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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 903 fasta sequence
[ATAAAAATTCCATCTTATAATGAAAGCATACCGGTCACGGCCCGGCTACGTTTGTTCCAGCCGTTAGCGTTGCGGCACGTTGTTTGACCTTGCAGCGATAACGGCACGCAAGTGTCTACAGCAGACTTGAGAGACGACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC-GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC-GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG-TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG-GCCGATGCC-GGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC-G-GACGTCTGCAGGAAG-GTGC-GCGAGTC-TGGCATGAAGG-TTGGGCTGGC-GCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACA-TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG-GGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGTGTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGGACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTGCAGAGTGCTATTAATCATGGAGGACAATGCTAATCACAGGNCGCACGCAATAATACGCTAAATATAC]
[+] EMBL BX611838 [ATAAAAATTCCATCTTATAATGAAAGCATACCGGTCACGGCCCGGCTACGTTTGTTCCAGCCGTTAGCGTTGCGGCACGTTGTTTGACCTTGCAGCGATAACGGCACGCAAGTGTCTACAGCAGACTTGAGAGACGACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGG CGATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAACCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTC TGGCATGAAGG TCGGGCTGGC GCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG GGGGCAAAAGTTTATGGCCAATATGATGCCGAAGGTCCAGTGGCTAAGG ]
[+] EMBL BX625937 [ gcACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTCTTGGCATGAAGG TTGGGCTGGC GCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGT ]
[+] EMBL AL931614 [ AAGAA TTGC CCGA GGTTCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCTGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGACTGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGNGCCGATGCCTGGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGCTGNGACGTCTGCAGGAAGTGTGCTGCGAGTC TGGCATGAAGGTTTGGGCTGGCTGCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCACTACATTTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGGAGGGGCAAAAGTTTATGGGCGATATGATGCCGAAGGTCCAGTGGCTAAGGG ]
[+] EMBL BM591514 [ CCGAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTC TGGCATGAAGG TCGGGCTGGC GCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG GGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGTGTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGGACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTGCAGAGTGCTATTAATCATG ]
[+] EMBL BX623177 [ ACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTC TGGCATGAAGG TTGGGCTGGC GCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG GGGGCAAAAGTTTATGGGCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGTGTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGGACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTGCAGAGTGCTATTAATCATGGAGGACAATGCTAATCACAGGNCGCACGCAATAATACGCTAAATATAC]
consensusID : consensus_7437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCGCGCTGTACAAGAAGAAAGTAGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTCGGGCTGGCGCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGGTGTTGGGCCGGCCACGATTGAGCAGCTCGAAGGCGGGTGCCAATATGATCG]
[+] EMBL BM590145 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCGCTGTACAAGAAGAAAGTAGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTCGGGCTGGCGCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGGTGTTGGGCCGGCCACGATTGAGCAGCTCGAAGGCGGGTGCCAATATGATCG]
consensusID : consensus_7437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[GGCCAAGAATCGGCACGNGGAGCAGACTTGAGAGCACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCCGGCCATCTCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGGCGAGTCTGGCATGAAGGTCGGGGCTGGGCGCTCAAACCGGG]
[+] EMBL BX467914 [GGCCAAGAATCGGCACGNGGAGCAGACTTGAGAGCACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCCGGCCATCTCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGGCGAGTCTGGCATGAAGGTCGGGGCTGGGCGCTCAAACCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7437#0 ATAAAAATTCCATCTTATAATGAAAGCATACCGGTCACGGCCCGGCTACGTTTGTTCCAG 60
consensus_7437#1 ------------------------------------------------------------
consensus_7437#2 ------------------------------------------------------------
consensus_7437#0 CCGTTAGCGTTGCGGCACGTTGTTTGACCTTGCAGCGATAACGGCACGCAAGTGTCTACA 120
consensus_7437#1 ------------------------------------------------------------
consensus_7437#2 -----------------------------------------GGCCAAGAATCGGCACGNG 19
consensus_7437#0 GCAGACTTGAGAGACGACAAGACAAACGATCG-CGCGCTGTACAAGAAGAAAGTTGCTCC 179
consensus_7437#1 -----CCGCCCACGCGTCCGCCCACGCGTCCGGCGCGCTGTACAAGAAGAAAGTAGCTCC 55
consensus_7437#2 GAGCAGACTTGAGAGCACAAGACAAACGATCG-CGCGCTGTACAAGAAGAAAGTTGCTCC 78
* * ** ** ** ********************* *****
consensus_7437#0 AAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAG 239
consensus_7437#1 AAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAG 115
consensus_7437#2 AAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAG 138
************************************************************
consensus_7437#0 CTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTG 299
consensus_7437#1 CTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTG 175
consensus_7437#2 CTGCACGAGGAGTCGGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTG 198
***************************** ******************************
consensus_7437#0 ATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGA 359
consensus_7437#1 ATGGACGGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGA 235
consensus_7437#2 ATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGA 258
***************** ******************************************
consensus_7437#0 AACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGG 419
consensus_7437#1 AACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGG 295
consensus_7437#2 AACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGG 318
************************************************************
consensus_7437#0 ATTGAACCGATGGCCGATGCCGGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTC 479
consensus_7437#1 ATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTC 355
consensus_7437#2 ATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTC 378
************************** *********************** *********
consensus_7437#0 GATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTTGGGCTGGCG 539
consensus_7437#1 GATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTCGGGCTGGCG 415
consensus_7437#2 GATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCCGGC---CATCTCGAGCCGGTC 435
************************************** *** * * * ** **
consensus_7437#0 CTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTG 599
consensus_7437#1 CTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTG 475
consensus_7437#2 CTC------GATAGCGTGGCGGACGTC-TGCAGGAAGGTGCGGCGAGT-CTGGCATGAAG 487
*** * * * ** *** * * *** * * *** * * **** *
consensus_7437#0 CTGGTGAT--GACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGC 657
consensus_7437#1 CTGGTGAT--GACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGC 533
consensus_7437#2 GTCGGGGCTGGGCGCTCAAACCGGG----------------------------------- 512
* * * * ** * * ** **
consensus_7437#0 CGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGG-T 716
consensus_7437#1 CGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGGT 593
consensus_7437#2 ------------------------------------------------------------
consensus_7437#0 GTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGG 776
consensus_7437#1 GTTGGGCCGGCCACGATTGAGCAG--CTCGAAGGCGGGTGCCAATATGATCG-------- 643
consensus_7437#2 ------------------------------------------------------------
consensus_7437#0 ACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTG 836
consensus_7437#1 ------------------------------------------------------------
consensus_7437#2 ------------------------------------------------------------
consensus_7437#0 CAGAGTGCTATTAATCATGGAGGACAATGCTAATCACAGGNCGCACGCAATAATACGCTA 896
consensus_7437#1 ------------------------------------------------------------
consensus_7437#2 ------------------------------------------------------------
consensus_7437#0 AATATAC 903
consensus_7437#1 -------
consensus_7437#2 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||