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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1239 fasta sequence
[GTTTTGGTTTTTTGGGGATTTTAAATGGAATACGCGTCACGCGAAACGATAGCCGCAACAACCCTGCACACTCAATGAGCAATGAGGGTTATTTTTTGTTTCTTGTTTTCTTTTGATTGGCTTGCCTTCCCCCCCCCCCCCAACGGCGCTCTCCCCTGTTGCGCTGTCGGGGACGTTCCTCTCTCTCTCTCTTTCTTGGTGTTATGAATTGGTCAAATTGTGTGATTTTTTTTTGTTGCTATTTTTCCGTATCAACATTTACAAGAACATATA--TTTTTTGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGGGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAAGG-GAAAAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAAA-AAACAAACCCCCCCCGAAAATCATGTGGGAAAACGACAAAAATCAAATCAGCAGAAGCAACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGG-CCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGGCACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAACGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGAATCCATCTCGGCGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCGGAGCTGTGATGATT---ACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTGCTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTG-CTTC-GGTACCACCACCGCCGCCGGCCGACGCCGGCCCGCCCTCGACCACATGCACGCCTCGCTCA]
[+] EMBL CNS08I7E [GTTTTGGTTTTTTGGGGATTTTAAATGGAATACGCGTCACGCGAAACGATAGCCGCAACAACCCTGCACACTCAATGAGCAATGAGGGTTATTTTTTGTTTCTTGTTTTCTTTTGATTGGCTTGCCTTCCCCCCCCCCCCCAACGGCGCTCTCCCCTGTTGCGCTGTCGGGGACGTTCCTCTCTCTCTCTCTTTCTTGGTGTTATGAATTGGTCAAATTGTGTGATTTTTTTTTGTTGCTATTTTTCCGTATCAACATTTACAAGAACATATATTTTTTTTGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGAGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAGGGAAAAAAAATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAt ]
[+] EMBL CNS09PWV [ TATCAACATTTACAAGAACATATA TTTTTTGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGGGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAAGG GAAAAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAAA AAACAAACCCCCCCCGAAAATCATGTGGGAAAACGACAAAAATCAAATCAGCAGAAGCAACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGG CCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCACCACTGCTGTTCGTCACTCCACCGAGCGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGACACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAACGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTTCGGAATCCATCTCGGCGGCTCCTCCGGC ]
[-] EMBL BM628055 [ TATCAACATTTACAAGAACATACA TTTTTAGCGTCGAATCAAATGATAAACAAATGTAGAATTATTCGTAAGATGTAAATCGCGCACGTTTCATTGTGCTTGGCGAAGAACGCAAGGGTTCCGATCAACGCCATCCGCACAAACAAACAGAACAAAAGG GAAAAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAAATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAATATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAAACAAACAAAACCCCCCCGAAAATCATGTGGGAAAACAACAAAAATCAAATCAGCAGAAGCAACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGG CCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGGCACACGCGAACCGCCcgg ]
[-] EMBL BM654766 [ ACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGGCCCAGCGCCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCTCATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCGTGGATGTAGCAATCCCGGCACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAGCGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGAATCCATCTCGGTGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCGGAGCTGTGATGATT ACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTGCTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTGCCTTCGGGTACCACCACCGCCGCCGGCCGACGCCGG ]
