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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1567 fasta sequence
[CCGGGGCGACAGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCCGAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGCGTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCACTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCATCACGGCCGAGAAGCGCCAGTACGGCGAGTACATCTGCCAGGCGACGAACAAGCTGGGCGATGCGGAGGGCCGCGTCGAGTTTACCGAGTCGGTCATTCCCGTGTGCCCGCCGGCCTGTGGGCAGGCACGCTACGGCGGCGGCGCTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACACTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTAGGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTGAGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTTAAATTTATATGCTTTAGAGCATATTGTATTTTGTAAGAGAAGTGGATTCGTATACAGTAAAAATACATACACCAATACATAATTGATTCCCTCCAAGGNATCTGTGAAGATGAGATAGCTCTTGTAGGTGTAGGAACGGGAAGAGAAATGATTGGCTTTTCCCAATATCGGTGGCGCTTGGTTTAAGCGACAATATCGAATGATGGGGAAGTCGATAAGAAGGTAGTCGTAAAGCTTTCTTTTTCGAATCGAGTATAATGTGAACAATAATGCTGGAAGGGAGATAAATGGTTTTATAGGGTGGATGCAGATAGAAGAAAAGCATTCAACAATCGAAAACAAATAATAGAGGCAAGAAAAGTGCTGAAGCTTTTAATATCGCGCTTGTGTATCGATGAACGTTTTCCCCCCAGAAATTACCTCTAAACTT]
[+] EMBL BM577655 [CCGGGGCGACAGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCCGAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGCGTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCACTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCATCACGGCCGAGAAGCGCCAGTACGGCGAGTACATCTGCCAGGCGACGAACAAGCTGGGCGATGCGGAGGGCCGCGTCGAGTTTACCGAGTCGGTCATTCCCGTGTGCCCGCCGGCCTGTGGGCAGGCACGCTACGGCGGCGGCGCTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTG ]
[+] EMBL BM645068 [ ccgGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCCGAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGCGTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCACTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCATCACGGCCGAGAAGCGCCAG ]
[+] EMBL BX618601 [ GGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACACTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGT ]
[+] EMBL BX605894 [ GAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGTTTTACACTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTAGGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTGAGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTT ]
[+] EMBL BX628902 [ TTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTAGGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTGAGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTTAAATTTATATGCTTTAGAGCATATTGTATTTTGTAAGAGAAGTGGATTCGTATACAGTAAAAATACATACACCAATACATAATTGATTCCCTCCAAGGNATCTGTGAAGATGAGATAGCTCTTGTAGGTGTAGGAACGGGAAGAGAAATGATTGGCTTTTCCCAATATCGGTGGCGCTTGGTTTAAGCGACAATATCGAATGATGGGGAAGTCGATAAGAAGGTAGTCGTAAAGCTTTCTTTTTCGAATCGAGTATAATGTGAACAATAATGCTGGAAGGGAGATAAATGGTTTTATAGGGTGGATGCAGATAGAAGAAAAGCATTCAACAATCGAAAACAAATAATAGAGGCAAGAAAAGTGCTGAAGCTTTTAATATCGCGCTTGTGTATCGATGAACGTTTTCCCCCCAGAAATTACCTCTAAACTT]
consensusID : consensus_7444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[GCACATGCTGCCTTGTTNTTTGNATTTTTTTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATGGGGTTTACACTTTATTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTACGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAAGC]
[+] EMBL BX466682 [GCACATGCTGCCTTGTTNTTTGNATTTTTTTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTGGCCACCGGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACATTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAAAGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCGTTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGATCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATGGGGTTTACACTTTATTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTACGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAAGC]
consensusID : consensus_7444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[CCGCCCGCGCGTCCGAATGGAACCAAATCCGGTTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACGCTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACGCGGACACGGAGGCGAAGAGTAAGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGGTCCA]
[+] EMBL BM577579 [CCGCCCGCGCGTCCGAATGGAACCAAATCCGGTTCATAAAAGCGTCATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGCAGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTTTACGCTTTTTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTACCTAAAATAGTGCCTGAAAGGAAACTTTTTCGAACAATCTTTGTCACTTTGGCCGGGGACCACACATTCTCAAACACATATCGGAACCGGAACAGTACGCGGACACGGAGGCGAAGAGTAAGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7444#0 CCGGGGCGACAGGCGTAACGTGAATCTGGAGGTGGAGTTTGCGCCGGTCGTGACCGTGCC 60
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 GAGACCGCGCGTCGAGCAGGCCCTGCAGTACGATATGGATCTGGAGTGCCACATCGAGGC 120
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 GTACCCGCCGCCGGCCATCCGCTGGCTGAAGGATAGCGTGCAGCTGTCCAGCAACCAGCA 180
