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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence
[TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG-AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA-GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGTAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCATGTGCCCGAGCGG]
[+] EMBL CNS0934C [TGGAGTGCAATCCGTTCGCTCGTGGCGTGTGTAA A AACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGATCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGCCTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGAAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGTAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCATGTGCCCGAGCGG]
[+] EMBL BX629069 [ GTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCT ]
[+] EMBL BM589957 [ cCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTCTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGGCCG ]
[+] EMBL BM594676 [ ccgGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTA ]
consensusID : consensus_7402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence
[GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGATCGGATCGCA]
[+] EMBL BX617538 [GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGATCGGATCGCA]
[+] EMBL BX618962 [ AGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGC ]
[-] EMBL CNS0934D [ AGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAAATATCGTCAATGAGCAGCAAAGCGTTGATGAGAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7402#0 TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGG 60
consensus_7402#1 ------------------------------GTAACACAACGGTAGCAATTTGGTAACTGG 30
******************************
consensus_7402#0 CTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC 120
consensus_7402#1 CTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC 90
********* **************************************************
consensus_7402#0 ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC 180
consensus_7402#1 ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC 150
************************************************************
consensus_7402#0 GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC 240
consensus_7402#1 GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC 210
************************************************************
consensus_7402#0 GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT 300
consensus_7402#1 GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT 270
************************************************************
consensus_7402#0 GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA 360
consensus_7402#1 GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA 330
************************************************************
consensus_7402#0 AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG 420
consensus_7402#1 AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG 390
************************************************************
consensus_7402#0 CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA 480
consensus_7402#1 CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA 450
************************************************************
consensus_7402#0 CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC 540
consensus_7402#1 CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC 510
************************************************************
consensus_7402#0 CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA 600
consensus_7402#1 CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA 570
************************************************************
consensus_7402#0 GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC 660
consensus_7402#1 GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC 630
************************************************************
consensus_7402#0 AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA 720
consensus_7402#1 AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA 690
************************************************************
consensus_7402#0 CGAACGCTTCGTCTTTCC-CAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTG 779
consensus_7402#1 CGAACGCTTCGTCTACCTGTTTCACCGCGATCGGAT-CGCA------------------- 730
************** * ** * * * * * *
consensus_7402#0 TAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 839
consensus_7402#1 ------------------------------------------------------------
consensus_7402#0 AGGGCCCCATGTGCCCGAGCGG 861
consensus_7402#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||