[-] EMBL CNS09PWU [ GCCTTGGTCAAACCATATTTTGGCAACGGTTTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTTCTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGAATCCATCTCGGCGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCGGAGCTGTGATGATTACCACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTGCTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTG CTTC GGTACCACCACCGCCGCCGGCCGACGCTTTCCCGCCCTCGACCACATGCACGCCTCGCTCA]
consensusID : consensus_7475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 808 fasta sequence
[CCGCACCACCATCATCATCATTCCTATGCCGAATCGGCCGAGGGTACCAGCTCGGTTGTCAGCACTATTACCACCAGCAACAACAGCACATCGAACGGAAGCACCCGCCACCACAGTCGAATGCAGCAGCAGCAGCACCAGCAGCAGCGCAATTCATCCTCCAGCTGTGATACATCACCGACGCAGAGCGAATGCAGTGATGCGCAGGAGGTGGCGCTCGCCATCCGAGCGGCTGGACGAAATAAATTCAAATCAACGGAAAACCTGCTGCACCGTCTGTTCGTGTGCATTGCCGGCGTGGCCGATCAGCTGCAGACGAACTTTGCCGCCGATCTGAGGAAGATGCTGCGAAGCGTGTTCATCATGAACTCGTCCCCGCCCGAGCCGGACGAGCCACCGGAGCCGAGCGGCAGCGAGGAGGAGTCGAAGGACAGCCAGCACAACCACCCGTCCGATCTGTTC-GAGTTCCGGGCCAGCGAGCAGGACGTCATCACGGCCGACCAGCAGAACCACAGCGGCGGCTCCAGCCAAAGCATCTACTCGGCCGAGGAGAGCGAACCCCGAGCAGGATTCGGTGTTCGGATTCGTCGGGCGATTCGTCCCCGGTGCGCCGCAGGCCAGCGTCGAGAGCCGGAACGTGACGGTGAACGTGTCCGTGTCGGTGGTGGCTTCCTCGCCCGTCGGTGCGGGCGGACAGGTGGAGGGGGTATGGTCGGGGGCAGCCGGACGGGGCAGGAGCGGAGTGGGAGTCTGAGCGAGGCGTGCATCGTGGTCGAGGGCGGGAAAGCGTCGGCCGGACAGCGGCGTC]
[+] EMBL BM615061 [CCGCACCACCATCATCATCATTCCTATGCCGAATCGGCCGAGGGTACCAGCTCGGTTGTCAGCACTATTACCACCAGCAACAACAGCACATCGAACGGAAGCACCCGCCACCACAGTCGAATGCAGCAGCAGCAGCACCAGCAGCAGCGCAATTCATCCTCCAGCTGTGATACATCACCGACGCAGAGCGAATGCAGTGATGCGCAGGAGGTGGCGCTCGCCATCCGAGCGGCTGGACGAAATAAATTCAAATCAACGGAAAACCTGCTGCACCGTCTGTTCGTGTGCATTGCCGGCGTGGCCGATCAGCTGCAGACGAACTTTGCCGCCGATCTGAGGAAGATGCTGCGAAGCGTGTTCATCATGAACTCGTCCCCGCCCGAGCCGGACGAGCCACCGGAGCCGAGCGGCAGCGAGGAGGAGTCGAAGGACAGCCAGCACAACCACCCGTCCGATCTGTTC GAGTTCCGGGCCAGCGAGCAGGACGTCATCACGGCCGACCAGCAGAACCACAGCGGCGGCTCCAGCC ]
[+] EMBL CNS08I7D [ GTCGAAGGACAGCTAGCACAACAACCAGTCCGATCTGTTCAGAGTTCCGGGCCAGCGAGCAGGACGTCATCACGGCCGACCAGCAGAACCACAGCGGCGGCTCCAGCCAAAGCATCTACTCGGCCGAGGAGAGCGAACCCCGAGCAGGATTCGGTGTTCGGATTCGTCGGGCGATTCGTCCCCGGTGCGCCGCAGGCCAGCGTCGAGAGCCGGAACGTGACGGTGAACGTGTCCGTGTCGGTGGTGGCTTCCTCGCCCGTCGGTGCGGGCGGACAGGTGGAGGGGGTATGGTCGGGGGCAGCCGGACGGGGCAGGAGCGGAGTGGGAGTCTGAGCGAGGCGTGCATCGTGGTCGAGGGCGGGAAAGCGTCGGCCGGACAGCGGCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7475#0 GTTTTGGTTTTTTGGGGATTTTAAATGGAATACGCGTCACGCGAAACGATAGCCGCAACA 60
consensus_7475#1 ------------------------------------------------------------
consensus_7475#0 ACCCTGCACACTCAATGAGCAATGAGGGTTATTTTTTGTTTCTTGTTTTCTTTTGATTGG 120
consensus_7475#1 ------------------------------------------------------------
consensus_7475#0 CTTGCCTTCCCCCCCCCCCCCAACGGCGCTCTCCCCTGTTGCGCTGTCGGGGACGTTCCT 180
consensus_7475#1 ----------------------------------------------------CCGCACCA 8
** **
consensus_7475#0 CTCTCTCTCTCTTTCTTGGTGTTATGAATTGGTCAAAT-TGTGTGATTTTTTTTTGTTGC 239
consensus_7475#1 CCATCATCATCATTCCTA---TGCCGAATCGGCCGAGGGTACCAGCTCGGTTGTCAGCAC 65
* ** ** *** * * **** ** * * * * * ** * *
consensus_7475#0 TATTTTTCC--GTATCAACATTTACAAGAACATATATTTTTTGCGTCG-AATCAAATGAT 296
