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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 843 fasta sequence
[GATCGGCCCAGGGTTTTNTTCCGC-TG-GTCGCCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCAGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGAGGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCCATGGATCTGGTGACGCAAGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCCGACGCCGGGCCGGCTGGTCGA-CATCTGGAAAACACGAAGGGCTTCAGCCTGAAGGCCATCCGGTACCTGGTGATGGACGAGGCGGACCGCATCCTCAACATGGACTTCGAGGAGGAGGTAAACAAAATCCTCAAGGTGATGCCGCGCGAACGGCGCACCTTCCTGTTCAGCGCCACCATGACGAAGAAGGTGAAAAAGCTCGAGCGC]
[+] EMBL AL934692 [GATCGGCCCAGGGTTTTNTTCCGC TGTGTCGCCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCAGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGAGGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCCATGGATCTGGTGACGCAAGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCCGACGCCGGGCCGGCTGGTCGA CATCTGGA ]
[+] EMBL BM593356 [ ccgcggaCGCGTG GGCGCCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGATTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCAGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTG ]
[+] EMBL BM613677 [ cCGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAAGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGG CATGGATCTGGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAG CGACGCCGGGCCGGCTGGTCGACCATCTGGAAAACACGAAGGGCTTCAGCCTGAAGGCCATCCGGTACCTGGTGATGGACGAGGCGGACCGCATCCTCAACATGGACTTCGAGGAGGAGGTAAACAAAATCCTCAAGGTGATGCCGCGCGAACGGCGCACCTTCCTGTTCAGCGCCACCATGACGAAGAAGGTGAAAAAGCTCGAGCGC]
consensusID : consensus_7614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 736 fasta sequence
[CCGNGGTTAAGTGCACGTTGTTTTCGCTGTGTCGCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTATGTATTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCTGACGTGGAGTGAGTGCAGCAAGGGCTGCAGCAAACGGGTGACTGATTCCTCCGACCAGGAGTGAGAACTGGCTCCGGCACTGGACTGTTGACGAAGAGCAGTGACGGACAGGCGGAAAATGGTACCTGACGTGATGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTACTGCACCTGCCTGCCGTGGGCTGCAAATGGAAAGCACCGTCGAAAATTCAGCTGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTAGGCGGAGACAGGGCTCCGGTAAGACAGGGTGNGTACAGACCCTGACCATCCTGCAGGCCCTGCTCGACAATACCGAGAGCTACTATTAGACGTACNTAGCTAGAAGACNCAGAACNCAGCCAACCTTGACCCTAAACACAGCATATACGGAAACCAGGATTCCGAGGGCNCGGCNNCTGTGNAGCAGGCCTCACAGAATACGAGCTTGTCCACAGNTGNCCTAGAAGCTGAAACTATGGTCCCGAGACGAGGCGAATGGAATNCTTGGTTGAACNGCCACAGCCGNAATCACACGACTACGGCCCCGCCAAACCCGGAACCA]
[+] EMBL AL929948 [CCGNGGTTAAGTGCACGTTGTTTTCGCTGTGTCGCCGGCGTGTTTTTCCCAATTTGCTAGAGAAAAGCTAGTTTTTCTATGTATTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCTGACGTGGAGTGAGTGCAGCAAGGGCTGCAGCAAACGGGTGACTGATTCCTCCGACCAGGAGTGAGAACTGGCTCCGGCACTGGACTGTTGACGAAGAGCAGTGACGGACAGGCGGAAAATGGTACCTGACGTGATGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTACTGCACCTGCCTGCCGTGGGCTGCAAATGGAAAGCACCGTCGAAAATTCAGCTGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTAGGCGGAGACAGGGCTCCGGTAAGACAGGGTGNGTACAGACCCTGACCATCCTGCAGGCCCTGCTCGACAATACCGAGAGCTACTATTAGACGTACNTAGCTAGAAGACNCAGAACNCAGCCAACCTTGACCCTAAACACAGCATATACGGAAACCAGGATTCCGAGGGCNCGGCNNCTGTGNAGCAGGCCTCACAGAATACGAGCTTGTCCACAGNTGNCCTAGAAGCTGAAACTATGGTCCCGAGACGAGGCGAATGGAATNCTTGGTTGAACNGCCACAGCCGNAATCACACGACTACGGCCCCGCCAAACCCGGAACCA]
