cluster # 74

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Anopheles gambiae
cluster # 74 cluster # 74 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_74#0 length = 672 sequences # 1

consensus_74#1 length = 373 sequences # 1

consensusID : consensus_74#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CCGCAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGACAGCATGGTAAAAAGTGAAGAAAATAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTTTGAAAGCAAATGGAATTGGGAATCCGAGTCCGTGTACGTGTACGACCGGTCGAAATTGCTGACTGCGCCCGACGTACGCCGCCTGTGCTGCAGCGATCCCACCAACGAAATCACACCCGGGTGACAAGAGGAGGTAGAGCGAAAGTAGCAAGTACGTCACATCGTGACGACACAACCAACGCCGCCAACACCACCGCCACCACCACCACCACCACAATCAACGACAGAATCAGCAGGAAGTAACGTCGCACCGGGACCGGCCCCAACATGGCGCTTCTGCGCTCGATAATCGATCTGATGGATCTGATTGGATGCGATCTGGGAGGACTGATCGAGATAATACGCTTCATTTGGCGCTGCATCGTGGAGACCCTCGTCAGCGTCCAGCTGCAGCGCTTGCTGGGCGATGGCACGGGACGAGGGGGAGGCAATGGATCGAACCGCGCCGAAATGTGTCTGCTGTGAATGCAATCTAGTGGGCCAACAAACCAGAGGAGCCACTTTAAACGTCTTCCGCACAAGAAAGTTTAGTGAATAGTTTAAATGGTATCAC]

[+] EMBL BM629387             [CCGCAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGACAGCATGGTAAAAAGTGAAGAAAATAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTTTGAAAGCAAATGGAATTGGGAATCCGAGTCCGTGTACGTGTACGACCGGTCGAAATTGCTGACTGCGCCCGACGTACGCCGCCTGTGCTGCAGCGATCCCACCAACGAAATCACACCCGGGTGACAAGAGGAGGTAGAGCGAAAGTAGCAAGTACGTCACATCGTGACGACACAACCAACGCCGCCAACACCACCGCCACCACCACCACCACCACAATCAACGACAGAATCAGCAGGAAGTAACGTCGCACCGGGACCGGCCCCAACATGGCGCTTCTGCGCTCGATAATCGATCTGATGGATCTGATTGGATGCGATCTGGGAGGACTGATCGAGATAATACGCTTCATTTGGCGCTGCATCGTGGAGACCCTCGTCAGCGTCCAGCTGCAGCGCTTGCTGGGCGATGGCACGGGACGAGGGGGAGGCAATGGATCGAACCGCGCCGAAATGTGTCTGCTGTGAATGCAATCTAGTGGGCCAACAAACCAGAGGAGCCACTTTAAACGTCTTCCGCACAAGAAAGTTTAGTGAATAGTTTAAATGGTATCAC]




>consensus_74#0
CCGCAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGACAGC
ATGGTAAAAAGTGAAGAAAATAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTTT
GAAAGCAAATGGAATTGGGAATCCGAGTCCGTGTACGTGTACGACCGGTCGAAATTGCTG
ACTGCGCCCGACGTACGCCGCCTGTGCTGCAGCGATCCCACCAACGAAATCACACCCGGG
TGACAAGAGGAGGTAGAGCGAAAGTAGCAAGTACGTCACATCGTGACGACACAACCAACG
CCGCCAACACCACCGCCACCACCACCACCACCACAATCAACGACAGAATCAGCAGGAAGT
AACGTCGCACCGGGACCGGCCCCAACATGGCGCTTCTGCGCTCGATAATCGATCTGATGG
ATCTGATTGGATGCGATCTGGGAGGACTGATCGAGATAATACGCTTCATTTGGCGCTGCA
TCGTGGAGACCCTCGTCAGCGTCCAGCTGCAGCGCTTGCTGGGCGATGGCACGGGACGAG
GGGGAGGCAATGGATCGAACCGCGCCGAAATGTGTCTGCTGTGAATGCAATCTAGTGGGC
CAACAAACCAGAGGAGCCACTTTAAACGTCTTCCGCACAAGAAAGTTTAGTGAATAGTTT
AAATGGTATCAC

consensusID : consensus_74#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [CCGGTCGGATCATGGAACAGGAGGTAAGCATCGTGACGTGCCATCAGTGAAACGTGTTCATTCCTGCACCAATCGCTAGTGCCGCGAGTGGGAGTGGGGGGGGGGGGGGTGAAACGAATCTCAACAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGGCAGCATGGTCAAAAGTGAAGAAACTAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTTTGAAAGCAAATGGTCCGTTTACGTGTACGACCTGTCGAAATTGCTTACTGCGCCCTACGTACGCCACCTGTGCTGCAGCGATCCCACCAACCAAATCACACCCGTGTGACAAGAGGAGGTAGAGCGAAAGTAG]

