|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1342 fasta sequence
[CACCCAAACGTTTGATGGGTGGGGAGAGCATTTGGGGCGGCAGTCTGCTGTGTAGGTGTGCGTTAGTTGCATCTGTAACAAACAATGCATACATTATTGTCCCGCTTACAGCAGGCTGTGGGCACTTTGGCACTTAAAACCATCCTATTTCGGCTGCACTTAGTTCGATTTAGTTAGCTTAAATACTAAAACATGCATTAGTGGGGGTTTGTTTTCGAGTTTTCAGCTCTTGCGCTGTGCGTTGTGTTGTGAGTGTTACGGGGAGTGTGGTTAAGTGTACTACACCTAT-CTTACACATCGATCGACGACGAAATTATGACGGAAACGAA-CACAACACCCAAGGTAGTTAAAAGTAATTAAACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCA-TTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGT-AGGGAATTTT-CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTT-GTTGCCCACCATTAGCATCGGGA-ACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGGGGAAACCGAACGGGAGTGCGGGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGTTTACTAACCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM613502 [CACCCAAACGTTTGATGGGTGGGGAGAGCATTTGGGGCGGCAGTCTGCTGTGTAGGTGTGCGTTAGTTGCATCTGTAACAAACAATGCATACATTATTGTCCCGCTTACAGCAGGCTGTGGGCACTTTGGCACTTAAAACCATCCTATTTCGGCTGCACTTAGTTCGATTTAGTTAGCTTAAATACTAAAACATGCATTAGTGGGGGTTTGTTTTCGAGTTTTCAGCTCTTGCGCTGTGCGTTGTGTTGTGAGTGTTACGGGGAGTGTGGTTAAGTGTACTACACCTAT CTTACACATCGATCGACGACGAAATTATGACGGAAACGAA CACAACA CCAAGGTAGTTAAAAGTAATTAAACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCCGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCA TTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCcgg ]
[-] EMBL BM581234 [ TTCCAGCTCTTGCGCTGTGCGTTGTGTTGTGAGTGTTACCGAGAGTGTGGTTAAGTGTACTACACCTATCCTTACACATCGATCGACGACGAAATTATGACGGAAACGAACCACAACACCCAAGGTAGTTAAAAGTAATTAAACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGAAACGACGCGCTGGTGATCGAGATCGGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACAGCGAACACGAGCAGGAAGCCgg ]
[-] EMBL AL931307 [ TCGACGACGAAATTATGACGG ACCGAA CACAACACCCAAGGTAGTTAAAAGTAATT AACGANCAAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCA TTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACG TAATGCGCAGCTTCGCGCTGCACTCGATGTAAGGGAATTTTCCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGAAACGACGCGCTGGTGATCGAGATCGGACTTGGTTGCCCACCATTAGCATCGGAANCCTCGg ]
[-] EMBL BM577151 [ AGCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCAGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCTTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGGGGAAACCGAACGGGAGTGCGGGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGTTTACTAACCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM617108 [ GCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCAGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCTTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGGGGAAACCGAACGGGAGTGCGGGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGg ]
[-] EMBL BM604190 [ AATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGAGGAAACCGAACGGGAGTGCGAGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGTTTcgg ]
consensusID : consensus_7406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[GGCAAGAATCGGCACGATGGAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTNNTGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTAGGTGTAGGAATCTTCGATTGTAGGATCGTAGGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCAACCAGCAACGACCAGCTTGGANAGGTCTGGGCATAGCCTGCGTGCGTTAGGTTCGTAACGGGACATTCTGGAACCAACCCCTTGGGCCGTGGCCGGATCGAAGGGAAACCGGAACGGGAGTTGCGCACGGAACGAAGGAGGAANGCGATCGTGCACACCGGAACGNTTCCANCAAGANCTTCCCNT]
[+] EMBL BX468146 [GGCAAGAATCGGCACGATGGAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTNNTGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTAGGTGTAGGAATCTTCGATTGTAGGATCGTAGGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCAACCAGCAACGACCAGCTTGGANAGGTCTGGGCATAGCCTGCGTGCGTTAGGTTCGTAACGGGACATTCTGGAACCAACCCCTTGGGCCGTGGCCGGATCGAAGGGAAACCGGAACGGGAGTTGCGCACGGAACGAAGGAGGAANGCGATCGTGCACACCGGAACGNTTCCANCAAGANCTTCCCNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7406#0 CACCCAAACGTTTGATGGGTGGGGAGAGCATTTGGGGCGGCAGTCTGCTGTGTAGGTGTG 60
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 CGTTAGTTGCATCTGTAACAAACAATGCATACATTATTGTCCCGCTTACAGCAGGCTGTG 120
