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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1492 fasta sequence
[CCGGGCCGCCCTGCAGCAGGAGCACGTGGAGGCTCTAGCATTGTGTTGGGTGAGTCCACCATTGATAGTAGCTCTTCCAAGCGACAGCAGACAAGCACCACCACCAAGCTGATTGGAGGAAAGCTCGTCCACGTGACAAACGCCAGCGATAGCAATAACAACAGTTCCG--GGCA-AAGCGTC--CCCAGAACGCATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGT-CTCCCAGACCGCGT-CTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCACCACCCGCAACACGAGCACGA-TCGGACAGCAGTCC-TCCAC-GTCACAGCAGC-AGCAGCAGCAGCA-GTACAAT-CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAA-CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA-CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCAT-GAGCGTATCCGGC-TCGAT-CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG-CT-C-GC-TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA-CCAACC-GGACGGTGCGTGGCCAACCGTGTCCA-CCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCG-GCGAATCAGAAATC-GCTGCGAGACTACCACTCCGCCATGAAC-GTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTC-GTTC-GGGGAC-GACAAGTTCCAC-GGTACCAGCTCGTACAA-GGTGCAGTACATCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACATGACAACATGAAGCTGTCGAAGGTCACCAAACAGCACACGTACTATGTGC-GGGACA-AGAAGTGCTAGGCGGAGCATCGTTAGAGTTGCAGTGGCATAAATGTTTTGGATTATTTGTTTATTCTAATAATATTGTATCTGTTCTCCAATGCTTCTACATATCGTTTTGGNTGTGATCCAGTGTNACAGTCTGATACACACATGCGTNNAAGCACTTTCAGTGAACATATATACATCGACTCATTATTACANCGAANCGCGTGGAAGGAGCGTTGGTCACGTGCGCANCTCTTCAGAGGAAGACGTAAATCACGGGTCGCANACGGCATAATTAACGGGCTATACCCCATATAATANTACCCTAAGCATCAACTATTTACTACAAAAAANTGGGTCAGTTCATACGCTTAATTGGCTNTNGTCTGTACNTNTACNANAAACGCGAACAACAGTAACTANANAAGACAAAAGAGCANACACAACAGAGGGCNTTTTTGCCGGNNGNGAAGCATTATTCCNTNCGGGCGGGGTNACTCTACTATGGGATGCCCGNCTGANC]
[+] EMBL BM575504 [CCGGGCCGCCCTGCAGCAGGAGCACGTGGAGGCTCTAGCATTGTGTTGGGTGAGTCCACCATTGATAGTAGCTCTTCCAAGCGACAGCAGACAAGCACCACCACCAAGCTGATTGGAGGAAAGCTCGTCCACGTGACAAACGCCAGCGATAGCAATAACAACAGTTCCGCCGGCA AAGCGTCTGCCCAGAACGCATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGTCCTCCCAGACCGCGTCCTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCACCACCCGCAACACGAGCACGA TCGGACAGCAGTCC TCCAC GTCACAGCAGC AGCAGCAGCAGCA GTACAAT CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAA CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCATGGAGCGTATCCGGC TCGAT CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG CT C GC TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCCAACCGGGACGGTGCGTGGCCAACCGTGTCCACCCACCGACGCTtgg ]
[+] EMBL BX466598 [ GGCAGAATCGCC ACGAGGNNANATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGT CTCCCAGACCGCGT CTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCACCACCCGCAACACGAGCACGAGTCGGACAGCAGTCCGTCCACGGTCACAGCAGCGAGCAGCAGCAGCAGGTACAAT CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAAGCTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGGCACCACAAGCGCAGCACGCCG CAATGGGGTGGCCGGTGGCAT GAGCGTATCCGGCGTCGATACCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGNACCAGCTACAGACTACGGCGTGCACCGCCGCGGCAAGGAAT ]
[+] EMBL BX615018 [ AC GTCACAGCAGC AGCAGCAGCAGCA GTACAAT CGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAA CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCAT GAGCGTATCCGGC TCGAT CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG CT C GC TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA CCAACC GGACGGTGCGTGGCCAACCGTGTCCA CCACCGACGCTGGCCGGTACCGGGCTGTCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGCATGTCGGCG GCGAATCAGAAATC GCTGCGCGACTACCACTCCGCCATGAAC GTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAGCATCTC GTTC GGGGAC GACAAGTTCCAC GGCACCAGCTCGTACAA GGTGCAGTACATCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACATGACAACATGAAGCTGTCGAAGGTCACCAAACAGCACACGTACTATGTGC GGGACA AGAAGT ]
