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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1249 fasta sequence
[CCGCATTGCTTGCTTAGATCAAGAATATAGTCTCTTGTTTCAATTTATTGTACTATCATCAAAATGGAAACGGAAAACTTACAACCTGTTGCTGCATTACCTAATGTGAATGCTTCACTTGGATTGATTCCCAATAAACGTCCCATTTGTGTCATTGTTCTTGGCATGGCTGGTTCGGGTAAAACAACTTTTGTGAAGAAGTTAGCGCAATACCGCCATGCAAATGGCTCATTGCCCTACTTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGTGATACGATAAAATACAAGGAAGTTATGAAA-CGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTTATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACCTTTATGTCTAATATGTTATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAA-TTTCGCGATGCAGT-GGATGCAAGATTTTGAAGCGTTTCAAGAATCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTT-AAAATCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATTTGAAAATTT-GTTCATGCTACTAAACGAAGCTGTCGA-TGAATATGACAGTGATTATAAACAGGAGTATAATAAATTACGAGCAGAACGGGTAAACAATTCAGGAGAGCATTTTAAACAACCTCCAAACGGCCACTTGGGTGAAGAAGTGTCTTTTCGAAGCTATAACAATGAGAAAAATCTATGTAATGAACCGATTTATTTAAAACATCCTGCAAATGAAAGTTCCGATGATGAAGAAGGACAAGAATGTGAAGGTTCAATCATAACTACGGGAGACGACGAAGCGGAAGAAATAAACTTCAACAATTATATTCAACAGCACCGTCGTCAACAAGCTGAAAAACATGGAAAACAATTCAACAAATCATTGTGAAAATTTCTGTGTAATAAATTTCAATTCCCCGTGCAAA]
[+] EMBL BM614503 [CCGCATTGCTTGCTTAGATCAAGAATATAGTCTCTTGTTTCAATTTATTGTACTATCATCAAAATGGAAACGGAAAACTTACAACCTGTTGCTGCATTACCTAATGTGAATGCTTCACTTGGATTGATTCCCAATAAACGTCCCATTTGTGTCATTGTTCTTGGCATGGCTGGTTCGGGTAAAACAACTTTTGTGAAGAAGTTAGCGCAATACCGCCATGCAAATGGCTCATTGCCCTACTTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGTGATACGATAAAATACAAGGAAGTTATGAAA CGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTTATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACCTTTATGTCTAATATGTTATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAATTTTCGCGATGCAGTGGGATGCA ]
[+] EMBL BX622647 [ ACTATCATCAAAATGGAAACGGAAAACTTACAACCTGTTGCTGCATTACCTAATGTGAATGCTTCACTTGGATTGATTCCCAATAAACGTCCCATTTGTGTCATTGTTCTTGGCATGGCTGGTTCGGGTAAAACAACTTTTGTGAAGAAGTTAGCGCAATACCGCCATGCAAATGGCTCATTGCCGTACTTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGTGATACGATAAAATACAAGGAAGTTATGAAA CGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTTATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACCTTTATGTCTAATATGTTATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAA TTTCGCGATGCAGT GGATGCAAGATTTTGAAGCGTTTCAAGAATCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTTAAAAATCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATTTGAAAATTT GNTCATGCTACTAAACGAAGCTGTCGA TGAATATGACAGT ]
[+] EMBL BX625471 [ AAGTTAGCGCAATACCGCCATGCAAATGGCTCATTGCCCTACTTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGTGATACGATAAAATACAAGGAAGTTATGAAA CGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTTATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACCTTTATGTCTAATATGTTATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAA TTTCGCGATGCAGT GGATGCAAGATTTTGAAGCGTTTCAAGAATCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTT AAAATCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATTTGAAAATTTGGTTCATGCTACTAAACGAAGCTGTCGA TGAATATGACAGTG ]
[+] EMBL CNS08CKR [ acacacATACAAGGAAGTTATGAAACCGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTTATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTTATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTA CTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACCTTTATGTCTAATATATTATATGCGTGTCCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAA TTTCGCGATGCAGT GGATGCAAGATTTTGAAGCGTTTCAAGAATCATTGGAAAACGAGAATCCTTACATAAGTTATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTT AAAATCG ]