consensus_7475#1 TATTACCACCAGCAACAACAGCACATCGAACGGAAGCACCCGCCACCACAGTCGAATG-- 123
**** * * * ***** **** * * * * ** ****
consensus_7475#0 AAACAAATGTAGAATTATTCGTAAGATG-TAAATCGCGCACGTTTCAT-TGTGCTTGGCG 354
consensus_7475#1 CAGCAGCAGCAGCACCAGCAGCAGCGCAATTCATCCTCCAGCTGTGATACATCACCGACG 183
* ** * ** * * * * * *** ** * * ** * * **
consensus_7475#0 AAGAACGCA---AGGGTTCCGATCAACGCCATCCACACAAACAAACAGAACAAAAGGGAA 411
consensus_7475#1 CAGAGCGAATGCAGTGATGCGCAGGAGGTGGCGCTCGCCATCCGAGCGG-CTGGACGAAA 242
*** ** * ** * * ** * * * * * * * * * * * * **
consensus_7475#0 AAGATGTAAAATAAACAAAGCACAAATCGCTCACAAGGTGCGTGTACTGTACATGGTCAA 471
consensus_7475#1 TAAAT-TCAAATCAACGGAAAACCTGCTGCACCGTCTGTTCGTGTGCATTGCCGGCGTGG 301
* ** * **** *** * ** ** * ** ***** * * * *
consensus_7475#0 ATGATGAAAGTATATCACAAATGGTTTGAGTAAACAAAATCAAAATAACTGCATCAAAAT 531
consensus_7475#1 CCGATCAG------CTGCAGACGAACTTTGCCGCCGATCTGAGGA-AGATGCTGCGAAGC 354
*** * ** * * * * * * * * * * *** * **
consensus_7475#0 ATCTGAAACATAAACGTATAGCTTCCGCTCGTCAAAAGTACGCAGTGTCAAGCTGGTGAA 591
consensus_7475#1 GTGTTCATCATGAAC---TCGTCCCCGCCCG--AGCCGGACGAGCCACCGGAGCCGAGCG 409
* * * *** *** * * **** ** * * *** * * *
consensus_7475#0 AAAACAAACCCCCCCCGAAAATCATGTGGGAAAACGACAAAAATCAAATCAGCAGAAGCA 651
consensus_7475#1 GCAGCGAGGAGGAGTCGAAGGACAGCCAGCACAAC--CACCCGTCCGATCTGTTCGAGTT 467
* * * **** ** * * *** ** ** *** * **
consensus_7475#0 ACAACCTAAAAGAAAGCCTCAGCCAACCCGACACTCCTAACGGGCCCCCCGGGGCCAGCG 711
consensus_7475#1 CCGGGCCAGCGAGCAGGAC--GTCATCACGGC-CGACCAGCAGAACCACAGCGGC-GGCT 523
* * * ** * ** * ** * * * * * * ** * * *** **
consensus_7475#0 CCTAATAAAGCGCACAGCACTCGGCGGAAAGGAGTTTCTGCTATAGCTGGGCGGCATTCT 771
consensus_7475#1 CCAGCCAAAGCATCTA---CTCGGCCGAGGAGAG------CGAACCCCGAGCAGGATTCG 574
** ***** * ****** ** *** * * * * ** * ****
consensus_7475#0 -CATCCAAACCCGCCACTGCTGCTCGTCACTCCACCGAACGCTATTACACTCCCACCTCG 830
consensus_7475#1 GTGTTCGGATTCGTCGG-GCGATTCGTC----CCCGGTGCGCC---GCAGGCCAGCGTCG 626
* * * ** * ** ***** * * * *** ** ** * ***
consensus_7475#0 TGGATGTAGCAATCCCGGCACACGCGAACCGCCTTGGTCAAACCATATTTTGGCAACGGT 890
consensus_7475#1 AGAGCCGGAACGTGACGGTGAACGTGT-CCGTGTCGGTGGTGGCTTCCTCGCCCGTCGGT 685
* * *** *** * *** * *** * * * * ****
consensus_7475#0 TTGGACAGGTTCGAGCACACGCCGCAAAACACGCCGCCACAGTTGCGGCAATGGTGCCTT 950
consensus_7475#1 GCGGGCGGA--CAGGTGGAGGGGGTATGGT---CGGGGGCAGCCG----GACGGGGCA-- 734
** * * * * * * * * * * *** * * ** **
consensus_7475#0 CTGCGGAACGGTGTAAAGGCCGACGCGCAGGCCATGCACCGCGGCGCATCGCAGTCCGGA 1010
consensus_7475#1 ----GGAGCGGAGTGGGAGTC--TGAGCGAGGCGTGCATCGTGG----TCGAGGGCGGGA 784
*** *** ** * * * ** * * **** ** ** *** * * ***
consensus_7475#0 ATCCATCTCGGCGGCTCCTCCGGCATCCGTCGCTGCTGCTCGTGCGCCGTGTGATGGGCG 1070
consensus_7475#1 AAGCGTCG-GCCGGA--CAGCGGCGTC--------------------------------- 808
* * ** * *** * **** **
consensus_7475#0 GAGCTGTGATGATTACCACCACCACCACCAGTATTGCTGTTGACGGGACTGCTCGGGCTG 1130
consensus_7475#1 ------------------------------------------------------------
consensus_7475#0 CTGCGGCTGCGGCCGTAGTCATTTTTGGACCCGCTGGCACTGTGCTTCGGTACCACCACC 1190
consensus_7475#1 ------------------------------------------------------------
consensus_7475#0 GCCGCCGGCCGACGCCGGCCCGCCCTCGACCACATGCACGCCTCGCTCA 1239
consensus_7475#1 -------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||