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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1331 fasta sequence
[CCGGGAGCTGCTGCTGGCGCACTACGGCGAAGATCACTTCGATCGCACGGATTGCCACGGTACGCTGATGATGCTGACCCGCTCGACCGAGGTGATTAGGCGCGAGCTGACGGCGTCGGAAAACCACAGCCTGCTGTGCGAAATCCAGCGCGACATCGACGGGTACGATGGGCTGGTGCAGCCGGACCGGAAGCTGATCCGGCAGGGCTGCCTACTGAAGCATTCCAAGCGCGGGCTGCAGCAGCGCATGTTCTTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGACGCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGAGCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCACGGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAAACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC-TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG-TTTACTGTAAGTGTGTGACAGCTATTTTTATGTAAAACAATCCAAGATACTA-NAAAAAT----CCCCTTNCCCC-TATCCTAAACTGATCAGACCGTTCCCTCCGTCGTTCCGCTT]
[+] EMBL BM642423 [CCGGGAGCTGCTGCTGGCGCACTACGGCGAAGATCACTTCGATCGCACGGATTGCCACGGTACGCTGATGATGCTGACCCGCTCGACCGAGGTGATTAGGCGCGAGCTGACGGCGTCGGAAAACCACAGCCTGCTGTGCGAAATCCAGCGCGACATCGACGGGTACGATGGGCTGGTGCAGCCGGACCGGAAGCTGATCCGGCAGGGCTGCCTACTGAAGCATTCCAAGCGCGGGCTGCAGCAGCGCATGTTCTTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGACGCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGAGCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCACGGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAAACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGA ]
[+] EMBL BM590675 [ ccgTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGACGCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGAGCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCACGGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAAACCCCAGACCCAGCTGCCCATCGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGACTGAGCAGTGCCCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGCTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACA ]
[+] EMBL BX621905 [ CAAACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCTGGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCNATCGTATTCGTTTTACTGNAAGTGNGTGACAGCTATTTTTATGTAAAACAATCCAAGATACTA NAAAAAT CCCCTTNCCCC TATCCTAAACTG ]
[+] EMBL BM579785 [ ccgGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG TTTACTGTAAGTGTGTGACAGCTATT ]
[+] EMBL BM641113 [ ccgGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCC TTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG TTTACTGT ]
[+] EMBL BM614342 [ ccgCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGCTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCACACGTACAATCGGTGGATGGAGGTGTTGCGTAGCGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGTAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGGCGCACGCATTTCCCCCTTTGTGTATGTGCCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCG TTTACTGTAAGTGTGTGAAAGCTATTTTTATGTAAAACAATCCAAGATACTAGAAAAAATCCACCCCCTCCCCCCTTATCCTTATCTGATCAGACCGTTCCCTCCGTCGTTCCGCTT]
consensusID : consensus_7509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[TCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTA]
[+] EMBL BX618779 [TCGCCTCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGATCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAGCTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAGCTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCCCGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACACCTACTTCTTCCGCGCAGAGAGTGAGCAACTCGAACAATCTAATCAACAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACCGTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTGTCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATTGATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7509#0 CCGGGAGCTGCTGCTGGCGCACTACGGCGAAGATCACTTCGATCGCACGGATTGCCACGG 60
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 TACGCTGATGATGCTGACCCGCTCGACCGAGGTGATTAGGCGCGAGCTGACGGCGTCGGA 120
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 AAACCACAGCCTGCTGTGCGAAATCCAGCGCGACATCGACGGGTACGATGGGCTGGTGCA 180
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 GCCGGACCGGAAGCTGATCCGGCAGGGCTGCCTACTGAAGCATTCCAAGCGCGGGCTGCA 240
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 GCAGCGCATGTTCTTCCTGTTCTCCGACGTGCTGCTGTACGCGGTAAAGTCCCCGGTGAC 300
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 GCAGACGTTCAAGGTGCTCGGCCACGTGCCGGTCCGTTCGCTGCTGACGGAGAATGCGGA 360
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 GCACAACGCGTTTGTGATATTTGGCGGGCAGCGGGCAATCACCGTGAGTGCGGGCACCAC 420
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 GGTCGAGAAGACGCTCTGGCTGGAGGAGCTGGCGAAGGCGGCCAACAGTCTGAAGTACAA 480
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 ACCCCAGACCCAGCTGCCCATTGTGTCGATCAAAACATGCACATCGTCTGAGGAAAATCT 540
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 GGAAGCTTGCGGATTGAGCAGTGCGCTTGTGCCACCGGCCGCAGCCAGGCAGCCATCGCC 600
consensus_7509#1 -------------------------------------------------------TCGCC 5
*****
consensus_7509#0 TCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGA 660
consensus_7509#1 TCGCAACAACACGGCCCTGCACGTGTGTTGGCATCGTGGCGTCACGATCTGTCTCGACGA 65
************************************************************
consensus_7509#0 TCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAG 720
consensus_7509#1 TCATCTTCGCTCGGGAAGGAATCAAATTTCGGGCTACTTGCTGCGAAAGTTTAAAAACAG 125
************************************************************
consensus_7509#0 CTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAG 780
consensus_7509#1 CTCCGGGTGGCAGAAGCTGTGGGTCGTGCTGACATCGTTCTGTCTGTACTTCTACAAGAG 185
************************************************************
consensus_7509#0 CTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCC 840
consensus_7509#1 CTACTCGGACGATGCGGCCCTTGCCAGCTTGCCGCTGCTCGGGTACACGGTAGGGCCTCC 245
************************************************************
consensus_7509#0 CGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACAC 900
consensus_7509#1 CGGCATTCAGGATGCGGTGCAGAAGGAGTACGTCTTTAAGCTTTCGTTCAAAAACCACAC 305
************************************************************
consensus_7509#0 CTACTTCTTCCGCGCAGAGAGTGAGCACACATACAATCGGTGGATGGAGGTGTTGCGTAG 960
consensus_7509#1 CTACTTCTTCCGCGCAGAGAGTGAGCA--------------------------------- 332
***************************
consensus_7509#0 CGCCACTCAAATTCAGGAATCCCGCTCATCGCCCACAATCAACTCGAACAATCTAATCAA 1020
consensus_7509#1 -----------------------------------------ACTCGAACAATCTAATCAA 351
*******************
consensus_7509#0 CAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACC 1080
consensus_7509#1 CAATAACGGTAGCAACGGAAACTAAGCAAACGAAGGCCATCGAAACAAGTAGTAGTGACC 411
************************************************************
consensus_7509#0 GTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTG 1140
consensus_7509#1 GTGAGCAAGGCGGAAAAGCTTCGACGGAGCTGCCGCACGCATTTCCCCCTTGTGTATGTG 471
************************************************************
consensus_7509#0 TCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATT 1200
consensus_7509#1 TCCTCTAAAGCGTTTTTTACATCTGCAACACGCAAAGTGCATCCTTTAAACCGTACAATT 531
************************************************************
consensus_7509#0 GATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTATGTAAAACAA 1260
consensus_7509#1 GATATGATCAATCGTATTCGTTTACTGTAAGTGTGTGACAGCTATTTTTA---------- 581
**************************************************
consensus_7509#0 TCCAAGATACTANAAAAATCCCCTTNCCCCTATCCTAAACTGATCAGACCGTTCCCTCCG 1320
consensus_7509#1 ------------------------------------------------------------
consensus_7509#0 TCGTTCCGCTT 1331
consensus_7509#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||