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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1318 fasta sequence
[CCGGCACACACACTCTTTTTTTAATTCTGTATCCAAAAAGCAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGAAACGGGACACCAAAATTCAGCCGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTACACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCTTCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGACAGCGCGTGGCCGCACACTACCAAATCAGGTGCTAATTATGGTTTCCACTGTCAAGGAGCGATTATGCCAAGGGATTATAGCAGGGCGAGGGTTGCAAAACAAAGCGCGCTCCTCGCTGGGGTGGGAAAAGCGCCTAAAAATCGTTCCGTGGTTTGGTAACGTGCGACAGTGTGTCCGGTGTAGAGCTGAGGTGCGCGCTGCCGAAGCATGTTCAGAAGCATTGGAATATTTTATTTTTCCCTTTGGTAGTGCGATAGAATTTTGCTTCATTGTTAAAAATAGCCGTACAATCAGGAACGCCCCGCGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGCAGGCATACCCGTTGTCGGTTTGAGTATGCGAGTTCAATTTTGCGTGCATGTGTGTCAATTTTGAGGCAAGCGTGTGGGTGCATCAATTCTCAACCAGGATATTGATACGCTACGATGCATCAATTATCCTTGTGATGCACCGACTGTGCGCTGTGGCTTTCCACGAACACCAAAACACACCCGCCATCCGTGCCAACTTGGATCTTTCTTTTCTGCAACGTGTACACACGCGTGTGACAGAGAGGGAAGAGGTTTGTTTTGATGCGGCAAACGTCACTTCAAACGATCGCCCCAAAAAGGGGTTTGGGGGGTATGAGCGCGTGAATAAGGGTGATTTTTATTTTGACCCGGCCTCTAGCCTGTACTGCATGATGCTAAGGTCATTTAAAGGCGTTATGCAGTACATGCATGAACAATTTAATACTCCATCATGTCCGCACAAAACAGATAAAAATGCTATCGTAATTATTTGCTTCAAAATGACCGTTATCAAAGCCATTTAAATGTTAGTTTAGCTAAACTAATGCCTTCGCTTTTCTAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGAC]
[+] EMBL BM586696 [CCGGCACACACACTCTTTTTTTAATTCTGTATCCAAAAAGCAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGAAACGGGACACCAAAATTCAGCCGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTACACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCTTCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGACAGCGCGTGGCCGCACACTACCAAATCAGGTGCTAATTATGGTTTCCACTGTCAAGGAGCGATTATGCCAAGGGATTATAGCAGGGCGAGGGTTGCAAAACAAAGCGCGCTCCTCGCTGGGGTGGGAAAAGCGCCTAAAAATCGTTCCGTGGTTTGGTAACGTGCGACAGTGTGTCCGGTGTAGAGCTGAGGTGCGCGCTGCCGAAGCATGTTCAGAAGCATTGGAATATTTTATTTTTCCCTTTGGTAGTGCGATAGAATTTTGCTTCATTGTTAAAAATAGCCGTACAATCAGGAACGCCCCGCGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGC ]
[+] EMBL BM579686 [ ccgATCAGGAACGCCCCGCGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGCAGGCATACCCGTTGTCGGTTTGAGTATGCGAGTTCAATTTTGCGTGCATGTGTGTCAATTTTGAGGCAAGCGTGTGGGTGCATCAATTCTCAACCAGGATATTGATACGCTACGATGCATCAATTATCCTTGTGATGCACCGACTGTGCGCTGTGGCTTTCCACGAACACCAAAACACACCCGCCATCCGTGCCAACTTGGATCTTTCTTTTCTGCAACGTGTACACACGCGTGTGACAGAGAGGGAAGAGGTTTGTTTTGATGCGGCAAACGTCACTTCAAACGATCGCCCCAAAAAGGGGTTTGGGGGGTATGAGCGCGTGAATAAGGGTGATTTTTATTTTGACCCGGCCTCTAGCCTGTACTGCATGATGCTAAGGTCATTTAAAGGCGTTATGCAGTACATGCATGAACAATTTAATACTCCATCATGTCCGCACAAAACAGATAAAAATGCTATCGTAATTATTTGCTTCAAAATGACCGTTATCAAAGCCATTTAAATGTTAGTTTAGCTAAACTAATGCCTTCGCTTTTCTAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGAC]
consensusID : consensus_7454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 743 fasta sequence
[CCGCCCACGCGTCCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT-AGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACGATACCGACA]
[+] EMBL BM608207 [CCGCCCACGCGTCCGCGAACACACACGCACACAC TTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGGAACAGGACACCAAAAGTCTGCCGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT AGCACGATCGGGTTCGTGCCGCTGCTCTAC ]
[+] EMBL BM575651 [CCGCCCACGCGTCCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAA ]
[+] EMBL BM592342 [ CCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATTAAGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGA ]
[+] EMBL BM586109 [ ccgGCAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT AGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACGATACCGACA]
[+] EMBL BM634045 [ ccgAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGCCGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAATCACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACGACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGCATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCGCGTGGCCGCACACTACCAAATCAGCGCCCTCAACAAATCCCGATTAAAGTACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATACTGGACCGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAGATACCGCCCCCGCTCTGGTGGGAATACTTCTGGTGCCTGTCCGTGTTTCTCTCCTTCATCGGGCTGGCGGCGGTGCGCGGCAACCGCGTGAACGATATGAAAAAGTACATGGTTGGCATT AGCACGATCGGGTTCGTGCCGCTGCTCTACTGCATCTTCTACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7454#0 -------------------CCGGCACACACACTCTTTTTTT-AATTCTGTATCCAAAAAG 40
