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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 957 fasta sequence
[CCGTAATCACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCG-CCCAAGTA-TACGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT-GGTCCCG-CTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGTGTTCAGTACTGCAATACAGCCCTTGTATNACCTGAAAGTGGATCAGCAAATCAACAACAGTGGGAAAGTACCGGCATTTCAAGTGGCATGGACCAAAAGACGGACGAAGACGAGCATAGCATCGAAATGCATCTTCCCTA]
[+] EMBL BM577775 [CCGTAATCACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACTTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCG CCCAAGTA TACGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT GGTCCCG ]
[+] EMBL BM576967 [ ccgACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCGTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCG CCCGAGTA TTCGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAAC GCTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGGTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGGTCCCG CTCGTGCCATTATCGCTCCGCACGCCGGATATCGCT ]
[+] EMBL BX625978 [ ATCCAAGTTTTTACAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCACAGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGCAGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTGCGGAAAAAATACTCCAAGCGCCCCGAGTATTCCGTGTGAAAAAGCGTGGAAAGCTTAAAAT ]
[+] EMBL BM585993 [ ccgAGCAGGGTGAAAGATCATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCG CCCAAGTA TACGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGACAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT GGTCCCG CTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTG ]
[+] EMBL AL694766 [ cccgaggtAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGG CACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTT GGTCCCGACTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGTGTTCAGTACTGCAATACAGCCCTTGTATNACCTGAAAGTGGATCAGCAAATCAACAACAGTGGGAAAGTACCGGCATTTCAAGTGGCATGGACCAAAAGACGGACGAAGACGAGCATAGCATCGAAATGCATCTTCCCTA]
consensusID : consensus_7504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[GCAGATTCGGCACGATGGAAAGCAGCAGCTTCTTTAAAAAACCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGCTGTTCAGTACTGCAATACGCCCTTGTATAACCTGAAAGTGGATCAGAAATCAACCAACAGCTGGAAAGTACCCGGGCCATTTTCAAGTGGGATGGAGCCAAAAGACGGACGAAGACGANGCATAGCATCGAAATGCATCTTCCCTACGTGGCTTAAAGTGATGGGAAGGACTATAAAGATCAGGTTTACCATCGGTACCGGGTGATAGGTTGGCTCCCATTACCCCAATGAAATTGGGCAAGAGAACCTATGGGNAAAAATCTTTTCTGCACCCGGTACCCTTGTCGTTGACCCCACAGGAATTTGTTNCGGCAAAATTTCGGTCCGGAAGTTTTTGCCACCTGAGGGCCAAACGAGTTTTCGCTTACAACCATTAACCTAACGAAGGAAAAGGGTCCCGGNTCCGGATGCTTACCAAATGGGATTCGGAAAACGCTNGNCCAAAATCGGGCGATGGNATTTTG]
[+] EMBL BX467815 [GCAGATTCGGCACGATGGAAAGCAGCAGCTTCTTTAAAAAACCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAACGTGTGTTCATTTTGGGCCCTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGCTGTTCAGTACTGCAATACGCCCTTGTATAACCTGAAAGTGGATCAGAAATCAACCAACAGCTGGAAAGTACCCGGGCCATTTTCAAGTGGGATGGAGCCAAAAGACGGACGAAGACGANGCATAGCATCGAAATGCATCTTCCCTACGTGGCTTAAAGTGATGGGAAGGACTATAAAGATCAGGTTTACCATCGGTACCGGGTGATAGGTTGGCTCCCATTACCCCAATGAAATTGGGCAAGAGAACCTATGGGNAAAAATCTTTTCTGCACCCGGTACCCTTGTCGTTGACCCCACAGGAATTTGTTNCGGCAAAATTTCGGTCCGGAAGTTTTTGCCACCTGAGGGCCAAACGAGTTTTCGCTTACAACCATTAACCTAACGAAGGAAAAGGGTCCCGGNTCCGGATGCTTACCAAATGGGATTCGGAAAACGCTNGNCCAAAATCGGGCGATGGNATTTTG]
consensusID : consensus_7504#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[CCGCGGACGCGTGGGAAGATCGTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCGCCCGAGTATTCGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGCTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTACTGTGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAAACGTGTGTTCATTTTTGGGGCCCTTCGCA]
[+] EMBL BM608918 [CCGCGGACGCGTGGGAAGATCGTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCGCCCGAGTATTCGTGTGAAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGGTAGTTCCAACGCTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGCCAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGCTCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCTCCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATTCAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTGGTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTACTGTGGTGCCTGCGGTGCTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAAACGTGTGTTCATTTTTGGGGCCCTTCGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7504#0 CCGTAATCACAGTTTTATGCTTTTTGCTGCTGTTTCTGTTTGCAATAATCCAAGTTTTTA 60
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 CAAATATTTCGGAATGTATAGAAAAATCTACTGCTAGCAGCTAGCAACACCTGCGCGCAC 120
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 AGTGCTGATTCGAAAACGGTACCAGCTCACACTGAATTTTGACTGCTCCTTCCCTGCCGC 180
