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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1275 fasta sequence
[CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT-GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG-C-GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT-GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAA-TATGCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACTTTAAAAAAAAAAAAA]
[+] EMBL BM615649 [CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGTGGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGACGGATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGC ]
[+] EMBL BM623749 [ ccgGTGGCGCTTGCGTGCGATACCCAGCTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCGCACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTGGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACC ]
[+] EMBL CNS09LIY [ atgctttcACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAA TATGCG ]
[+] EMBL BM629331 [ CGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAACACGAGCAACTGTTTGCCGACTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGACGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGTAATGCCACGTTCAGCAGGAAGCTAGTGCTTGCCAATGTGCTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTTAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAAGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGc ]
[+] EMBL BX623301 [ GGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCACCGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCGGGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAATGTGCTTATGTTTGGT GTGGCCGGGTTCATCACCTATCATTGCTTCAACCATG C GATGGTGCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGCCGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGTGTTCCTGCACTGGCTGCT GCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAAGTATGCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCT ]
[-] EMBL CNS09LIZ [ GCATCGCACGAAGGTGTTCCTGCACTGGCTGCTGGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTGCATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTTCGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAAGTATGCGTTTCAG TGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTGGGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGGTTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCGCGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTGCGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTAAAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTACATACAACTTTAAAAAAAAAAAAA]
consensusID : consensus_7449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence
[CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC]
[+] EMBL BX466118 [CCAGAATCCGCACGATGNAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAGCTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCGTACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAACAACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAGATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACCAGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7449#0 -------CCGCGCTGTTCTGAGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAG 53
consensus_7449#1 CCAGAATCCGCACGATGN--AGACGCGGGTACGGTTGTGGCGCTTGCGTGTGATACCCAG 58
**** * * ****************************************
consensus_7449#0 CTACACTGCTACACCGGTATGGGGAAAGATGACCGAGAATTTCAACCATCGGCGGTGCCG 113
consensus_7449#1 CTACACTGCTACACCGGCATGGGGAAAGATGACCGAGAATCTCAACCATCGGCGGTGCCG 118
***************** ********************** *******************
consensus_7449#0 TACGATCGACTGCTTCCCGATGCCAGATCAACAGCTGATTTACTGGGTGCGCAACAAAAC 173
consensus_7449#1 TACGATCGACTGCTTCCCGATGCCGGATCAACAGCTGATTTACTGGGTGCGCAACAAAAC 178
************************ ***********************************
consensus_7449#0 AACCACGACGCAGCAACAGCAGCAGCGGCGACGGCAGGAGTTGTCGCAAGCCCCCGTGAG 233
consensus_7449#1 AACCACGACGCAGCAACAGCAGCAGCGGCGGCGGCAGGAGTTGTCGCAAGCCCCCGTGAG 238
****************************** *****************************
consensus_7449#0 ATAAGACAAACGCGTCATCCAGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACC 293
consensus_7449#1 ATAAGACAAACGCGTCATCCCGTCTACGGTACGTATCAGAACGGCGCACGGCACGCCACC 298
******************** ***************************************
consensus_7449#0 AGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAA-CACGAGCAACTGTTTGCCGA 352
consensus_7449#1 AGTATGGGCGGGGAAGAGCCGGAAGGAACCAGCGCAGAAACACGAGCAACTGTTTGC--- 355
*************************************** *****************
consensus_7449#0 CTACCGGGACGACGACGAGAACGACGAGCGCAAGGATTCGATCGACGAAACGACCGTCAC 412
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 CGGCGAGGGGATGATGGATCGTGCAAAACGGAACGCCAGCAATCGGAACGCGAACAACCG 472
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 GGCAGTGGAGCGAAATGCCACCTTCAGCAGAAAGCTAGTGCTTGCCAATGTGTTGATCAA 532
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 TGTGCTTATGTTTGGTGTGGCCGGGTTCATCACCTATCATTGCTTCAACCATGCGATGGT 592
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 GCTGTTCTCCTGGCACCCAACGTTCATGTCCATTGGGTACCTGATCCTCATGTCCCAGGC 652
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 CGTGCTGACAATGTCCGGAGCGAACTACTTCACCCACCGCTGCCAGCATCGCACGAAGGT 712
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 GTTCCTGCACTGGCTGCTGCAGGCCGTGGCCGGCGTACTCATCTCGATCGCGTCCGTGTG 772
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 CATCTTCCTCAACAAGGTACGGCTCGGTAAGCCCCACTTCCAGACGCTGCACGGAATCTT 832
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 CGGGCTGGTGACGGTGTGCCTCACGCTCGTATCGATCGCCGGTGGCGTTACAACGAATAT 892
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 GCGTTTCAGCTGCGCCACTATATGCGCCCGATCTACAGCAAGCTCGGGCACGGTATCGTG 952
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 GGCACGGTGTCCTACCTGCTCGCCACTGTCACGATCTCGCTTGGCGTTTATTCGCGCTGG 1012
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 TTCCAGGAGGACAACGATGCCAACGTGCGGTAACGCTGGTGATAGCGATCGGTACGGTCG 1072
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 CGCTGTATGTGATCGTTACCCCGATTGCCAACACGGTGCAGCGAAATCCGCACGGCCGTG 1132
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 CGGACCACGCTTTAAGCGCACACACACAGCATAGTTTAAGTTATAAGACCTGGGAAATTA 1192
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 AAAATTTCCTTTCTCATCCATTTGAAAGACACCGTGACGAAAGCAATAATAAAATGTTAC 1252
consensus_7449#1 ------------------------------------------------------------
consensus_7449#0 ATACAACTTTAAAAAAAAAAAAA 1275
consensus_7449#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||