[-] EMBL CNS08CKS [ TCAACTAGTCCAACCACCTTTATGTCTAATATGTAATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCCACATACAGGGACATAA TTTCGCGATGCAGT GGATGCAAGATTTTGAAGCGTTTCAAAAATAATTGGAAAACGAGACTGCTTACATAAGTAATTTTAAACGTACGATGTCTTTAACACTCGACGAGTTTTATAAAAACTT AAAATCGTGTGGAGTTTCCTCAAACACGGGCATAGGATTTGAAAATTT GTTCATGCTACTAAACGAAGCTGTCGATTGAATATTACAGTGATTATAAACAGGAGTATAATAAATTACGAGCAGAACGGGTAAACAATTCAGGAGAGCATTTTAAACAACCTCCAAACGGCCACTTGGGTGAAGAAGTGTCTTTTCGAAGCTATAACAATGAGAAAAATCTATGTAATGAACCGATTTATTTAAAACATCCTGCAAATGAAAGTTCCGATGATGAAGAAGGACAAGAATGTGAAGGTTCAATCATAACTACGGGAGACGACGAAGCGGAAGAAATAAACTTCAACAATTATATTCAACAGCACCGTCGTCAACAAGCTGAAAAACATGGAAAACAATTCAACAAATCATTGTGAAAATTTCTGTGTA ]
[+] EMBL BX617045 [ GTTTCAAGAATCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTT AAAATCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATTTGAAAATTT GTTCATGCTACTAAACGAAGCTGTCGA TGAATATGACAGTGATTATAAACAAGAGTATAATAAATTACGAGCAGAACGGGTAAACAATTCAGCAGAGCATTTTACACAACCTCCAAACGGCGACTTGGGTGAAGAAGTGTCTTTTCGAAGCTATAACAATGAAAAAAATCTATGTAATGAACCGGTTTATTTAAAACATCCTGCAAATGAAAGTTCCGATGATGAAGAAGGACAAGAATGTGAAGGTTCAATCATAACTACGGGAGACGACGAAGCGGAAGAAATAAACTTCAACAATTATATTCAGCAGCACCGTCGTCAACAAGCTGAAAAACATGGAAAACAATTCAACAAATCATTGTGAAAATTTCTGTGTAATAAATTTCAATTCCCCGTGCAAA]
consensusID : consensus_7436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CCGCCCACGCGTCCGAAATGGCTCATTGCCCTACTTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGTGATACGATAAAATACAAGGAAGTTATGAAACGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTAATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACGTTTATGTCTAATATGTTATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAATTTCGCGATGCAGTGGATGCAAGATTTTGAAGCGTTTCAAGAATCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTTAAAATTCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATTTGAAAATTTGTTCATGCTACTGGAACGAAGCTGTCGATGAATATGACAGTGATTATAAACAGGAGTATAATAAATT]
[+] EMBL BM581987 [CCGCCCACGCGTCCGAAATGGCTCATTGCCCTACTTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGTGATACGATAAAATACAAGGAAGTTATGAAACGCTACAATCTTGGTCCAAATGGAGGAATAGTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAATGCACAGAAAACGCATGAATATTGTGTAATAGACACCCCGGGACAAATAGAAGTATTTACATGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATTGTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACGTTTATGTCTAATATGTTATATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATCGACATACAGGAACATAATTTCGCGATGCAGTGGATGCAAGATTTTGAAGCGTTTCAAGAATCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTCGACGAGTTTTATAAAAACTTAAAATTCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATTTGAAAATTTGTTCATGCTACTGGAACGAAGCTGTCGATGAATATGACAGTGATTATAAACAGGAGTATAATAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7436#0 CCGCATTGCTTGCTTAGATCAAGAATATAGTCTCTTGTTTCAATTTATTGTACTATCATC 60
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 AAAATGGAAACGGAAAACTTACAACCTGTTGCTGCATTACCTAATGTGAATGCTTCACTT 120
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 GGATTGATTCCCAATAAACGTCCCATTTGTGTCATTGTTCTTGGCATGGCTGGTTCGGGT 180
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 AAAACAACTTTTGTGAAGAAGTTAGCGCAATACCGCCATGCAAATGGCTCATTGCCCTAC 240
consensus_7436#1 --------------------------CCGCCCACGCGTCCGAAATGGCTCATTGCCCTAC 34
