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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1001 fasta sequence
[CCGGATAAACCAAAGCACACAAGCGATCGTCACTTTTGTTCTCAAGAGCCTTTCATCGAACGGACACAGCACAATCGAATGCATTGTTCCGGTAGCTCGCCATTGCAGTACGACGAAGCTGAAACACGTTAAGATCGTAAAAAACAGGTGGATTTTGCCCTGCGGATTACGAGCAGCGTGCAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAGCTCCGGTCGCAGCTGTTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTCGAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTCAACGATTGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACGCGAAACCGGCGCAAAAACCACTTCCAGCCGATATGTACTCCTCGTTCGGCTACATCGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACCTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACGACACTGCAACAAATGCCAAAGGATTTTCTCACCAAAGCACCGCCCCCTGGTGCGGTGTTTGCCGTATATCTTGATAATGTCTGGCATCGCGCCATTTGCAATATGCCAGCGGCTGGCAGTGACACGGCAGAACTCTATTTGCTGGATATGGGCGAAACACTT-GCCTACAGTGATCTTCTTCCTAAAGCGAAACTTCCGTCCGACCTGTGTCAGTTGCCGGCGTATGCGATCAAGTGCCAAGTAAGCCATACGGCAACCGCATTGCCACTGAGTCTGTACTACAGTGTGTCCTGTAGTGTGGTTGCGGTTGAAAACGATACTCTGATAGTGGAGCATGCTGAACCTCCGCGCGAAGA]
[+] EMBL BM591930 [CCGGATAAACCAAAGCACACAAGCGATCGTCACTTTTGTTCTCGAGAGCCTTTCATCGAACGGACACAGCACAATCGAATGCATTGTTCCGGTAGCTCGCCATTGCAGTACGACGAAGCTGAAACACGTTAAGATCGTAAAAAACAGGTGGATTTTGCCCTGCGGATTACGAGCAGCGTGCAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAGCTCCGGTCGCAGCTGTTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTCGAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTGAACGATTGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACACGAAACCGGCGCAAAAACCACTTCCAGCCGATACGTACTCCTCGTTCGGCTACATCGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGTACCTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATTAGGAACAGTTTAACGACAC ]
[+] EMBL CNS08YPG [ TAAACCAAAGCACGCAAGCGATCGTCACTTTTGTTCTCAGGAGCCTTTCATCGAACGGACACAGCACAATCGAATGCATTGTTCCGGTAGCTCGCCATTGCAGTACGACGAAGCT CGTT AGGTCGCAAAAAACAGGTGGATTTGGTCCTGCGGATTGCGAGCAGCGTGCAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAGCTCCGGTCGCAGCTATTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTCGAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTCAACGATTGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACGCGAAACCGGCGCAAAAACCACTTCCAGCCGATACGTACTCCTCGTTCGGCTACATCGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGTACCTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACTACACTGCAACAAATGCCAAAGGATTTTCTCACCAAAGCACCGCCCGCTGGTGCGGTGTTTGCCGTATATCTTGATAATGTCTGGCATCGCGCCATTTGCAATATGCCAGCGGCTGGCAGTGACACGGCAGAACTCTATTTGCTGGATATGGGCGAAACACTT GCCTACAGTGATCTTCTTCCTAAAGCGAAACTTCCGTCCGACCTGTGTCAGTTGCCGGCGTATGCGATCAAGTGCCAAGTAAGCCATACGGCAACCGCATTGCCACTGAGTCTGTACTACAGTGTGTCCTGTAGTGTGGTTGCGGTTGAAAACGATACTCTGATAGTGGAGCATGCTGAACCTCCGCGCGAAGA]
[+] EMBL BM597236 [ ccgACCAAAGCACACAAGCGATCATCACTTTTGTTCTCAAGAGCCTTTCATCGAACGGACACAGCACAATCGAATGCATTGTTCCGGTAGCTCGCCATTGCAGTACGACGAAGCTGAAACACGTTAAGATCGTAAAAAACAGGTGGATTTTGCCCTGCGGATTACGAGCAGCGTGCAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAGCTCCGGTCGCAGCTGTTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTCGAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTCAACGATTGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACGCGAAACCGGCGCAAAAACCACTTCCAGCCGATATGTACTCCTCGTTCGGCTACATCGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACCTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACGACACTGCAACAAAT ]
[+] EMBL CNS09ONZ [ TTTCATCGAACGGACACAGCACAATCGAATGCATTGTTACGGTAGCTCGCCATTGCAGTACGACGAAGCTGAAACACGTTAAGATCGTAAAAAACAGGTGGATTTGGTCCTGCGGATTGCGAGCAGCGTGCACACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGAAAGGCAGCTACGGTC ]
[+] EMBL BM656493 [ ccgCGACGAAGCTGAAACACGTTAAGATCGTAAAAAACAGGTGGATTTTGCCCTGCGGATTACGAGCAGCGTGCAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAGCTCCGGTCGCAGCTGTTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTCGAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTCAACGATTGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACGCGAAACCGGCGCAAAAACCACTTCCAGCCGATATGTACTCCTCGTTCGGCTACATCGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACCTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACGACACTGCAACAAATGCCAAAGGATTTTCTCACCAAAGCACCGCCCCCTGGTGCGGTGTTTGCCGTATATCTTGATAATGTCTGGCACCGCGCCATTTGCAATATGCCAGCCGCTGGCAGTGACACGGCAGAGCTCTATTTGCTGGATATGGGCGAAACACTTGGCCTACAGTGAT ]
[+] EMBL BM623358 [ ccgGCTGAAACACGTTAAGATCGTAAAAAACAGGTGGATTTTGCCCTGCGGATTACGAGCAGCGTGCAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTGGAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAGCTCCGGTCGCAGCTGTTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTCGAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTCAACGATTGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACGCGAAACCGGCGCAAAAACCACTTCCAGCCGATATGTACTCCTCGTTCGGCTACATCGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACCTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACGACACTGCAACAAATGCCAAAGGATTTTCTCACCAAAGCACCGCCCCCTGGTGCGGTGTTTGCCGTATATCTTGATAATGTCTGGC ]
consensusID : consensus_7590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence
[CCGAGGTTAATTCCAGCCGATATGTACTCCCTCGTTCGGCTACATCTGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACTGACACTGCAACAAATGCCAAAGGATTTTCTCACCAAAGCACCGGCCCCTGGTGCGGGTGTATAGCGGATATCTTGATAATGTCTGGCACCGTCCATTTGCATATGCAGCCGCTGGCAGTGACACGGGCAGAGCTCTATTATAGCTGGCATATGGGGCGAAACACTNTGACTAACAGGTNNGATNCTTCTTTCCTTANAAGCGGAAAGATTTCCGTACCGACCCTGTGTACAGGTTGCCGGCGTACTTGCGATCAAGTTGCCCAAAGTAAAGCCCCCATTAACGGGCAGCCCGCCATTTGCCCCGGCTGANGTCCTGGTACCTACCCAGCNGTGGTCCCTAGTACAGTGGTANAGTCATGCCGAGGGTATTGCAAAACCGGATAACTCCTGATNAAGTTGGNAAGGACATATTCGCTTGAAAAACCCTACCCGGCGGCGAACACGCACGGTAACCGGCCCCAACTTATCAAGGCCAGGCAAGNACCACCGGCCTCCCAACAGGGTTCCCGCAGAGCAACAACTTNGGCACGCGCAAACATGGNGCCCGAGAAACANTGGCCCGGCTTACACAGCACACNTTACCGACATTCCCNCGATTGGAC]
[+] EMBL AL696023 [CCGAGGTTAATTCCAGCCGATATGTACTCCCTCGTTCGGCTACATCTGCACCAACGCTTGACTATCAAGCTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACTTCTATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACTGACACTGCAACAAATGCCAAAGGATTTTCTCACCAAAGCACCGGCCCCTGGTGCGGGTGTATAGCGGATATCTTGATAATGTCTGGCACCGTCCATTTGCATATGCAGCCGCTGGCAGTGACACGGGCAGAGCTCTATTATAGCTGGCATATGGGGCGAAACACTNTGACTAACAGGTNNGATNCTTCTTTCCTTANAAGCGGAAAGATTTCCGTACCGACCCTGTGTACAGGTTGCCGGCGTACTTGCGATCAAGTTGCCCAAAGTAAAGCCCCCATTAACGGGCAGCCCGCCATTTGCCCCGGCTGANGTCCTGGTACCTACCCAGCNGTGGTCCCTAGTACAGTGGTANAGTCATGCCGAGGGTATTGCAAAACCGGATAACTCCTGATNAAGTTGGNAAGGACATATTCGCTTGAAAAACCCTACCCGGCGGCGAACACGCACGGTAACCGGCCCCAACTTATCAAGGCCAGGCAAGNACCACCGGCCTCCCAACAGGGTTCCCGCAGAGCAACAACTTNGGCACGCGCAAACATGGNGCCCGAGAAACANTGGCCCGGCTTACACAGCACACNTTACCGACATTCCCNCGATTGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7590#0 CCGGATAAACCAAAGCACACAAGCGATCGTCACTTTTGTTCTCAAGAGCCTTTCATCGAA 60
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 CGGACACAGCACAATCGAATGCATTGTTCCGGTAGCTCGCCATTGCAGTACGACGAAGCT 120
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 GAAACACGTTAAGATCGTAAAAAACAGGTGGATTTTGCCCTGCGGATTACGAGCAGCGTG 180
