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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1265 fasta sequence
[CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT-TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA-TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG-GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT-GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA-GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGTTGTGA]
[+] EMBL CNS08E55 [ GTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGA CTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTAC ]
[+] EMBL BM629176 [ccgGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTT TCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCATCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCT ]
[+] EMBL BX619508 [ TAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTGTCCTCGCCGGAGTGGTTAAATGATGATTATTTTCGGCACGTTTTGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCA TTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGG GTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAAT GGCAGCACTAATGCGANACATTGGTGAGGAGTATCAATATCCCAAATNGGTGTTCGCATCTCACGTGCCTCACACGATNATTATTCTGGAGGATGTGAGCTCACAGGGGATNGACAATGGA ]
[+] EMBL CNS08MNV [ GAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGCGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTATTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGGCAGCAC ]
[-] EMBL CNS08E56 [ AAGTGCTGCCTCAAAT GGCAGCACTAATGCGAAACATTGGTGAGGAGTATCAATATCCCAAATTGGTGTTCGCCTCTCACGTGCCTCACACGATAATTATTCTGGAGGATGTGAGCTCACA GGGATGGACAATGGAAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTTCCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAATCTAGAAGTTGTGA]
[-] EMBL CNS08MNW [ CAATTGCCAAGTTCCATGCGGCCTCTGTCGTACTACAAGGGAAGGGTCCTACCTTTGCGTCCAAAAAACAGTGCACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATTTATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTTTCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAATGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAAAATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGATTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTTAAAAACGCTCATCGTGATGAGATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGGCCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACTCTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGAAGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAACGATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAAT AATCTAGAAGTTt ]
consensusID : consensus_7581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTGGCAAGGGTTGA]
[+] EMBL BX469715 [TCNAGGCAGAATCGCACGAGAATNTGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGAACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTGCAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGATCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATGGTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAGCGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTCACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTGGCAAGGGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7581#0 CGTGTTATAAGGTGCGTCCGTTCAAACGATGCAGTTCAATCACGATGAACTTTCCTCGCC 60
consensus_7581#1 ---------------------------------------TCNAGGCAGAAT---CGCACG 18
** * * * * * *
consensus_7581#0 GGAGTGGTTAAATGATGATTATTTTCGGCACGTTTT-GTGTAAGATAGAATGTGATTCGA 119
consensus_7581#1 AGAATN------TGATGATTATTTTCGGCACGTTTNCGTGTAAGATAGAATGTGATTCGA 72
** * *********************** ***********************
consensus_7581#0 ACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTG 179
consensus_7581#1 ACGCTCGTCTCATCGGTGCGTGTGTGCTCCGACCGGGTACCAAAGCTGGCGATCATTTTG 132
************************************************************
consensus_7581#0 CAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGA 239
consensus_7581#1 CAAGCGTTATGTACCGAACGACATTACAATACTATTGCACCGCGAACGTGAAGAAAACGA 192
************************************************************
consensus_7581#0 TCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATG 299
consensus_7581#1 TCAATCTCATCATGAAGATTAAGCCGGACACAGACGGGTTCAAGAAAGATCTGCTTGATG 252
************************************************************
consensus_7581#0 GTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAG 359
consensus_7581#1 GTGATGATTTTTTTGGCAAAGAAATCCGGATGTACACGGAAGTGCTGCCTCAAATGGCAG 312
************************************************************
consensus_7581#0 C-ACTAATGCGAAACATTGGTGAGGAGTATCAAT-ATCCCAAATTGGTGTTCGCA-TCTC 416
consensus_7581#1 CGACTAATGCGAAACATTGGTGAGGAGTATCAATGATCCCAAATTGGTGTTCGCAGTCTC 372
* ******************************** ******************** ****
consensus_7581#0 ACGTGCCTCACACGAT--AATTATTC-TGGAGGATGTGAGCTCACAGGGATGGACAA-TG 472
consensus_7581#1 ACGTGCCTCACACGAGTAAGTTATTCGTGGAGGATGTGAGCTCACAGGGATGGACAAGTG 432
*************** * ****** ****************************** **
consensus_7581#0 G-AAGGGTTGATAAAAAGTTTTTCCGAATTGGAGCCAACTATAGATGCAATTGCCAAGTT 531
consensus_7581#1 GCAAGGGTTGA------------------------------------------------- 443
* *********
consensus_7581#0 CCATGCAGCCTCTGTCGTACTACAAGAGAAGGATCCTACCTTTGCGTCCCAGTATCAGTG 591
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 CACCATTGCGAAAATATTATGCTCGATGCGAGGCATGACGGACGGCTGTTTTCGTTCATT 651
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 TATCTCCTTTCTTAGTGAGACGGCGGAGCTTCAAGAGTTTGTCGCCCCGGTAGAACATTT 711
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 TCACGCCAAGATCGATGACGTTTTGCAAGCGGCATATGCACCTAGTGAAACATTTGCCAA 771
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 TGTGTTGATACACGGTGATTTTCATTTTAAAAATTTGCTTCACCTACAGCTTGCTGGCAA 831
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 AATCGTCGATACAATTTTTGTGGACTATCAGATGTGCAGCTGGTGTTCGCCGGTGGTCGA 891
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 TTTGTACTACCTTACCTACATGATACCGGAGCAATCGGTAAAAAACGCTCATCGTGATGA 951
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 GATCATTTATCGTTACCATCAAAAATTTGCCAGTCTGCTTCGACGGTTGAACTATCGTGG 1011
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 CCGTGTTCCGACATTAACTGAGTTGCAGGTTGAGCTGCTAAGGAAAGCAGATTTGGAACT 1071
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 CTACCATTATATCGTGTTTTCTGCCTTCTTGCATACCGATTTATCGAAGGTGGACTCCGA 1131
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 AGCATTCTTTCTGGGACGCACAGACAATCCGGCATTGAAAATGGAAGAGTTTAAAGAAAC 1191
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 GATGAAGATCGAATTAAAGAGATTTCTATACCATGGTATAATAGAAAATTAGAGAATAAA 1251
consensus_7581#1 ------------------------------------------------------------
consensus_7581#0 TCTAGAAGTTGTGA 1265
consensus_7581#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||