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 GGCACTTTGGCACTTAAAACCATCCTATTTCGGCTGCACTTAGTTCGATTTAGTTAGCTT 180
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 AAATACTAAAACATGCATTAGTGGGGGTTTGTTTTCGAGTTTTCAGCTCTTGCGCTGTGC 240
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 GTTGTGTTGTGAGTGTTACGGGGAGTGTGGTTAAGTGTACTACACCTATCTTACACATCG 300
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 ATCGACGACGAAATTATGACGGAAACGAACACAACACCCAAGGTAGTTAAAAGTAATTAA 360
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 ACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGT 420
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 TAGTAGTGATGAGGAGGGAAGCACGATC-AGCACGAGCAGTGCAAACGTGATGGCGGTTG 479
consensus_7406#1 -------GGCAAGAATCG--GCACGATGGAGCACGAGCAGTGCAAACGTGATGGCGGTTG 51
* ** * * ******* *******************************
consensus_7406#0 TAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCT 539
consensus_7406#1 TAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCT 111
************************************************************
consensus_7406#0 GTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCAC 599
consensus_7406#1 GTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCAC 171
************************************************************
consensus_7406#0 CACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTC 659
consensus_7406#1 CACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTC 231
************************************************************
consensus_7406#0 GATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCG 719
consensus_7406#1 GATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCG 291
************************************************************
consensus_7406#0 CTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTT 779
consensus_7406#1 CTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTT 351
************************************************************
consensus_7406#0 CACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCAC 839
consensus_7406#1 CACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCAC 411
************************************************************
consensus_7406#0 GGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAA 899
consensus_7406#1 GGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAA 471
********* ************** ***********************************
consensus_7406#0 CTCCTCCTGGCCGGCCGTGTCGAGTAT-GTCCAGCTTAGCAGGCGCATCGTCGATGACGC 958
consensus_7406#1 CTCCTCCTGGCCGGCCGTGTCGAGTNNTGTCCAGCTTAGCAGGCGCATCGTCGATGACGC 531
************************* ********************************
consensus_7406#0 ACTGTTT-GGTGTAGGAATCTTCGATTGTAGGATCGTAG-TCGGTTACAAAGTAGCTCTG 1016
consensus_7406#1 ACTGTTTAGGTGTAGGAATCTTCGATTGTAGGATCGTAGGTCGGTTACAAAGTAGCTCTG 591
******* ******************************* ********************
consensus_7406#0 AATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCA-CAACGACCAGCT 1075
consensus_7406#1 AATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCAACCAGCAACGACCAGCT 651
******************************************* *** ************
consensus_7406#0 TG--AAGGTCTGGGCATAGCCTGCGTGCGTTTGGTT-GTAACGGGACATTCTGGAAC--A 1130
consensus_7406#1 TGGANAGGTCTGGGCATAGCCTGCGTGCGTTAGGTTCGTAACGGGACATTCTGGAACCAA 711
** ************************** **** ******************** *
consensus_7406#0 CCCT---GGCCGTGGC-GGATCG--GGGAAACCG-AACGGGAGT---GCGGGG---GAAG 1177
consensus_7406#1 CCCCTTGGGCCGTGGCCGGATCGAAGGGAAACCGGAACGGGAGTTGCGCACGGAACGAAG 771
*** ********* ****** ********* ********* ** ** ****
consensus_7406#0 AGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACAC 1237
consensus_7406#1 GAGGAANGCGATCGTGCACACCGGAACGNTTCCANCAAGANCTTCCCNT----------- 820
* **************** * * * * * *
consensus_7406#0 GATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACC 1297
consensus_7406#1 ------------------------------------------------------------
consensus_7406#0 GACGGCGCGTTTACTAACCGGACGCGTGGGCGGACGCGTGGGCGG 1342
consensus_7406#1 ---------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||