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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 794 fasta sequence
[CCGGCCTTCCTCACGCATACCTCTTATCATCGCATCCCAATCGCAGTTGCACAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGCGCCTTTTTACAG-AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCCCGGGT]
[+] EMBL BM656103 [CCGGCCTTCCTCACGCATACCTCTTATCATCGCATCCCAATCGCAGTTGCACAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACA ]
[+] EMBL CNS08PRU [ CGAATCCCAATCGCAGTTGTACAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAG AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCCCGGGT]
[+] EMBL BM614203 [ ccgCAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAG AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGA ]
[+] EMBL BM639539 [ cCGCCTTTTTACAG AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCAACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGCAG ]
consensusID : consensus_7413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence
[TGCTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGTAGAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGTTTT]
[+] EMBL CNS08EDR [TGCTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGTAGAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGTTTT]
consensusID : consensus_7413#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCGCCCACGCGTCCGCTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCTAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAA]
[+] EMBL BM586388 [CCGCCCACGCGTCCGCTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCTAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAA]
consensusID : consensus_7413#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[CGACCCACGCGTCCGGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAGAAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGA]
[+] EMBL BM654587 [CGACCCACGCGTCCGGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAGAAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7413#0 CCGGCCTTCCTCACGCATACCTCTTATCATCGCATCCCAATCGCAGTTGCACAGAAGGTG 60
consensus_7413#3 ------------------------------------------------------------
consensus_7413#1 ----------------------------------------------------------TG 2
consensus_7413#2 ------------------------------------------------------------
consensus_7413#0 CTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGT 120
consensus_7413#3 ------------------------CGACCCACGCGTCCGGTCTTTAGAAGTTTGTGTGGT 36
consensus_7413#1 CTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGT 62
consensus_7413#2 ---------------------------------------------------CCGCCCACG 9
*
consensus_7413#0 TTTCTGTACTGTTATACTGTGCGCCTTTTTACAGAAAAA-GTGGTAAACCATTTTTAAAA 179
consensus_7413#3 TTTCTGTACTGTTATACTGTGTTCCTTTTTACAGAAAAA-GTGGTAAACCATTTTTAAAA 95
consensus_7413#1 TTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAA 122
consensus_7413#2 CGTCCG--CTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAA 67
** * ************ ****** * ****** *** ****************
consensus_7413#0 TGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGG 239
consensus_7413#3 TGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGG 155
consensus_7413#1 TGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGG 182
consensus_7413#2 TGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGG 127
************************** ************************* *******
consensus_7413#0 TTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 299
consensus_7413#3 TTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 215
consensus_7413#1 GTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 242
consensus_7413#2 GTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 187
*** * ****************************************************
consensus_7413#0 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 359
consensus_7413#3 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 275
consensus_7413#1 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 302
consensus_7413#2 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 247
************************************************************
consensus_7413#0 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 419
consensus_7413#3 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 335
consensus_7413#1 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 362
consensus_7413#2 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 307
************************************************************
consensus_7413#0 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCG 479
consensus_7413#3 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCG 395
consensus_7413#1 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTG 422
consensus_7413#2 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTG 367
********************************************************** *
consensus_7413#0 GAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGT 539
consensus_7413#3 GAGCGA------------------------------------------------------ 401
consensus_7413#1 GAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGT 482
consensus_7413#2 GAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGT 427
******
consensus_7413#0 TGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGC 599
consensus_7413#3 ------------------------------------------------------------
consensus_7413#1 TGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGC 542
consensus_7413#2 TGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGC 487
consensus_7413#0 CCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTA 659
consensus_7413#3 ------------------------------------------------------------
consensus_7413#1 CCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTA 602
consensus_7413#2 CCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCTAATGTA 547
consensus_7413#0 CGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATC 719
consensus_7413#3 ------------------------------------------------------------
consensus_7413#1 CGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATC 662
consensus_7413#2 CGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAA------------------------ 583
consensus_7413#0 GTGCGTTTTCTCGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGC 779
consensus_7413#3 ------------------------------------------------------------
consensus_7413#1 GTGCGTTTTCTCGGTAGAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGTTTT- 721
consensus_7413#2 ------------------------------------------------------------
consensus_7413#0 CAAATGTTCCCGGGT 794
consensus_7413#3 ---------------
consensus_7413#1 ---------------
consensus_7413#2 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||