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 CTACCAGCTGTCCCAGTTTGCGACCGCGGACGAGTTCACCGACTCGACGCTGCGCGTCAT 240
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 CACGGCCGAGAAGCGCCAGTACGGCGAGTACATCTGCCAGGCGACGAACAAGCTGGGCGA 300
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TGCGGAGGGCCGCGTCGAGTTTACCGAGTCGGTCATTCCCGTGTGCCCGCCGGCCTGTGG 360
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 -----------------------------------------------------GCACATG 7
consensus_7444#0 GCAGGCACGCTACGGCGGCGGCGCTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGT 420
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 CTGCCTTGTTNTTTGNATTTTTTTAGTGCGATTTCCGTCTCGAGCGTCCTGATGGCGGTG 67
consensus_7444#0 GGCCACCGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACA 480
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 GCCACCGGTGCTGACGATGGTGGCGATTGCGCAGTACGTGAAGCGAGCATAAGCCACACA 127
consensus_7444#0 TTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAA 540
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 TTCAGCCGCCGCATTCCAGGAAGAAAAATGAAACACCGAAGTCGAACCAAAACAGAGGAA 187
consensus_7444#0 AGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCG 600
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 AGGGACAGAGCAAGAAGCAGAAGCATCACAATCAGGAAAATGTCTTCAATCACCACACCG 247
consensus_7444#0 TTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGA 660
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 TTTTGTCGATGCATCAATATTTGATGGAAGGACGATAGCCTCAGGACGACCGATCACTGA 307
consensus_7444#0 TCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGT 720
consensus_7444#2 ---------------CCGCCCGCGCGTCCGAATGGAACCAAATCCGGTTCATAAAAGCGT 45
consensus_7444#1 TCACCGATCATTCAACTGATCGGGGGATGAAATGGAACCAAATCCGGGTCATAAAAGCGT 367
* * ** * * ***************** ************
consensus_7444#0 CATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGC 780
consensus_7444#2 CATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGC 105
consensus_7444#1 CATATCGAACAACACATCTCTCTTTCTGTAGCACGTTGAGCCAGATTTAGCACATCCAGC 427
************************************************************
consensus_7444#0 AGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTT 840
consensus_7444#2 AGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATAGGGTT 165
consensus_7444#1 AGCACAATCATTCATATACATCCTCAAAAGCAGATCGTAAAAGTGAGCGTAAATGGGGTT 487
****************************************************** *****
consensus_7444#0 TACACTTT-TTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTAC 899
consensus_7444#2 TACGCTTT-TTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTAC 224
consensus_7444#1 TACACTTTATTTGAAGGTTGAGTTTTAGGTCTTTTGACGAATGACGACACCAATTACTAC 547
*** **** ***************************************************
consensus_7444#0 CTAAAATAGTGCCTGAAAGGAAACTTTTT-CGAACAATCTTTGTCACTTTGGCCGGGGAC 958
consensus_7444#2 CTAAAATAGTGCCTGAAAGGAAACTTTTT-CGAACAATCTTTGTCACTTTGGCCGGGGAC 283
consensus_7444#1 CTAAAATAGTGCCTGAAAGGAAACTTTTTACGAACAATCTTTGTCACTTTGGCCGGGGAC 607
***************************** ******************************
consensus_7444#0 CACACATTCTCAAACACATATCGGAACCGGAACAGTACACGGACACGGAGGCGAAGAGTA 1018
consensus_7444#2 CACACATTCTCAAACACATATCGGAACCGGAACAGTACGCGGACACGGAGGCGAAGAGTA 343
consensus_7444#1 CACACATTCTCAAAGC-------------------------------------------- 623
**************
consensus_7444#0 GGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGATCCAGACGAATGTTTG 1078
consensus_7444#2 AGAAGATGAAATAGCAACTTTTCTTTGGAAAATCGGGACATTGGTCCA------------ 391
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 AGATAGCATGTAAGCAAACAACAAGCAGAAAGTGTGTAAATCGTGCAAAACCTTTTTTTA 1138
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 AATTTATATGCTTTAGAGCATATTGTATTTTGTAAGAGAAGTGGATTCGTATACAGTAAA 1198
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 AATACATACACCAATACATAATTGATTCCCTCCAAGGNATCTGTGAAGATGAGATAGCTC 1258
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TTGTAGGTGTAGGAACGGGAAGAGAAATGATTGGCTTTTCCCAATATCGGTGGCGCTTGG 1318
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TTTAAGCGACAATATCGAATGATGGGGAAGTCGATAAGAAGGTAGTCGTAAAGCTTTCTT 1378
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TTTCGAATCGAGTATAATGTGAACAATAATGCTGGAAGGGAGATAAATGGTTTTATAGGG 1438
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TGGATGCAGATAGAAGAAAAGCATTCAACAATCGAAAACAAATAATAGAGGCAAGAAAAG 1498
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TGCTGAAGCTTTTAATATCGCGCTTGTGTATCGATGAACGTTTTCCCCCCAGAAATTACC 1558
consensus_7444#2 ------------------------------------------------------------
consensus_7444#1 ------------------------------------------------------------
consensus_7444#0 TCTAAACTT 1567
consensus_7444#2 ---------
consensus_7444#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||