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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1307 fasta sequence
[CCGGCATCTCAGTGTATGCGTAATATATAACGAAGTGTGCATATGTGTTATCCATATTGCTTAAAACGAACTCTATTCCCCACCCACCACCACAACACCTGTCGAAGAAACGGACGAGCTGGACCAGCAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCCGACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGC-AGGGTGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATT-GTGT----GTAGAGGTACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACTGGAACTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGCCGGCACA--GTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGACA-GGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAACATTACGGGCACCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTAGGAAAGGGGTAAGGGCAATAGAAGTTGTTTAGAAATATATTTATACCAATAGCGGGTAGTAGTTGTGTGAAGTGAAAGCTGCTAGAATTAACGAATGTTCGAGCCGGAATGTCCGGGCTGTGTGGTGTGGTGTGTGTGTGTGGTGG]
[+] EMBL BM585339 [CCGGCATCTCAGTGTATGCGTAATATATAACGAAGTGTGCATATGTGTTATCCATATTGCTTAAAACGAACTCTATTCCCCACCCACCACCACAACACCTGTCGAAGAAACGGACGAGCTGGACCAGCAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCCGACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGC AGGGTGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATTGGTGT GTAGAGGTACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACTGGAACTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGA ]
[+] EMBL BX616371 [ CAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCCGACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGG TG CACACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGCAAGGGGGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGAGTGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGTGTTGCTAGGTGTGTGCTATATT GTGTACCACTA AAGTACGACCAGCGAGTCAAATCTGTCTC ]
[+] EMBL BM633083 [ ccgGGACGGCGTCGGAGGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATGAGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAAGGGAACAGAGAACATGATGAGTAGAGTTGGATGGC AGGGTGTTGGTGGTACATTGTTGGTGATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGATCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATT GTGT GTAGAGGTACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACT GAACTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGCCGGCACA GTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGACAGGGAGGACGGTGGTCGCACTAGA ]
[+] EMBL BX609930 [ CTAGGTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAAAGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGCCGGCACAGTGTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGACA GGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAACATTACGGGCACCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGA ]
[-] EMBL AGA282811 [ TATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTAGGAAAGGGGTAAGGGCAATAGAAGTTGTTTAGAAATATATTTATACCAATAGCGGGTAGTAGTTGTGTGAAGTGAAAGCTGCTAGAATTAACGAATGTTCGAGCCGGAATGTCCGGGCTGTGTGGTGTGGTGTGTGTGTGTGGTGG]
consensusID : consensus_7583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[TTTTTTTTAAATAGCAATTGGAATTTAATGAAACGAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTANGAAA]
[+] EMBL AGA281187 [TTTTTTTTAAATAGCAATTGGAATTTAATGAAACGAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAATTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGAGGAACAATGCGTCCTACAACTANGAAA]
consensusID : consensus_7583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGACAATAGTCTCTAACTCTGTGTACAGACAGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGAGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCG]
[+] EMBL BM599608 [CCGCGGACGCGTGGGCGGACGCGTGGGGACAATAGTCTCTAACTCTGTGTACAGACAGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAAACATTACGGGCATCACAGACAAAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGAGCAGACGTGTACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCAAGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCACCGTACGTTGTAAGAGCAATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7583#0 CCGGCATCTCAGTGTATGCGTAATATATAACGAAGTGTGCATATGTGTTATCCATATTGC 60