* *** *******************
consensus_7436#0 TTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGT 300
consensus_7436#1 TTAATTAATTTAGATCCTGCGTGCCACGAAACTCCCTATCCAGTAAACATTGATATCCGT 94
************************************************************
consensus_7436#0 GATACGATAAAATACAAGGAAGTTATGAAACGCTACAATCTTGGTCCAAATGGAGGAATA 360
consensus_7436#1 GATACGATAAAATACAAGGAAGTTATGAAACGCTACAATCTTGGTCCAAATGGAGGAATA 154
************************************************************
consensus_7436#0 GTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAAT 420
consensus_7436#1 GTTACAGCTTTAAACTTGTTTTCCACTAAATTTGGAAAAGTGATTGATCTGATTGAAAAT 214
************************************************************
consensus_7436#0 GCACAGAAAACGCATGAATATTGTGTTATAGACACCCCGGGACAAATAGAAGTATTTACA 480
consensus_7436#1 GCACAGAAAACGCATGAATATTGTGTAATAGACACCCCGGGACAAATAGAAGTATTTACA 274
************************** *********************************
consensus_7436#0 TGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATT 540
consensus_7436#1 TGGTCGGCATCTGGCACAATAATTACTGAGGCGTTAGCTACTGCATTTCCTACTGTTATT 334
************************************************************
consensus_7436#0 GTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACCTTTATGTCTAATATGTTA 600
consensus_7436#1 GTATACGTAATGGATATCGTCCGTTCAACTAGTCCAACCACGTTTATGTCTAATATGTTA 394
***************************************** ******************
consensus_7436#0 TATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATC 660
consensus_7436#1 TATGCGTGTTCTATCTTGTACAAAGCACGTTTACCTTTCGTTATTGCAATGAACAAAATC 454
************************************************************
consensus_7436#0 GACATACAGGAACATAATTTCGCGATGCAGTGGATGCAAGATTTTGAAGCGTTTCAAGAA 720
consensus_7436#1 GACATACAGGAACATAATTTCGCGATGCAGTGGATGCAAGATTTTGAAGCGTTTCAAGAA 514
************************************************************
consensus_7436#0 TCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTC 780
consensus_7436#1 TCATTGGAAAACGAGACTGCTTACATAAGTAATCTTACACGTACGATGTCTTTGACACTC 574
************************************************************
consensus_7436#0 GACGAGTTTTATAAAAACTTAAAAT-CGTGTGGAGTTTCCTCAAAGACGGGCATAGGATT 839
consensus_7436#1 GACGAGTTTTATAAAAACTTAAAATTCGTGTGGAGTTTCCTCAAAGACGGGCATAGGATT 634
************************* **********************************
consensus_7436#0 TGAAAATTTGTTCATGCTACTA-AACGAAGCTGTCGATGAATATGACAGTGATTATAAAC 898
consensus_7436#1 TGAAAATTTGTTCATGCTACTGGAACGAAGCTGTCGATGAATATGACAGTGATTATAAAC 694
********************* *************************************
consensus_7436#0 AGGAGTATAATAAATTACGAGCAGAACGGGTAAACAATTCAGGAGAGCATTTTAAACAAC 958
consensus_7436#1 AGGAGTATAATAAATT-------------------------------------------- 710
****************
consensus_7436#0 CTCCAAACGGCCACTTGGGTGAAGAAGTGTCTTTTCGAAGCTATAACAATGAGAAAAATC 1018
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 TATGTAATGAACCGATTTATTTAAAACATCCTGCAAATGAAAGTTCCGATGATGAAGAAG 1078
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 GACAAGAATGTGAAGGTTCAATCATAACTACGGGAGACGACGAAGCGGAAGAAATAAACT 1138
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 TCAACAATTATATTCAACAGCACCGTCGTCAACAAGCTGAAAAACATGGAAAACAATTCA 1198
consensus_7436#1 ------------------------------------------------------------
consensus_7436#0 ACAAATCATTGTGAAAATTTCTGTGTAATAAATTTCAATTCCCCGTGCAAA 1249
consensus_7436#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||