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 AGCCCTTCCGTCCTCTATCCCTTGAGTCTTGCTTTGTTCGACAAAGCAGGGTGAAAGATC 240
consensus_7504#2 -------------------------------------CCGCGGACGCGTGG--GAAGATC 21
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 ATCGACAAATCGTCAAAAGTTTTACGGAAAAAATACTCCAAGCGCCCAAGTATACGTGTG 300
consensus_7504#2 GTCGACAAATCGTCAAAGGCTTTACGGAAACAATACTCCAAGCGCCCGAGTATTCGTGTG 81
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 AAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGG 360
consensus_7504#2 AAAAAGCGTGGAAAGCTTAAAATATCAACCTCAGATTGCTGCATTCGGTGATAAATTAGG 141
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 TAGTTCCAACGTGCTTAACTCAGTGTTGGAAGACAATCGTAATCCACAGCCAACCAAAGC 420
consensus_7504#2 TAGTTCCAACG--CTTAACTCAGTGTTGGAAGACAATCGTAATCGACAGCCAACCAAAGC 199
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 CAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGC 480
consensus_7504#2 CAGTGTGCGTGTGTGCCATTTGAAAAGTCACTTTCACTTTGTTTGACCGAGAAAGTGTGC 259
consensus_7504#1 ------------------------------------------------------------
consensus_7504#0 TCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCT 540
consensus_7504#2 TCCGGAACGTTTGTACGGGGTGTGACACAACGAAAAGCAGCAGCTTCTTTAAAAAACCCT 319
consensus_7504#1 ---------------GCAGATTCGGCACGATGGAAAGCAGCAGCTTCTTTAAAAAACC-T 44
* * * *** * * ************************* *
consensus_7504#0 CCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATT 600
consensus_7504#2 CCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATT 379
consensus_7504#1 CCTTCAAAATGCCAAATTCGAATCGTTTGGCCACGCATGCTGGTAGCTGGTACACGGATT 104
************************************************************
consensus_7504#0 CAGGAGCTGAATTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTG 660
consensus_7504#2 CAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTG 439
consensus_7504#1 CAGGAGCTGAGTTGAACCGTCAGCTGAATGGCTGGTTGAACGATGCAGATCTCACCTTTG 164
********** *************************************************
consensus_7504#0 GTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTG 720
consensus_7504#2 GTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTACTGTGGTGCCTGCGGTG 499
consensus_7504#1 GTCCCGCTCGTGCCATTATCGCTCCGCACGCCGGATATCGCTATTGCGGTGCCTGCGGTG 224
******************************************* ** *************
consensus_7504#0 CTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAA-CGTGTGTTCATTTT--GGGCC 777
consensus_7504#2 CTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAAACGTGTGTTCATTTTTGGGGCC 559
consensus_7504#1 CTTGGGCTTATCGGCAAATTAGTCCCGCCGTGGTAAAA-CGTGTGTTCATTTT--GGGCC 281
************************************** ************** *****
consensus_7504#0 CTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGG-TGTTCAGTACTGCAATACAG 836
consensus_7504#2 CTTCGCA----------------------------------------------------- 566
consensus_7504#1 CTTCGCATCATGTGCGTCTGTCCCGTTGCGCCCTATCGGCTGTTCAGTACTGCAATAC-G 340
*******
consensus_7504#0 CCCTTGTATNACCTGAAAGTGGATCAGCAAATCAACAACAGTGGGAAAGTACCGGCA--- 893
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 CCCTTGTATAACCTGAAAGTGGATCAGAAATCAACCAACAGCTGGAAAGTACCCGGGCCA 400
consensus_7504#0 -TTTCAAGTGGCATGGA-CCAAAAGACGGACGAAGACGAG-CATAGCATCGAAATGCATC 950
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 TTTTCAAGTGGGATGGAGCCAAAAGACGGACGAAGACGANGCATAGCATCGAAATGCATC 460
consensus_7504#0 TTCCCTA----------------------------------------------------- 957
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 TTCCCTACGTGGCTTAAAGTGATGGGAAGGACTATAAAGATCAGGTTTACCATCGGTACC 520
consensus_7504#0 ------------------------------------------------------------
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 GGGTGATAGGTTGGCTCCCATTACCCCAATGAAATTGGGCAAGAGAACCTATGGGNAAAA 580
consensus_7504#0 ------------------------------------------------------------
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 ATCTTTTCTGCACCCGGTACCCTTGTCGTTGACCCCACAGGAATTTGTTNCGGCAAAATT 640
consensus_7504#0 ------------------------------------------------------------
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 TCGGTCCGGAAGTTTTTGCCACCTGAGGGCCAAACGAGTTTTCGCTTACAACCATTAACC 700
consensus_7504#0 ------------------------------------------------------------
consensus_7504#2 ------------------------------------------------------------
consensus_7504#1 TAACGAAGGAAAAGGGTCCCGGNTCCGGATGCTTACCAAATGGGATTCGGAAAACGCTNG 760
consensus_7504#0 -------------------------
consensus_7504#2 -------------------------
consensus_7504#1 NCCAAAATCGGGCGATGGNATTTTG 785
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||