cluster # 7452

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Anopheles gambiae
cluster # 7452 cluster # 7452 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7452#0 length = 1074 sequences # 6

consensus_7452#1 length = 424 sequences # 1

consensusID : consensus_7452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1074
fasta sequence

                              [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCGAAAAATGTTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGAAATGGTGTCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAAATGCGCACAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGCAGACAGGAAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAGGAGATAAACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAA]

[+] EMBL BX619604             [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX625928             [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX602656             [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX602736             [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM602535             [                                                                                                      ccgTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCGAAAAATG                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX615560             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGTTGGTATATTTAAATCCAAGTCAGACTCGAAAAATGTTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGAAATGGTGTCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAAATGCGCACAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGCAGACAGGAAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAGGAGATAAACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAA]




>consensus_7452#0
GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTG
CTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGC
AATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAAT
ATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCA
TTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGT
GTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCA
CTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGCTAATGTT
GGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGTC
TCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTT
TTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGT
TATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACA
TGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGT
TTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCGAAAAATG
TTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGAAATGGTG
TCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAAATGCGCA
CAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGCAGACAGG
AAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAGGAGATAA
ACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAA

consensusID : consensus_7452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [CCGCGGACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATG]

[+] EMBL BM586042             [CCGCGGACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATG]




>consensus_7452#1
CCGCGGACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGT
GTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTA
GTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTG
TGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGTCTCTG
GACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTT
TTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAGTTATG
GTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAA
CATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7452#0      GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTG 60
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      CTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGC 120
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      AATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAAT 180
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      ATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCA 240
consensus_7452#1      -------------------------------------------------------CCGCG 5
                                                                             ** * 

consensus_7452#0      TTTTCACAC-CTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTG 299
consensus_7452#1      GACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTG 65
                          *     **************************************************

consensus_7452#0      TGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGC 359
consensus_7452#1      TG----------CGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGC 115
                      **          ************************************************

consensus_7452#0      ACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGCTAATGT 419
consensus_7452#1      ACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGT 175
                      ******************************************** ***************

consensus_7452#0      TGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGT 479
consensus_7452#1      TGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGT 235
                      ********************************************* **************

consensus_7452#0      CTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCT 539
consensus_7452#1      CTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCT 295
                      ************************************************************

consensus_7452#0      TTTTTTT------GTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAG 593
consensus_7452#1      TTTTTTTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAG 355
                      *******      ************ ********************** ***********

consensus_7452#0      TTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCC 653
consensus_7452#1      TTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCC 415
                      ************************************************************

consensus_7452#0      TATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGC 713
consensus_7452#1      TATAACATG--------------------------------------------------- 424
                      *********                                                   

consensus_7452#0      TTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCG 773
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      AAAAATGTTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGA 833
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      AATGGTGTCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAA 893
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      ATGCGCACAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGC 953
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      AGACAGGAAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAG 1013
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      GAGATAAACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGA 1073
consensus_7452#1      ------------------------------------------------------------
                                                                                  

consensus_7452#0      A 1074
consensus_7452#1      -