consensusID : consensus_7614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 681 fasta sequence
[CCGATCAAAGTGCACGTTGTTTTCCGCCCGTCCGGCGTG-TTTTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTCCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCATGGATCT-GGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCGACGCCGGGCCGGCTGGTCGACCATCTGGAAAACACGAAGGGCTTCAG]
[+] EMBL BM602176 [CCGATCAAAGTGCACGTTGTTTTCCGCCCGTCCGGCGTGTTTTTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCTGTGTGCTTTCGGTAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCAACCAGGAGGAGAACGGCTCCGGCACGGACGTTGACGAAGAGCAGGATGGACAGGCGGAAAACGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTGATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCATGGATCT GGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCGACGCCGGGCCGGCTGGTCGACCATCTGGAAAACACGAAGGGCTTCAG]
[+] EMBL BM584372 [CCGATCAAAGTGCACGTTGTTTTCCGCCCGTCCGGCGTG TTCTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGCTTTCAGTGTGCTTCCGGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCTGATGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCGACCAGGAGAAGAACGGCTCCGGCACAGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAGGGCATGGACATTATCGGGCTGGCGGAGACGGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTGCAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTCGGCGGCATGGATCTGGGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCATAGCGACGCCGGGCCGG ]
[+] EMBL BM644406 [ ccgGTTGTTTTCCGCCCGTCCGGCGTG TTTTCCCAATTTGCTGGAGAAAAGCTAGTTTTTCTTGTTTTGTTTTCAGTGTGCTTCCTGCAAAATGTCCAGCTCCGAGAGTGACGGCATGTCCGACGTGGAGGAGGCAGCAAGGGCTGCTGCAAACGGGGACGATTCCTCCGACCAGGAGGAGAACGGCTCCGGCACGGACGGTGACGAAGAGCAGGACGGACAGGCGGAAAATGGTACCGACGTGAGCAAATCGTGGGAAGACTTGGGTCTCATCGACACGCTCTGCACCGCCTGCCGTGGGCTGAAATGGAAAGCACCGTCGAAAATTCAGCGCGAAGCCATCCCGCTCGCCCTGCAAGGCAAGGACATTATCGGGCTGGCGGAGACTGGCTCCGGTAAGACGGGTGCGTTCGCCCTGCCCATCCTACAGGCCCTGCTCGACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAGATATCGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7614#0 ---GATCGGCCCAGG-GTTTTNTTCCGCTGGTCGCCCGGCGTGTTTTTCCCAATTTGCTA 56
consensus_7614#2 -CCGATCAAAGTGCACGTTGTTTTCCGCC---CGTCCGGCGTGTTTT-CCCAATTTGCTG 55
consensus_7614#1 CCGNGGTTAAGTGCACGTTGTTTTC-GCTGTGTCGCCGGCGTGTTTTTCCCAATTTGCTA 59
*** * *** ** ************ ***********
consensus_7614#0 GAGAAAAGCTAGTTTTTCT---TGTTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGC 113
consensus_7614#2 GAGAAAAGCTAGTTTTTCT---TGTTTTGCTTTCAGTGTGCTTCCGGCAAAATGTCCAGC 112
consensus_7614#1 GAGAAAAGCTAGTTTTTCTATGTATTTTGCTTTCAGTGTGCTTTCGGCAAAATGTCCAGC 119
******************* * ******************* ****************
consensus_7614#0 TCCGAGAGTGACGGCATGTCC-GACGTGGAG-GAG-GCAGCAAGGGCTGCAGCAAACGGG 170
consensus_7614#2 TCCGAGAGTGACGGCATGTCC-GACGTGGAG-GAG-GCAGCAAGGGCTGCTGCAAACGGG 169
consensus_7614#1 TCCGAGAGTGACGGCATGTCCTGACGTGGAGTGAGTGCAGCAAGGGCTGCAGCAAACGGG 179
********************* ********* *** ************** *********
consensus_7614#0 -GAC-GATTCCTCCGACCAGGAG-GAGAAC-GGCTCCGGCAC-GGAC-GTTGACGAAGAG 224
consensus_7614#2 -GAC-GATTCCTCCGACCAGGAG-GAGAAC-GGCTCCGGCAC-GGAC-GGTGACGAAGAG 223