[+] EMBL AL930450 [ aagattc ccACGATNCGGAAGAACA CTTCGCGTCGTCAGAGAACGTGAACAA CTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAA CGCAGCACGCCGCCAATGGGGTGGCCGGTGGCAT GAGCGTATCCGGC TCGAT CCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAG CT C GC TGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA CCAACC GGACGGTGCGTGGCCAACCGTGTCCA CCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCG GCGAATCAGAAATC GCTGCGAGACTACCACTCCGCCATGAAC GTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTCGGTTC GGGGAC GACAAGTTCCACGGGTACCAGCT ]
[+] EMBL AL930443 [ CAA GAATCCCCCGAGGTTAAAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCA CCAACC GGACGGTGCGTNGCCAACCGTGTCCA CCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGTGCGAATCAGAAATCTGCTGCGAGACTACCACTCCGCCATGAACTGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTC GTTCTGGGGACTGACAAGTTCCAC GGTACCAGCTCGTACAANTGTGCAGTACATCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACACGACAACATGAAGCTGTCGAAGGTCACCAAACAGCACACGTACTATGTGCTGGGACACATNA AGCTAGGCGGAGCATCGTTAGAGTTGCAGTGGCATAAATGTTTTGGATTATTTGTTTATTCTAATAATATTGTATCTGTTCTCCAATGCTTCTACATATCGTTTTGGNTGTGATCCAGTGTNACAGTCTGATACACACATGCGTNNAAGCACTTTCAGTGAACATATATACATCGACTCATTATTACANCGAANCGCGTGGAAGGAGCGTTGGTCACGTGCGCANCTCTTCAGAGGAAGACGTAAATCACGGGTCGCANACGGCATAATTAACGGGCTATACCCCATATAATANTACCCTAAGCATCAACTATTTACTACAAAAAANTGGGTCAGTTCATACGCTTAATTGGCTNTNGTCTGTACNTNTACNANAAACGCGAACAACAGTAACTANANAAGACAAAAGAGCANACACAACAGAGGGCNTTTTTGCCGGNNGNGAAGCATTATTCCNTNCGGGCGGGGTNACTCTACTATGGGATGCCCGNCTGANC]
consensusID : consensus_7387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAGTGAATCAAGCACCACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGCTGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTCGTTCGGGGACAACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACATCCACCAGCACGAAGGGCGCTGCCCGGCTCGC]
[+] EMBL BM589389 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGTGAATCAAGCACCACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGCTGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGTCCAACATCTCGTTCGGGGACAACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACATCCACCAGCACGAAGGGCGCTGCCCGGCTCGC]
consensusID : consensus_7387#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[AATTGCCCCGAGGNTTACACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGGCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGC]
[+] EMBL AL693437 [AATTGCCCCGAGGNTTACACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGCAGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCTGCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGGCGGTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCGCCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAATCGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACCGGACGGTGCGTGGCCAACCGTGTCACCACCGACGCTGGCCGGTACGGGTCTATCGAACAGCAGTAGCACCGTGACCGCGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 CCGGGCCGCCCTGCAGCAGGAGCACGTGGAGGCTCTAGCATTGTGTTGGGTGAGTCCACC 60
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 ATTGATAGTAGCTCTTCCAAGCGACAGCAGACAAGCACCACCACCAAGCTGATTGGAGGA 120
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 AAGCTCGTCCACGTGACAAACGCCAGCGATAGCAATAACAACAGTTCCGGGCAAAGCGTC 180
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 CCCAGAACGCATCGAATGCTCACCACTCTTCGCTGCAGGAGCAGCTGTCTCCCAGACCGC 240
consensus_7387#1 ----------------CCGCCCACGCG-TCCGCCCACGCGTCCGGAGTGAATCAAGCAC- 42
consensus_7387#2 --------------------------------------------AATTGCCCCGAGGNTT 16
consensus_7387#0 GTCTCCACATCCACAGCCTCGAACGTGATGAAGTCGAGCCGAACGAGTGAATCAAGCAC- 299
* ** * **
consensus_7387#1 -CACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGC 101
consensus_7387#2 ACACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGC 76
consensus_7387#0 -CACCCGCAACACGAGCACGATCGGACAGCAGTCCTCCACGTCACAGCAGCAGCAGCAGC 358
***********************************************************
consensus_7387#1 AGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCT 161
consensus_7387#2 AGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCT 136
