|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 896 fasta sequence
[GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC--AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA-GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT]
[+] EMBL AL932461 [GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCNGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAACGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGG ]
[+] EMBL BX615416 [ AATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCA ]
[+] EMBL BX621515 [ AACAATGCAAATGTGAGAAAGCAGCGACTCTATAAACAAAGGAACCAGATAAC AAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGTTTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGTGTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATCTTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCAATAT]
[+] EMBL BX613228 [ GTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGGGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGG ]
[+] EMBL BX604495 [ GTGATTGTTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAGGGAAAATGAATGCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGGCAAGGAA GGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGATGGAACAGTGTTGGAAGGGATACAATGAACGAGCAAGGCAAAAGCCGCCGGTGTAGTAATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATATACTTTATTGTAATTTATGAATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAAAAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGCTTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGA ]
consensusID : consensus_7418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCATTAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAA]
[+] EMBL AL931449 [GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCAACGATGTAGATTCATTAAAACTGGCAACAAACAACAACAAAAAAACACACACAAAACCGAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGGCGTAATATTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGCAGCGACTCCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATGTGCTAGGAACTTGTATGACCACACGGATAATATTACTAGAGTGAGAAA]
consensusID : consensus_7418#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACACACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAAATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA]
[+] EMBL BX467368 [CAGAATTCGCCACGAGGTTAGATTCATTAAAACTGCAACAACANACAACAAAAAAACACACACAAAAAGAGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTTTTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTTAAACGCTAAATACTGTCGATGCATCAGCCAGCGATCATATATCAACAAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTCTTTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACGAATGCAAATGTGAGAAAGCAGGCGACGTCTATAGAACAAAGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATACTTTAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGANCAGCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7418#1 ------------------------------------------------------------
consensus_7418#2 ------------------------------------------------------------
consensus_7418#0 GAATCGCCCGAGGACAATTCGCCAGAATCACTAGCACGCACGGGGGAGAGAAATGTTTTC 60
consensus_7418#1 ------------------------------------------------------------
consensus_7418#2 ------------------------------------------------------------
consensus_7418#0 TTTTGTACTAAATTCTCCTCCCTAACGAACTGCATCCTGCAACAATGCAAATGTGAGAAA 120
consensus_7418#1 ------------GGGCAGAATTNGGCGCCCGAGGTGTNAAACTGTAAGCTAAAANCA--A 46
consensus_7418#2 ------------------------------------------------CAGAATTCGCCA 12
consensus_7418#0 GCAGCGACTCTATAAACAAAGGAACCAGATAACAAAAAAAATCTAAATTTAAAGATACTT 180