consensus_7614#1 TGACTGATTCCTCCGACCAGGAGTGAGAACTGGCTCCGGCACTGGACTGTTGACGAAGAG 239
*** ****************** ****** *********** **** * **********
consensus_7614#0 CAG-GACGGACAGGCGGAAAATGGTACC-GACGTGA-GCAAATCGTGGGAAGACTTGGGT 281
consensus_7614#2 CAG-GACGGACAGGCGGAAAATGGTACC-GACGTGA-GCAAATCGTGGGAAGACTTGGGT 280
consensus_7614#1 CAGTGACGGACAGGCGGAAAATGGTACCTGACGTGATGCAAATCGTGGGAAGACTTGGGT 299
*** ************************ ******* ***********************
consensus_7614#0 CTCATCGACACGCT-CTGCACC-GCCTGCCGTGGGCTG-AAATGGAAAGCACCGTCGAAA 338
consensus_7614#2 CTCATCGACACGCT-CTGCACC-GCCTGCCGTGGGCTG-AAATGGAAAGCACCGTCGAAA 337
consensus_7614#1 CTCATCGACACGCTACTGCACCTGCCTGCCGTGGGCTGCAAATGGAAAGCACCGTCGAAA 359
************** ******* *************** *********************
consensus_7614#0 ATTCAGC-GCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCT-GGCGG 396
consensus_7614#2 ATTCAGC-GCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCT-GGCGG 395
consensus_7614#1 ATTCAGCTGCGAAGCCATCCCGCTCGCCCTGCAGGGCAAGGACATTATCGGGCTAGGCGG 419
******* ********************************************** *****
consensus_7614#0 AGAC-GGGCTCCGGTAAGAC-GGGTGCGTTCG--CCCTGCCCATCCTGCAGGCCCTGCTC 452
consensus_7614#2 AGAC-TGGCTCCGGTAAGAC-GGGTGCGTTCG--CCCTGCCCATCCTACAGGCCCTGCTC 451
consensus_7614#1 AGACAGGGCTCCGGTAAGACAGGGTGNGTACAGACCCTGACCATCCTGCAGGCCCTGCTC 479
**** ************** ***** ** * ***** ******* ************
consensus_7614#0 GACAATCCGCAGCGCTACTTTGCCGTCGTGCTGAGGCCGACGCGCGAACTTGCCTACCAG 512
consensus_7614#2 GACAATCCGCAGCGCTACTTTGCCGTCGTGCTGACGCCGACGCGCGAACTTGCCTACCAG 511
consensus_7614#1 GACAATACCGAGAGCTACTAT-TAGACGTACNTAGCTAGAAG-----ACN-------CAG 526
****** * ** ****** * * *** * * ** * ** ***
consensus_7614#0 ATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTC 572
consensus_7614#2 ATATCGGAACAGTTCGAGGCGCTGGGCGCTACGATCGGTGTCAAGTGCTGCGTGATTGTC 571
consensus_7614#1 AACNCAGCCAACCTTGACCCTAAACACAGCATATACGGAAACCAGGATTCCGAGGGCN-C 585
* * * * * ** * * * *** * ** * ** * *
consensus_7614#0 GGCGGCCATGGATCTGGTGACGCAAGCGATACAGCTCGCCCGCAAACCGCACATCATCAT 632
consensus_7614#2 GGCGGC-ATGGATCTGGTGACGCAGGCGATACAGCTCGCCCGCAAACCGCACATCATCAT 630
consensus_7614#1 GGCNNCTGTGNAGCAGGCCTCACAGAATACG-AGCTTGTCCACAGNTGNCCTAGAAGCTG 644
*** * ** * * ** * ** * **** * ** ** * * * *
consensus_7614#0 AGCCGACG---CCGGGCCG--GCTGGTCGAC-ATCTGGA-AAACACGAAGGGCTTCAGCC 685
consensus_7614#2 AGC-GACG---CCGGGCCG--GCTGGTCGACCATCTGGA-AAACACGAAGGGCTTCAG-- 681
consensus_7614#1 AAACTATGGTCCCGAGACGAGGCGAATGGAATNCTTGGTTGAACNGCCACAGCCGNAATC 704
* * * *** * ** ** * ** *** *** * ** *
consensus_7614#0 TGAAGGCCATCCGGTACCTGGTGATGGACGAGGCGGACCGCATCCTCAACATGGACTTCG 745
consensus_7614#2 ------------------------------------------------------------
consensus_7614#1 ACACGACTACGGCCCCGCCAAACCCGGAACCA---------------------------- 736
consensus_7614#0 AGGAGGAGGTAAACAAAATCCTCAAGGTGATGCCGCGCGAACGGCGCACCTTCCTGTTCA 805
consensus_7614#2 ------------------------------------------------------------
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 GCGCCACCATGACGAAGAAGGTGAAAAAGCTCGAGCGC 843
consensus_7614#2 --------------------------------------
consensus_7614#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||