[+] EMBL BM630929             [CCGGTCGGATCATGGAACAGGAGGTAAGCATCGTGACGTGCCATCAGTGAAACGTGTTCATTCCTGCACCAATCGCTAGTGCCGCGAGTGGGAGTGGGGGGGGGGGGGGTGAAACGAATCTCAACAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGGCAGCATGGTCAAAAGTGAAGAAACTAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTTTGAAAGCAAATGGTCCGTTTACGTGTACGACCTGTCGAAATTGCTTACTGCGCCCTACGTACGCCACCTGTGCTGCAGCGATCCCACCAACCAAATCACACCCGTGTGACAAGAGGAGGTAGAGCGAAAGTAG]




>consensus_74#1
CCGGTCGGATCATGGAACAGGAGGTAAGCATCGTGACGTGCCATCAGTGAAACGTGTTCA
TTCCTGCACCAATCGCTAGTGCCGCGAGTGGGAGTGGGGGGGGGGGGGGTGAAACGAATC
TCAACAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGGCAG
CATGGTCAAAAGTGAAGAAACTAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTT
TGAAAGCAAATGGTCCGTTTACGTGTACGACCTGTCGAAATTGCTTACTGCGCCCTACGT
ACGCCACCTGTGCTGCAGCGATCCCACCAACCAAATCACACCCGTGTGACAAGAGGAGGT
AGAGCGAAAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_74#0      ------------------------------------------------------------
consensus_74#1      CCGGTCGGATCATGGAACAGGAGGTAAGCATCGTGACGTGCCATCAGTGAAACGTGTTCA 60
                                                                                

consensus_74#0      ------------------------------------------------------------
consensus_74#1      TTCCTGCACCAATCGCTAGTGCCGCGAGTGGGAGTGGGGGGGGGGGGGGTGAAACGAATC 120
                                                                                

consensus_74#0      -CCGCAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGACAG 59
consensus_74#1      TCAACAAACTGGCCAACAATGTTCCGCGATCGTACCATCGCCCAAAATGCTCACTGGCAG 180
                     *  **************************************************** ***

consensus_74#0      CATGGTAAAAAGTGAAGAAAATAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTT 119
consensus_74#1      CATGGTCAAAAGTGAAGAAACTAACCCCAACAACCTCGCGACGAGCCAGCGAAAACTGTT 240
                    ****** ************* ***************************************

consensus_74#0      TGAAAGCAAATGGAATTGGGAATCCGAGTCCGTGTACGTGTACGACCGGTCGAAATTGCT 179
consensus_74#1      TGAAAGCAAATGG---------------TCCGTTTACGTGTACGACCTGTCGAAATTGCT 285
                    *************               ***** ************* ************

consensus_74#0      GACTGCGCCCGACGTACGCCGCCTGTGCTGCAGCGATCCCACCAACGAAATCACACCCGG 239
consensus_74#1      TACTGCGCCCTACGTACGCCACCTGTGCTGCAGCGATCCCACCAACCAAATCACACCCGT 345
                     ********* ********* ************************* ************ 

consensus_74#0      GTGACAAGAGGAGGTAGAGCGAAAGTAGCAAGTACGTCACATCGTGACGACACAACCAAC 299
consensus_74#1      GTGACAAGAGGAGGTAGAGCGAAAGTAG-------------------------------- 373
                    ****************************                                

consensus_74#0      GCCGCCAACACCACCGCCACCACCACCACCACCACAATCAACGACAGAATCAGCAGGAAG 359
consensus_74#1      ------------------------------------------------------------
                                                                                

consensus_74#0      TAACGTCGCACCGGGACCGGCCCCAACATGGCGCTTCTGCGCTCGATAATCGATCTGATG 419
consensus_74#1      ------------------------------------------------------------
                                                                                

consensus_74#0      GATCTGATTGGATGCGATCTGGGAGGACTGATCGAGATAATACGCTTCATTTGGCGCTGC 479
consensus_74#1      ------------------------------------------------------------
                                                                                

consensus_74#0      ATCGTGGAGACCCTCGTCAGCGTCCAGCTGCAGCGCTTGCTGGGCGATGGCACGGGACGA 539
consensus_74#1      ------------------------------------------------------------
                                                                                

consensus_74#0      GGGGGAGGCAATGGATCGAACCGCGCCGAAATGTGTCTGCTGTGAATGCAATCTAGTGGG 599
consensus_74#1      ------------------------------------------------------------
                                                                                

consensus_74#0      CCAACAAACCAGAGGAGCCACTTTAAACGTCTTCCGCACAAGAAAGTTTAGTGAATAGTT 659
consensus_74#1      ------------------------------------------------------------
                                                                                

consensus_74#0      TAAATGGTATCAC 672
consensus_74#1      -------------