consensus_7454#1 CCGCCCACGCGTCCGCGCACACACACGCACACACTTTTTTTTAATTCGGTATCCAAAAAG 60
* *** ***** ******** ***** ************
consensus_7454#0 CAGTGAAAGCGCTTTTGGTGGCTTCAGTGGTGTGCAAGAAACGGGACACCAAAATTCAGC 100
consensus_7454#1 CAGTGAAAGCGCCTTTGGTGGCTTCAGTGGTGTGCAAGAAACAGGACACCAAAAGTCTGC 120
************ ***************************** *********** ** **
consensus_7454#0 CGCCCCCGGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAAT 160
consensus_7454#1 CGCCCCCAGGAACCTGTTGGAGGACCATACGGTACCAGGAGCCAAGCGAGCGACCGAAAT 180
******* ****************************************************
consensus_7454#0 CACTCCGACGATTGCAGTACACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACG 220
consensus_7454#1 CACTCCGACGATTGCAGTGCACCGGGTGGCCCGTTGTGTGCACGGCAAAAAGTACTAACG 240
****************** *****************************************
consensus_7454#0 ACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGC 280
consensus_7454#1 ACTCCGAGTTAGTGAGAAGCATCCCGCCGCCCTTCCCTTCCCGCCAGCAAACGCGATGGC 300
************************************************************
consensus_7454#0 TTCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGACAGCG 340
consensus_7454#1 ATCCCGTGGCGGACCGATGGTGCTCGGGACAGATGGAACCGACTTCGAGCACAGGCAGCG 360
***************************************************** *****
consensus_7454#0 CGTGGCCGCACACTACCAAATCAGGTGCTAATTATGGTTTCCACTGTCAAGGAGCGATTA 400
consensus_7454#1 CGTGGCCGCACACTACCAAATCAG-CGCCCTCAACAAATCCCGAT-TAAAGTACTGCATC 418
************************ ** * * ** * * *** * * *
consensus_7454#0 TGCCAAGGGATTATAGCAGGGCGAGGGTTGCAAAACAAAGCGCGCTCCTCGCTGGGGTGG 460
consensus_7454#1 TTCTT-----CCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGACATAC 473
* * * * * * * * * * ** *** * *
consensus_7454#0 GAAAAGCGCCTAAAAATCGTTCCGTGGTTTGGTAACGTGCGACAGTGTGTCCGGTGTAGA 520
consensus_7454#1 TGGAC-CGGCTCGACATCTTCATACTGGAAATCGAGGAGCTGCAG-ATA-CCGCCCCCGC 530
* ** ** * *** * * * * ** *** * *** *
consensus_7454#0 GCTGAGGTGCGCGCTGCCGAAGCATGTTCAGAAGCATTGGAATATTTTATTTTTCCCTTT 580
consensus_7454#1 TCTGGTGGGAATACTTCTGGTGCCTGTCCG------------TGTTTCTCTCCTTCATCG 578
*** * * ** * * ** *** * * *** * * * *
consensus_7454#0 GGTAGTGCGATAGAATTTTGCTTCATTGTTAAAAATAGCCGTACAATCAGGAACGCCCCG 640
consensus_7454#1 GGCTG-GCGGCGGTGCGCGGCAACCGCGTGAACGATA---------TGAAAAA------G 622
** * *** * ** * ** ** *** * * ** *
consensus_7454#0 CGAGCGGTTTGCGAGTGAGAGAGAAAGAGCGAGCAGGCATACCCGTTGTCGGTTTGAGTA 700
consensus_7454#1 TACATGGTTGGCATTAGCACGATCGGGTTCGTGCCGCTGC-TCTACTGCATCTTC----- 676
**** ** * ** * ** ** * * ** **
consensus_7454#0 TGCGAGTTCAATTTTGCGTGCATGTGTGTCAATTTTGAGGCAAGCGTGTGGGTGCATCAA 760
consensus_7454#1 TACTACCTGAACGATGTGCTCGAGTATCTCAACCTGGAGGAAGGTACCGAACTAGACGA- 735
* * * * ** ** * * ** * **** * **** * * * * *
consensus_7454#0 TTCTCAACCAGGATATTGATACGCTACGATGCATCAATTATCCTTGTGATGCACCGACTG 820
consensus_7454#1 -TACCGACA--------------------------------------------------- 743
* * **
consensus_7454#0 TGCGCTGTGGCTTTCCACGAACACCAAAACACACCCGCCATCCGTGCCAACTTGGATCTT 880
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TCTTTTCTGCAACGTGTACACACGCGTGTGACAGAGAGGGAAGAGGTTTGTTTTGATGCG 940
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 GCAAACGTCACTTCAAACGATCGCCCCAAAAAGGGGTTTGGGGGGTATGAGCGCGTGAAT 1000
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 AAGGGTGATTTTTATTTTGACCCGGCCTCTAGCCTGTACTGCATGATGCTAAGGTCATTT 1060
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 AAAGGCGTTATGCAGTACATGCATGAACAATTTAATACTCCATCATGTCCGCACAAAACA 1120
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 GATAAAAATGCTATCGTAATTATTTGCTTCAAAATGACCGTTATCAAAGCCATTTAAATG 1180
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TTAGTTTAGCTAAACTAATGCCTTCGCTTTTCTAGCGCCCTCAACAAATCCCGATTAAAG 1240
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 TACTGCATCTTCTTCCACTATCTGCTGTTCTTCGTGATGCTCGTCAAACTGTCCGCCGAC 1300
consensus_7454#1 ------------------------------------------------------------
consensus_7454#0 ATACTGGACCGGCTCGAC 1318
consensus_7454#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||