|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1683 fasta sequence
[TAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGAAACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCG---C-CTCTCTCTGTCTCTATTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCCTAATTTCGAATTCTAACAGCTTCGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGAAGGAAGAACAGGGGGAAGCTCAGTACGTTCAATGGTTAACACAACTATTTAAAAAAAACACGGTGGTAAATGGTCGCCGCCAGAGGGGACACACCGGAGAGGGGCAGCATCAGCGCATGGTGTGTGGTCGAAACACAGCGGCGGACACGCGAAAAACGCGCGCGATGGCACACAGACCTGGATATTCTCCTTCCTTCTCTCTCTCTCTGTATTGCTTCAAATTGACACACCTGGCAGATGATCCTGCTGTAGTAGTGGGTAGTAGTAGTGGGGGGCTTGTACTGTTGAGATCATATGCTGTTGATGCGCTGCCGCCGCCGTCGTTGTTGCTGCTGCTGCTGGGCGTTCCCTTCCTCGCCGTTTTCTCCCGACACACCACCTCCTTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATCGGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGA------CTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGACAGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGT---TGCTGCTGCTGCTGCTGCTGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCCGTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGCTTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCTCCCCCGGCGCGGCCATTTTGTACTGCGAGATGGTGCGAATGGATAGCGGCG]
[+] EMBL BM596134 [TAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGAAACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTCTCTCTCTCTGTCTCTATTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCCTAATTTCGAATTCTAACAGCTTCGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGA ]
[+] EMBL AGA282229 [ TCTAATGATCAATTTTCAGCTCCTTACGATCGTGTGTAAACTGTACAAGATACAACCTAAACCG C CTCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTGTCTCTCTCACTCGCGCTACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCCTAATTTCGAATTCTAACAGCTTCGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGTAGGAAGAACAGGGGGAAGCTCAGTACGTTCAATGGTTAACACAACTATTTAAAAAAAACACGGTGGTAAATGGTCGCCGCCAGAGGGGACACACCGGAGAGGGGCAGCATCAGCGCATGGTGTGTGGTCGAAACACAGCGGCGGACACGCGAAAAAC ]
[-] EMBL BM586563 [ ATCAGCGCATGGTGTGTGGTCGAAACACAGCGGCGGACACACGAAAAACGCGCGCGATGGCACACAGACCTGGATATTCTCCTTCCTTCTCTCTCTCTCTGTATTGCTTCAAATTGACACACCTGGCAGATGATCCTGCTGTAGTAGTGGGTAGTAGTAGTGGGGGGCTTGTACTGTTGAGATCATATGCTGTTGATGCGCTGCCGCCGCCGTCGTTGTTGCTGCTGCTGCTGGGCGTTCCCTTCCTCGCCGTTTTCTCCCGACACACCACCTCCTTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATCGGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGACTGCTGCTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTACTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATG CGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCgg ]
[-] EMBL AL932920 [ TTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATCGGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGA CTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTC GCCGCTNCCGCAATCGCTGCCCCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGTTTGCTGCTGATCGTGTGCAGCGACTGCGAG TGATCGACA GGGCGTGGGCGA GAC GA GCG ACCAGCTTCCGACTGT NNCTGg ]
[-] EMBL BM627898 [ GCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATGCTGTGGTGATGCTGCTGCGA CTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTATCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTGCTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGACGACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGGTGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGACAGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGTTGCTGCTGCTGCTGCTGCTGCTGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCCGTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGCTTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCTCCCCCGGCGCGG ]
[-] EMBL AGA280527 [ GGGCTTCGCCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGCTGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGACAGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGT TGCTGCTGCTGCTGCTGCTGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCCGTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGCTTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCTCCCCCGGCGGCCCCATTTTGTACTGCGAGATGGTGCGAATGGATAGCGGCG]
consensusID : consensus_7494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[ATCTGTACAAAGGTGAGTTGTGTGTGTGTGTGTGTGCCAATGGTGCATGAGTGTGCATGTGTGCGCGTATGTGTGTGTGTGCTCCCTAATAATTGGGGAAGGGGGAGGGAGAAAACACAAAAGGTGCTCTTTTTAAAAACGAGTATATAAAAAAAAAAACAAACAAACATCGAGTTCAATATACAGGAGTTAATCACTAGTTTGTTTTATATGCATAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCTAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGACACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTCTCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCAC]
[-] EMBL BM632131 [ATCTGTACAAAGGTGAGTTGTGTGTGTGTGTGTGTGCCAATGGTGCATGAGTGTGCATGTGTGCGCGTATGTGTGTGTGTGCTCCCTAATAATTGGGGAAGGGGGAGGGAGAAAACACAAAAGGTGCTCTTTTTAAAAACGAGTATATAAAAAAAAAAACAAACAAACATCGAGTTCAATATACAGGAGTTAATCACTAGTTTGTTTTATATGCATAATTGCTTCCCTTCTATGTGTTTGTGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCTAAAATTTCAAACTTCATTTTTCAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTTCGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAACAAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTGTCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGACACGGTGCCCTTCTTTTCTAATGATCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTCTCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCGCGCTACTCAGTCAACATGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7494#0 ------------------------------------------------------------
