|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1308 fasta sequence
[TACGCGGCTTTTACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGAAAGATCCGTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCTACCAACACGATCCACTCGAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTCAACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTTTTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAACG-CGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCATCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTATCTGGAAAACTATCGCCACGATCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTTCGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATATGCTACGGCGTATTGCTCGAGTGTTGGCGCATGCTGTGGCTCCTGGTGGAGGTCACGCTACAACTCAATGAA]
[+] EMBL CNS093GR [TACGCGGCTTTTACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGAAAGATCCGTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGA ]
[+] EMBL BX622342 [ AGATCCGTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCTACCAACACGATCCACTCGAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTCAACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTTTTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAACG CGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCATCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTATCTGGAAAACTATCGCCACGATCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTTCGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATATGCTACGGCGTATTGCTCGAGTGTTGGCGCATGCTGTGGCTCCTGGTGGAGGTCACGCTACAACTCAATGAA]
[+] EMBL BX626434 [ CCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGATCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACGGATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACATTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCTACCAACACGATCCACTCNAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTCAACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTTTTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAACGCCGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCATCGAACCGGTNAATTT ]
[-] EMBL CNS09QGN [ GATTTGGGACACATTTCGGCAGTCCATCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTTTCTGGAAAACTATCGCCACGATCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTTCGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATATGCTACGGCGTATTGCTCGAGTGTTGGCGC ]
consensusID : consensus_7495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 707 fasta sequence
[CCGCGTACGATGAGCAACCAGATTGTAGCAAGCATCTGCTTCGTGTGCTGATCGTTCGAGGGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGC-GGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTT-GAAAGATCCG-TTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTAT]
[+] EMBL BM593330 [CCGCGTACGATGAGCAACCAGATTGTAGCAAGCATCTGCTTCGTGTGCTGATCGTTCGAGGGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGC GGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTT GAAAGATCCG TTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGG ]
[+] EMBL CNS09QGM [ ATCTGCTTCGTGTGCTGATCGTTCGAGGGACACACCTTCAGCCAACGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGGAAAGATCCGTTTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATC ]
[+] EMBL BX602046 [ TGTGCTGATCGTTCGAGGGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTACGCTGAACACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCAGTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATCCTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATCCTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGGATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGC GGCTATGCCTGCCGCAATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCAGTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAACTGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTT GAAAGATCCG TTGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTGGTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7495#0 ------------------------------------------------------------
consensus_7495#1 CCGCGTACGATGAGCAACCAGATTGTAGCAAGCATCTGCTTCGTGTGCTGATCGTTCGAG 60
consensus_7495#0 -----------------------TACGCGGCTTTTACAGATGCAACGACAGCCCGGATTA 37
consensus_7495#1 GGACACACCTTCAGCCACCGATTTACACCATGTGGACAGATGCAACGACAGCCCGGATTA 120
*** * * *************************
consensus_7495#0 CGCTGAATACGATCCGATTTGTGGTGTTGGTTTGTTTCCTGTTGCCATTTTTCTTCGCCA 97
consensus_7495#1 CGCTGAATACGATCCGATTTGTGGTGTTGGTCTGTTTCCTGTTGCCATTTTTCTTCGCCA 180
******************************* ****************************
consensus_7495#0 GTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATC 157
consensus_7495#1 GTTATGCAACGGTTGCGCTCTCCCGTCAGCTGTGGCTGATTATCTTGTGCTGGCGCTATC 240
************************************************************
consensus_7495#0 CTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATC 217
consensus_7495#1 CTTGGTTGAAGCGAACCAATGTACATGGGATCAAAAGCTTCGTCGATCGGACCCGCAATC 300
************************************************************
consensus_7495#0 CTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGG 277
consensus_7495#1 CTGAGGTGCTGTGTGTGCTAATGGAGATGGAAGGTGAAATTGATGTTGTACAGCTGCGGG 360
************************************************************
consensus_7495#0 ATGAATTTTTGCACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGC 337
consensus_7495#1 ATGAATTTTTACACCACATTCGCGATTGCAGCAGCAGCCATATGCGGCTATGCCTGCCGC 420
********** *************************************************
consensus_7495#0 AATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCA 397
consensus_7495#1 AATTTATTTTACCCTTTATGTCTTGCTGGAACAAGTATCCGTGGCTGAAGGGAACCAGCA 480
************************************************************
consensus_7495#0 GTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAAC 457
consensus_7495#1 GTGCCGACGAACACATAGTATTGGCCCCAGCCATACAGCGAGGACGTCCAATAAAAGAAC 540
************************************************************
consensus_7495#0 TGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGAAAGCTTGAAAGATCCGT 517
consensus_7495#1 TGATGTGTTTGTTAAACATCGCTACCACAACTGCCGGCAGCGCAAGCTTGAAAGATCCGT 600
****************************************** *****************
consensus_7495#0 TGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTG 577
consensus_7495#1 TGATAACAAATGCTAAACCCGCTGCTCTTCACTGGCAAATCGTTTGCATTCCGGTAATTG 660
************************************************************
consensus_7495#0 GTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTATCTGTTGTATGCGA 637
consensus_7495#1 GTGAATCGGCCCCGGACTGCAACGACCGTTGCGTCACCTCGCACTAT------------- 707
***********************************************
consensus_7495#0 TCGATCTACAGCTTTTGAATGAGACAGAGAAACGCAACCTAAGCTACATCCCCTTTAACG 697
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 GATACCTCGAACGAGGCGAACAACCAATGGTTGACAATGTACTGGCGAAACCTTACTACA 757
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 TTCCGCGCCTGTGGAACTATATTTTCTCGACCATACATTACCGCTGGAACGAGTTTGTCT 817
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 ACCAACACGATCCACTCGAATCGCCGGACATAGACCGCAAGCAGTACACAGGAATGGGTC 877
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 AACTACTGTCTGCGCTGTTCATTTCCATCGTGTACGTTTGCGGAGACTTTGTGTGCTCTT 937
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 TTCGGTCCATCAAAGGAAGTCCTTTGGATAAAATAGATTATCTTCAACGGTTGATTGAAC 997
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 GCGAGATCGACAAGCGCAATCTTACGATACGAACGATTTGGGACACATTTCGGCAGTCCA 1057
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 TCGAACCGGTCAATTTGGCGAAAGAGGTTACGTTTTTTATCTGGAAAACTATCGCCACGA 1117
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 TCACGCTCATGGTCCCGTGGTACGGATGGAAGGAAACGGAAGCGTTGTTATTGTACCTTT 1177
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 CGAAAGGGACGATCAATAGTGATACGATGGTAGGATTCATCGTTGAATGCACTCCCATAT 1237
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 GCTACGGCGTATTGCTCGAGTGTTGGCGCATGCTGTGGCTCCTGGTGGAGGTCACGCTAC 1297
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 AACTCAATGAA 1308
consensus_7495#1 -----------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||