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 CAGACAACAATGGCTTATGGCACGTATGAGCAGCTTTGGGATGTTTCCCACGAATATTTG 240
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 GAGAAACATGTGGCTTTCGTGAATTCTCTGACCAGTTTAATGCTAGAGCGGGCAAGGCAG 300
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 CTCCGGTCGCAGCTGTTTAGTGCTGAGTCGACTAAACGTGACACCTTCGTAGAGGACTTC 360
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 GAGGCAGCCCACGATAAGCTGCAAAGCATGGGCAAATCATTGCAAATCGTCGTCAACGAT 420
consensus_7590#1 ------------------------------------------------------------
consensus_7590#0 TGGAAGCGATTGTTTGCGGATCAATGTTCTGTCTTGGACGCGAAACCGGCGCAAAAACCA 480
consensus_7590#1 ---------------------------------------------------CCGAGGTTA 9
* * *
consensus_7590#0 CTTCCAGCCGATATGTACTCC-TCGTTCGGCTACATC-GCACCAACGCTTGACTATCAAG 538
consensus_7590#1 ATTCCAGCCGATATGTACTCCCTCGTTCGGCTACATCTGCACCAACGCTTGACTATCAAG 69
******************** *************** **********************
consensus_7590#0 CTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCACCTTCT 598
consensus_7590#1 CTGGGCAAAACGTACAGCTGCTTGTCACATACATTCCGTCCCCTGCTGACGGCAC-TTCT 128
******************************************************* ****
consensus_7590#0 ATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAAC-GACACTGCAACAA 657
consensus_7590#1 ATGCGTTGGATGATTCGCGAAAGGATGTCATCAGGAACAGTTTAACTGACACTGCAACAA 188
********************************************** *************
consensus_7590#0 ATGCCAAAGGATTTTCTCACCAAAGCACCGCCCCCTGGTGCGG-TGTTTGCCGTATATCT 716
consensus_7590#1 ATGCCAAAGGATTTTCTCACCAAAGCACCGGCCCCTGGTGCGGGTGTATAGCGGATATCT 248
****************************** ************ *** * ** ******
consensus_7590#0 TGATAATGTCTGGCATCGCGCCATTTGCAATATGCCAGCGGCTGGCAGTGACACGG-CAG 775
consensus_7590#1 TGATAATGTCTGGCACCGT-CCATTTGCA-TATGC-AGCCGCTGGCAGTGACACGGGCAG 305
*************** ** ********* ***** *** **************** ***
consensus_7590#0 AACTCTATTT--GCTGG-ATATGGG-CGAAACACTT--GCCTACAG-TGATCTTCTTCCT 828
consensus_7590#1 AGCTCTATTATAGCTGGCATATGGGGCGAAACACTNTGACTAACAGGTNNGATNCTTCTT 365
* ******* ***** ******* ********* * **** * * **** *
consensus_7590#0 ------AAAGCGAAA---CTTCCGT-CCGACC---TGTGTCAGTTGCCGGCGTA--TGCG 873
consensus_7590#1 TCCTTANAAGCGGAAAGATTTCCGTACCGACCCTGTGTACAGGTTGCCGGCGTACTTGCG 425
***** ** ****** ****** *** ************ ****
consensus_7590#0 ATCAAGT-GCC--AAGTAAGCCATACGGCAACCGCATTGCCACTGAGTCTGTACTACAGT 930
consensus_7590#1 ATCAAGTTGCCCAAAGTAAAGCCCCCATTAACGGGCAGCCCGCC--ATTTGCCCCGGCTG 483
******* *** ****** * * *** * ** * * ** *
consensus_7590#0 GTGTCCTGTAGTGTGGTTGCGGTTGAAAACGATACTCTGATAGTGGAG-CATGCTGAACC 989
consensus_7590#1 ANGTCCTG--GTACCTACCCAGCNGTGGTCCCTAGTACAGTGGTANAGTCATGCCGAGGG 541
****** ** * * * * ** * * ** ** ***** **
consensus_7590#0 TCCGCGCGAAGA------------------------------------------------ 1001
consensus_7590#1 TAT-TGCAAAACCGGATAACTCCTGATNAAGTTGGNAAGGACATATTCGCTTGAAAAACC 600
* ** **
consensus_7590#0 ------------------------------------------------------------
consensus_7590#1 CTACCCGGCGGCGAACACGCACGGTAACCGGCCCCAACTTATCAAGGCCAGGCAAGNACC 660
consensus_7590#0 ------------------------------------------------------------
consensus_7590#1 ACCGGCCTCCCAACAGGGTTCCCGCAGAGCAACAACTTNGGCACGCGCAAACATGGNGCC 720
consensus_7590#0 ---------------------------------------------------------
consensus_7590#1 CGAGAAACANTGGCCCGGCTTACACAGCACACNTTACCGACATTCCCNCGATTGGAC 777
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||