 GAGTGA-AAAGCGC-ATGGTGTGTGTGTGTGTGTGGTGGTGAGTT-GACAG-----CTCC 746
consensus_7378#2 GAGTGA-AAAGCGC-ATGGTGTGTGTGTGTGTGTGGTGGTGAGTT-GACAG-----CT-- 479
consensus_7378#1 GAGTGAGAAAGCGCCATGGTGTGTGTGTGTGTGTGGTGGTGAGTNTGACAGGCGTCCGCC 517
****** ******* ***************************** ***** *
consensus_7378#0 GTTCAAAGAACAAT--CGTAGCCG-GCGAGCGCGGCGAAC--AGCA-GAGA-CCGGCAAG 799
consensus_7378#2 ------------------------------------------------------------
consensus_7378#1 NCGAAAGGAACAAATACGTAACGGCGCANGCGCGGGGAAGCGAGCAAGAGAGNCGGNAAG 577
consensus_7378#0 CGTTCAGAACCCATTTCTCAGTATTTTGTCACCAAAGTGTGGCCGTCTTTTCAGTCCCGT 859
consensus_7378#2 ------------------------------------------------------------
consensus_7378#1 CGG--------------------------------------------------------- 580
consensus_7378#0 GATCGTTCGTTGCTCTGCTTAGACGTGAAAAG 891
consensus_7378#2 --------------------------------
consensus_7378#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||