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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 880 fasta sequence
[AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA--CAAAAAAAGCTGCAAGCT-CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT-GCGGTACCTGCCGT-CA-GA-CACTGGCGGAATTCA-GCGCCAAAGATATCCC-CATCTATCTAGTCAA-GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTG-CCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG]
[+] EMBL BX466553 [AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA CAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGG CTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGGCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGGCGGTACCTGCCGTGCAGGAGCACTGGCGGAATTCAGGCGCCAAAGATATCCCGCATCTATCTAGTCAANGCCTGNGCCAGTAAGGGTCATGATAACGTCngc ]
[+] EMBL BX605233 [ TTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAA GAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAGCACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTG CCCCCCTTCCCACGTTATCTGCA ]
[+] EMBL BX627018 [ ACTGTTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAAAAACCAAAAAAAGCTGCAAGCT CTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGAGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGNTCAAAC ]
[+] EMBL CNS08LQG [ TGCAA CTGCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCCCAGCGCACACGCACCAGCACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCCGTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCCCGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGCCCCCT GCGGTACCTGCCGT CA GA CACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTATCTAGTCAA GCCTGCGCCGGTAAGGGAAAAAATAACGTCGCTGTTCAAACTGCTGCCACACGCCTTTTCGCCCACCTTCCTGAACACCAcg ]
[-] EMBL CNS08LQH [ TTCAGGTGCGCAAAAATGCCTACTGCCCGGACAGCAAATTTCCCGTCGGGGCGGC CAACGCACCACAACGGGCGAGATCTTTTTTTGCTGCAACGTGGAAAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCGATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGTTGTGGCGGCTTTTCAGGAGAATGAATTTACGG CCCCT GCGGTCCCTGCCGT CA GA AACTGGCGGAATTCA GCGCCAAAGATATCCC CATCTGCCTAGTCAA GCCTGCGCCGGTAAGGGTCATGATAACGTCGCTGTTCAAACTGCTGCTACACGCCTTTTCGCCCACCTTCCTGAACAACAAGTAAAGAAAAGAGAAGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGACGTTGTTGTGCCCCCCCTTCCCACGTTTTCTGCACCATCAGGAAGCTATCTTATCCGATCCCGACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG]
consensusID : consensus_7390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence
[ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGT-GAGGT-GGTT-GTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCG-TTTTAATTTCGGTCTCGGCCCAGCGCACAC-GCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATA-GTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGC-GCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGC-GGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCTGAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA]
[+] EMBL BX469628 [ATCGGCACGAGGGTTCTAATTTTGTCCCGCCCTACCCCACAGACGGCAGTGGATGT GAGGT GGTT GTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCG TTTTAATTTCGGTCTCGGCCCAGCGCACAC GCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATA GTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGC GCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGC GGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAACGTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCGATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAATTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATCCCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTCAAACTGCTGCACACGGCNTTTTGCGGCCACCTTCTGAACAACAAGTAAGAANAGAGAGGAAACGTNTGGGGGCGCAACCCGGGGACGCAA]
[+] EMBL AL693447 [ TGTAGGGGTGGGTTGGTGAGCAAAAAAGGAAAAAAAACAAAAAAAGCTGC AGCTCTAGGCCCCAGCTGTCCTCGATTTTAATTTCGGTCTCGGCCCAGCGCACACTGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAACAACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATATGTTCCGTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCTGCAACAATGCCTACTGCCCGTACAGCAACTTTCCCGTCGGGGCTGGCGCTACGCACCACCAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7390#0 AGATCNCCACGAGGTGNACATTTAAACGTTCGGCGGTTTGTTTACTGTTTCTAATTTTGT 60
consensus_7390#1 -----------------------------------ATCGGCACGAGGGTTCTAATTTTGT 25
* * * ************
consensus_7390#0 CCCGCCCTACCCCACAGACGGCAGTGGGTGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA 120
consensus_7390#1 CCCGCCCTACCCCACAGACGGCAGTGGATGTGAGGTGGTTGTGAGCAAAAAAGGAAAAAA 85
*************************** ********************************
consensus_7390#0 AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC 180
consensus_7390#1 AACAAAAAAAGCTGCAAGCTCTAGGCCCCAGCTGTCCTCGTTTTAATTTCGGTCTCGGCC 145
************************************************************
consensus_7390#0 CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC 240
consensus_7390#1 CAGCGCACACGCACCAACACGCCAAACGGGAGAGGAGAGTTATTTTTCGCGATGAACAAC 205
************************************************************
consensus_7390#0 AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC 300
consensus_7390#1 AACATTAACGGAACGGTGGACGGACAAACGGTGGTCGAATATTCTACCGTAGATAGTTCC 265
************************************************************
consensus_7390#0 GTGAAGGAGCTGATCGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC 360
consensus_7390#1 GTGAAGGAGCTGATTGAGGCGGCTATTCAGGTGCGCAACAATGCCTACTGCCCGTACAGC 325
************** *********************************************
consensus_7390#0 AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACGGGCGAGATCGTGACCGGCTGCAAC 420
consensus_7390#1 AACTTTCCCGTCGGGGCGGCGCTACGCACCACCACAGGCGAGATCGTGACCGGCTGCAAC 385
*********************************** ************************
consensus_7390#0 GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGAACGGCCGTTTGCAAAGCG 480
consensus_7390#1 GTGGAGAATGGCACGTTCGGGCCGTCCGTGTGCGCCGAGCGGACGGCCGTTTGTAAAGCG 445
***************************************** *********** ******
consensus_7390#0 ATTAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA 540
consensus_7390#1 ATCAGCGAAGGACATCGGGAGTTTACCGCCGTCGCTGTGGCGGCTTATCAGGAGAATGAA 505
** *********************************************************
consensus_7390#0 TTTACGGCCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC 600
consensus_7390#1 TTTACGGGCCCCTGCGGTACCTGCCGTCAGACACTGGCGGAATTCAGCGCCAAAGATATC 565
******* ****************************************************
consensus_7390#0 CCCATCT--ATCTAGTCAAGCCTGCGCCGGTAAGGGTCA-TGATAACGTCGCTGT---TC 654
consensus_7390#1 CCCATCGTANTCTAGTCAAGCCTGCGCCAGTCAGGGTCAGTGATAACGTCGGCGTGTTTC 625
****** ****************** ** ******* *********** ** **
consensus_7390#0 AAACTGCTGCCACACGCCTTTTCGC--CCACCTTCCTGAACAACAAGTAAAGAAAAGAGA 712
consensus_7390#1 AAACTGCTGC-ACACGGCNTTTTGCGGCCACCTTC-TGAACAACAAGTAA-GAANAGAGA 682
********** ***** * *** ** ******** ************** *** *****
consensus_7390#0 AGAAAACGTTTGGGGGCGCAACCCGGGGACGCACAAAACTTGTAACTTAAACTTAACGAC 772
consensus_7390#1 GGAAA-CGTNTGGGGGCGCAACCCGGGGACGCAA-------------------------- 715
**** *** ***********************
consensus_7390#0 GTTGTTGTGCCCCCCTTCCCACGTTATCTGCACCATCAGGAAGCTATCTTATCCGATCCC 832
consensus_7390#1 ------------------------------------------------------------
consensus_7390#0 GACCTCCACCCACCGCCTATTTTTTTCGCGTATAAAAATACACACATG 880
consensus_7390#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||