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 TTAAAACGAACTCTATTCCCCACCCACCACCACAACACCTGTCGAAGAAACGGACGAGCT 120
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GGACCAGCAGCAGCAGCAGCAGCAACAATCAAGCATCAACAACAATCGTCGCTCGTATCC 180
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GACCACACCGGTGCGTAACCTAACCGTGCCACCGGCGATGGGCCAACGGACGGCGTCGGA 240
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GGACAATCCAAGCCCGCGCGTGACACCAAACTCATCGCCCCGCAAACCGCATCGCGTATG 300
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 AGGGATGTCGGATGTCGAACTATCCCAGCATCATTAGGAAAAACACCATCAGGGAAAAAA 360
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GGGAACAGAGAACATGATGAGTAGAGTTGGATGGCAGGGTGTTGGTGGTACATTGTTGGT 420
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GATGGATATAGAATTAATTGTCGCTACTTGCCAGTGTTCTTTCGTAAGGGAGGAGTGCGA 480
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 TCGAAATGGTTTGGTGCATAGTTTCGCGTTGCTAGGTGTGTGCTATATTGTGTGTAGAGG 540
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 TACGACCAGCGAGGCAAATCTGTCTCGAGGAAAAGAAAACTGAACTGATACTGGAACTAG 600
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GTGTGTCCCATCCATCGAACTACTCAGAACTAAGCTTATGCAAACACTTGAAGAAATTAA 660
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 AGCACTGGTATAAATGAACAGAATTAAACCATTCACTTCTTTGCTCTTACAGCATCAAGC 720
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 CGGCACAGTGTGTGTGTGTCCAGTGGTGGAAGACAATAGTCTCTAACTCTGTGTACAGAC 780
consensus_7583#1 ------------------------------------------------TTTTTTTTAAAT 12
consensus_7583#2 ----CCGCGGACGCGTGGGCGGACGCGTGGGGACAATAGTCTCTAACTCTGTGTACAGAC 56
* * * * *
consensus_7583#0 AGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAA-CATTACGGGCACCACAGACA 839
consensus_7583#1 AGCA-------------ATTGGAATTTAATGAAACGAAA-CATTACGGGCATCACAGACA 58
consensus_7583#2 AGGAGGACGGTGGTCGCACTAGAATTTAATGAAACGAAAACATTACGGGCATCACAGACA 116
** * * * ****************** *********** ********
consensus_7583#0 AAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGT 899
consensus_7583#1 AAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGGGCAGACGTGT 118
consensus_7583#2 AAAAAGCAAGCGCAAAAGCAAGTAAACGATGCTTGTTAGAGTCTTTCGGAGCAGACGTGT 176
************************************************* **********
consensus_7583#0 ACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCA 959
consensus_7583#1 ACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCA 178
consensus_7583#2 ACACACGCGTTACAGTCGCTCCACCAGAAACTAGAAGAGATTGAGTATAGAATTAGCGCA 236
************************************************************
consensus_7583#0 AGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCA 1019
consensus_7583#1 AGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCA 238
consensus_7583#2 AGCGAAAGGAAGACGGACGTCCCTTTTCGAGGGACAGAAGACAGCTAAAAAGACAATGCA 296
************************************************************
consensus_7583#0 CCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAA 1079
consensus_7583#1 CCGTACGTTGTAAGAGCAATCGAACCAAGAGCGGTTTTTACCAAAAAACCACTAGTTAAA 298
consensus_7583#2 CCGTACGTTGTAAGAGCAATCG-------------------------------------- 318
**********************
consensus_7583#0 TTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGA 1139
consensus_7583#1 TTGTAACGAATTCACCCTTCCTGCTGTGTCAGTTGTGCCCGCGCCTCCTTCCTTTCTAGA 358
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 GGAACAATGCGTCCTACAACTAGGAAAGGGGTAAGGGCAATAGAAGTTGTTTAGAAATAT 1199
consensus_7583#1 GGAACAATGCGTCCTACAACTANGAAA--------------------------------- 385
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 ATTTATACCAATAGCGGGTAGTAGTTGTGTGAAGTGAAAGCTGCTAGAATTAACGAATGT 1259
consensus_7583#1 ------------------------------------------------------------
consensus_7583#2 ------------------------------------------------------------
consensus_7583#0 TCGAGCCGGAATGTCCGGGCTGTGTGGTGTGGTGTGTGTGTGTGGTGG 1307
consensus_7583#1 ------------------------------------------------
consensus_7583#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||