consensus_7494#1 ATCTGTACAAAGGTGAGTTGTGTGTGTGTGTGTGTGCCAATGGTGCATGAGTGTGCATGT 60
consensus_7494#0 ------------------------------------------------------------
consensus_7494#1 GTGCGCGTATGTGTGTGTGTGCTCCCTAATAATTGGGGAAGGGGGAGGGAGAAAACACAA 120
consensus_7494#0 ------------------------------------------------------------
consensus_7494#1 AAGGTGCTCTTTTTAAAAACGAGTATATAAAAAAAAAAACAAACAAACATCGAGTTCAAT 180
consensus_7494#0 -----------------------------------TAATTGCTTCCCTTCTATGTGTTTG 25
consensus_7494#1 ATACAGGAGTTAATCACTAGTTTGTTTTATATGCATAATTGCTTCCCTTCTATGTGTTTG 240
*************************
consensus_7494#0 TGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTC-AAAATTTCAAACTTCATTTTT 84
consensus_7494#1 TGAGTGAGTGTGTAGAATAGTCGTGTGATACAGAGCTCTAAAATTTCAAACTTCATTTTT 300
************************************** *********************
consensus_7494#0 CAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTT 144
consensus_7494#1 CAACCCCTTTTAGTTTTGTTTAGCACTTTGTCGGTTTGTTTTTCCTTTTTGTTGCTTCTT 360
************************************************************
consensus_7494#0 CGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAAC 204
consensus_7494#1 CGCTTTCCCACAACCCGCTTCTTAAACTCTGAACAGTGATTTAAAAACAAAACGTAGAAC 420
************************************************************
consensus_7494#0 AAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCT---------G 255
consensus_7494#1 AAAAATCAGATTGGCACATATAAGTAAGGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTG 480
************************************************** *
consensus_7494#0 TCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGAAACGGTGCCCTTCTTTTCTAATGA 315
consensus_7494#1 TCGCTCAGAAAGCTTTCTCCCGCGGGTGATTAGTGACACGGTGCCCTTCTTTTCTAATGA 540
************************************ ***********************
consensus_7494#0 TCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGCCTC 375
consensus_7494#1 TCAATTTTCAGCTCCTTATGATCGTGTGTAAACTGTACAAGATACAACCTAAACCGTCTC 600
******************************************************** ***
consensus_7494#0 TCTCT--GTCTCTATTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCACTCGCGCT 433
consensus_7494#1 TCTCTCTGTCTCTCTTTTCGCACGCTCTCGCTCACTCTCTCTCTCTCTCTCTCTCTCTCT 660
***** ****** ************************************* *** * **
consensus_7494#0 ACTCAGTCAACATGCACTCTCTTTGTTGTTCTAATCC-TAATTTCGAATTCTAACAGCTT 492
consensus_7494#1 -CTCTCTC-----TCTCTCTCTCACTCGCGCTACTCAGTCAACATGCAC----------- 703
*** ** * ****** * * *** ** * * * *
consensus_7494#0 CGCCGTTTGTCAATTGTTAAGCGGATATACGCCATGGGGCGGATAAAAGGGAAAGGGAAG 552
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GAAGAACAGGGGGAAGCTCAGTACGTTCAATGGTTAACACAACTATTTAAAAAAAACACG 612
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GTGGTAAATGGTCGCCGCCAGAGGGGACACACCGGAGAGGGGCAGCATCAGCGCATGGTG 672
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TGTGGTCGAAACACAGCGGCGGACACGCGAAAAACGCGCGCGATGGCACACAGACCTGGA 732
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TATTCTCCTTCCTTCTCTCTCTCTCTGTATTGCTTCAAATTGACACACCTGGCAGATGAT 792
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 CCTGCTGTAGTAGTGGGTAGTAGTAGTGGGGGGCTTGTACTGTTGAGATCATATGCTGTT 852
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GATGCGCTGCCGCCGCCGTCGTTGTTGCTGCTGCTGCTGGGCGTTCCCTTCCTCGCCGTT 912
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TTCTCCCGACACACCACCTCCTTGTGAGCGCTCCCCTCCTCTGCTTACTTGTAGTACATC 972
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GGCTCGGATTTGCTCAGATCCGTCGGCATCATGCTGTCGTCGTCGCTTTTCACGTGCATG 1032
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 CTGTGGTGATGCTGCTGCGACTGGTGCGCGGACGACTCACTGTTGGCGGGCGAGGGCGTA 1092
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TCACGGTCGCGATCGTGCGGTTCCCGGTGGTCGTGGTCGCTCGCACCGCTCGTGCTGCTG 1152
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 CTTCGGCTACCGTTCCGTGCCGGGTGGTGGTGGTGTTGGTGCTGGTGATGCGACGACGAC 1212
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GACGACGACGACTGGTGGTGAAGGGGATGGTCCTGCTGCTGCTCCGCGGCGTCCTGCTGG 1272
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TGGCGGGCTTCGGCCGCTGCCGCAATCGCTGCCGCAGCCGCTGCCTGCGCCTGAAGCTGC 1332
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TGCTGGTGCAGATGGTGCAGGTTGCTGCTGATCGTGTGCAGCGACTGCGAGTTGATCGAC 1392
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 AGGGGCGTTGGCGAGGACGGAGGCGAACCAGCTTCCGACTGTTGCTGCTGCTGCTGCTGC 1452
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TGCCTCAGCAGTTGAATCGTTGTCAGTCCGTTGGCATTGCGAATCAGTGGGTAGCAGTCC 1512
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 GTTCCGTTGACGGGCGATCCGTAGCTAAACTTGCGATCGTTCGTGCTGAGATCGGTCGGC 1572
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 TTGAGGTCGTCCAGGTCGGTTTCCATCTTGATGTTGCGCTGGTGCGGCCCGCCGCCCGCT 1632
consensus_7494#1 ------------------------------------------------------------
consensus_7494#0 CCCCCGGCGCGGCCATTTTGTACTGCGAGATGGTGCGAATGGATAGCGGCG 1683
consensus_7494#1 ---------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||