**
consensus_7418#1 CGATGT-AGATTCATTA-AAACTGGCAACAAACAACAACAA-AAAAACACACACAAAACC 103
consensus_7418#2 CGAGGTTAGATTCATTA-AAACTG-CAACAACANACAACAA-AAAAACACACACAAAAAG 69
consensus_7418#0 TAACTGGGGGTGTATTGTAAACGGAAAACGGTGATTGTTGCTAGGAACTTGTATGACCAC 240
* * * *** **** * *** * *** * *
consensus_7418#1 GAGAAGGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAG-GCGTAATATTT 162
consensus_7418#2 AGAAGTGAAACTAACAGCAATGCAAAACAAACACAAGTAATCCACTAGTGCGTAATATTT 129
consensus_7418#0 ACGGATAATATTACTAG-AGTGAGAAAGAGAAACGGACAAACTTTTAG-GGAAAATGAAT 298
* * ** ** * ** *** * * ** ** * *** * *** *
consensus_7418#1 T-ACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTCT------ 215
consensus_7418#2 TTACGTGTATCACAATCCCACTAGAAACTCCCGCTAAAAGTGATGAGATTTTTT------ 183
consensus_7418#0 GCAAAACTTTTACTACACCAGTGAACAATAGCGGTGGCAGTAGCGGTGTCGTTGTGCTGG 358
* * * ** * *** * * * * ** * *** * * *
consensus_7418#1 ---AAACGCTAAATACTGTCGAT-GCATCAGCCAGC-----GATCATA-----TATCAAC 261
consensus_7418#2 ---AAACGCTAAATACTGTCGAT-GCATCAGCCAGC-----GATCATA-----TATCAAC 229
consensus_7418#0 CAAGGAAGGGAAGAACAATTAATCGAACCAACCAATTTGCTGCTTACTACTACTAACGAT 418
* * ** ** * ** * * ** *** * * * ** * *
consensus_7418#1 AAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGC-- 319
consensus_7418#2 AAATCAGAGACAAACAGACTACAAACATCTTACAAATTCGCCAGAATCACTAGCACGC-- 287
consensus_7418#0 GGAACAGTGTTGGAAGGGATACAATGAACGAGCAAG---GCAAAAGCCGCCGGTGTAGTA 475
* *** * * * ***** * * *** ** * * * * *
consensus_7418#1 ACGGGGGAGAGAAATGTTTTCTTTT-GTA--------CTAAATTCTCCTCCCTAACGAAC 370
consensus_7418#2 ACGGGGGAGAGAAATGTTTTCTTTTTGTA--------CTAAATTCTCCTCCCTAACGAAC 339
consensus_7418#0 ATGCAGGATGGTTGCGTTTAGATTTGCTAAATTATAACTATAACTACTATACTAATGATA 535
* * *** * **** *** ** *** * * **** **
consensus_7418#1 TGCATTCCTGCAACCAATGGCAAATGGTGAGAAAGC-AG-CGACTCCTATA-AAC---AA 424
consensus_7418#2 TGCAT-CCTGCAACGAATG-CAAATG-TGAGAAAGC-AGGCGACGTCTATAGAAC---AA 392
consensus_7418#0 TACTTTATTGTAATTTATG---AATACAGACACAGTTAAGCAGCTGTTGGAAAATGGTAA 592
* * * ** ** *** *** ** * ** * * * * * ** **
consensus_7418#1 AGGAACCAGATAACAAAAAAA--ATCTAA-ATTTAAAGATAC-----TTTAACTGGGGGT 476
consensus_7418#2 AGGAACCAGATAACAAAAGAACAATCTAAGATTTAAAGATAC-----TTTAACTGGGGGT 447
consensus_7418#0 AAAAATGAGATCGGGAACATTCAGCTCATGGCACACACATACACCCATACATTTGCGCGC 652
* ** **** ** * * * **** * * ** * *
consensus_7418#1 GTATT------GTAAACGGAAAACGGTGATG--------TGCTAGGAACTTGTATGACCA 522
consensus_7418#2 GTATT------GTAAACGGAAAACGGTGATTGT------TGCTAGGAACTTGTATGANCA 495
consensus_7418#0 TTATACGAGAAGAAAGCAGGAAACGGCGGCGCAAGATGAAGCTGAAATTTTGTTGAAGGT 712
*** * ** * * ****** * *** * **** *
consensus_7418#1 CACGGATAATATTACTAGAGTGAGAAA--------------------------------- 549
consensus_7418#2 GCACGATAATATTACTAGAGTGAGAAAGAGAAACGGACAAACTTTTAAGGGAA------- 548
consensus_7418#0 TTTTTTTTGTCAGATTCAAGTGAGGAAAAGGGTCANGTTACGGTTTTCAAAATGACCGGT 772
* * * * ****** **
consensus_7418#1 ------------------------------------------------------------
consensus_7418#2 ------------------------------------------------------------
consensus_7418#0 GTGGGAAAGGGTGCGAAATGCGATAGATACTAACCATAAGAAATGAAAGTAATTAACATC 832
consensus_7418#1 ------------------------------------------------------------
consensus_7418#2 ------------------------------------------------------------
consensus_7418#0 TTACTCAGTACTGCGAGAAGCATAGCTCATCACGGCAAGTTGCACATGGTGTTTAGAGCA 892
consensus_7418#1 ----
consensus_7418#2 ----
consensus_7418#0 ATAT 896
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||