consensus_7387#0 AGCAGTACAATCGGAAGAACACCTTCGCGTCGTCAGAGAACGTGAACAACTCGATCCTCT 418
************************************************************
consensus_7387#1 GCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCG 221
consensus_7387#2 GCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGGCG 196
consensus_7387#0 GCCGACCGGCGCAAACGTCCACCGCCACCACAACGCAGCACGCCGCCAATGGGGTGGCCG 478
********************************************************* **
consensus_7387#1 GTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCG 281
consensus_7387#2 GTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCG 256
consensus_7387#0 GTGGCATGAGCGTATCCGGCTCGATCCAGCGCAAGAGCATCTCGAACCTGAACGACAGCG 538
************************************************************
consensus_7387#1 CCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAAT 341
consensus_7387#2 CCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAAT 316
consensus_7387#0 CCATGTACTCGACGACGAACCGCACCAGCTACAGCTCGCTGCACCGCCGCGGCAAGGAAT 598
************************************************************
consensus_7387#1 CGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACC 401
consensus_7387#2 CGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACC 376
consensus_7387#0 CGGCCGAATCGAGAATGCAGGACTACGTGAAGACGCTCGAAACGGGAACCATCACCAACC 658
************************************************************
consensus_7387#1 GGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACA 461
consensus_7387#2 GGACGGTGCGTGGCCAACCGTGTC-ACCACCGACGCTGGCCGGTACGGGTCTATCGAACA 435
consensus_7387#0 GGACGGTGCGTGGCCAACCGTGTCCACCACCGACGCTGGCCGGTACGGGTCTATCGAACA 718
************************ ***********************************
consensus_7387#1 GCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGC 521
consensus_7387#2 GCAGTAGCACCGTGACCGCGAGC------------------------------------- 458
consensus_7387#0 GCAGTAGCACCGTGACCGCGAGCTCCTCCACCAGTATGTCGGCGGCGAATCAGAAATCGC 778
***********************
consensus_7387#1 TGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGT 581
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 TGCGAGACTACCACTCCGCCATGAACGTCACGCGCAGCTCGTCGACCAAAGCGAACGCGT 838
consensus_7387#1 CCAACATCTCGTTCGGGGACAACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACA 641
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 CCAACATCTCGTTCGGGGACGACAAGTTCCACGGTACCAGCTCGTACAAGGTGCAGTACA 898
consensus_7387#1 TCCACCAGCACGAAGGGCGCTGCCCGGCTCGC---------------------------- 673
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 TCCAGCAGCACGAAGGGCGCTGCCCGGCCGCCGCACATGACAACATGAAGCTGTCGAAGG 958
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 TCACCAAACAGCACACGTACTATGTGCGGGACAAGAAGTGCTAGGCGGAGCATCGTTAGA 1018
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 GTTGCAGTGGCATAAATGTTTTGGATTATTTGTTTATTCTAATAATATTGTATCTGTTCT 1078
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 CCAATGCTTCTACATATCGTTTTGGNTGTGATCCAGTGTNACAGTCTGATACACACATGC 1138
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 GTNNAAGCACTTTCAGTGAACATATATACATCGACTCATTATTACANCGAANCGCGTGGA 1198
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 AGGAGCGTTGGTCACGTGCGCANCTCTTCAGAGGAAGACGTAAATCACGGGTCGCANACG 1258
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 GCATAATTAACGGGCTATACCCCATATAATANTACCCTAAGCATCAACTATTTACTACAA 1318
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 AAAANTGGGTCAGTTCATACGCTTAATTGGCTNTNGTCTGTACNTNTACNANAAACGCGA 1378
consensus_7387#1 ------------------------------------------------------------
consensus_7387#2 ------------------------------------------------------------
consensus_7387#0 ACAACAGTAACTANANAAGACAAAAGAGCANACACAACAGAGGGCNTTTTTGCCGGNNGN 1438
consensus_7387#1 ------------------------------------------------------
consensus_7387#2 ------------------------------------------------------
consensus_7387#0 GAAGCATTATTCCNTNCGGGCGGGGTNACTCTACTATGGGATGCCCGNCTGANC 1492
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||