cluster # 7621

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Anopheles gambiae
cluster # 7621 cluster # 7621 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7621#0 length = 260 sequences # 6

consensus_7621#1 length = 99 sequences # 1

consensusID : consensus_7621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 260
fasta sequence

                              [GTTTTTCAGAGCTTGGATCTGTAACGGCGCAGAACAGAAAACGAAACAAAGACGTAGA-GTTGAGCAAGCAGGGTCAGGCAA-AGCGTGGAGAGCCGGCTGAGTCTAGG-TAGGCTCCAAGGGAGC-GCCGGACAAAGGCCCGGTCTCGACCTG-AGCTTTAAACTTACCTAGACGGCGGACGCAGTTCAGGAGGCACCACAGG-CGGGAGGCGGCAGAACGCGACTCAACCGGCGT-GGATGGCGGCCTCAGGTAGGGCGGCGGGC]

[+] EMBL CNS09JRY             [GTTTTTCAGAGCTTGGATCTGTAACGGCGCAGAACAGAAAACGAAACAAAGACGTAGA GTTGAGCAAGCAGGGTCAGGCAA AGCGTGGAGAGCCGGCTGAGTCTAGG TAGGCTCCAAGGGAGC GCCGGACAAAGGCCCGGTCTCGACCTG AGCTTTAAACTTACCTAGACGGCGGACGCAGTTCAGGAGGCACCACAGG CGGGAGGCGGCAGAACGCGACTCAACCGGCGT GGATGGCGGCCTCAGGTAGG         ]
[+] EMBL CNS09NLO             [                 TCTGTAACGGCGCAGAACAGAAAACGAAACAAAGACGTAGATGTTGAGCAAGCAGGGTCAGGCAA AGCGTGGAGAGCCGGCTGAGTCTAGG TAGGCTCCAAGGGAGCGGCCGGACAAAGGCCCGGTCTCGACCTG AGCTTTAAACTTACCTAGACGGCGGACGCAGTTCAGGAGGCACCACAGG CGGGA                                                         ]
[+] EMBL CNS08QES             [                 TCTGTAACGGCGCAGAACAGAAAACGAAAAAAAGACGTAGA GTTGAGCAAGCAGGGTCAGGCAA AACGTGGAGAGCCGGCTGAGTCTAG                                                                                                                                                               ]
[+] EMBL CNS0902X             [                                                  GACGTAGA GTTGAGCAAGCAGGGTCAGGCAATAGCGTGGAGAGCCGGCTGAGTCTAGGTTAGGCTCCAAGGGAGC GCCGGACAAAt                                                                                                                                 ]
[+] EMBL CNS08DDG             [                                                         A GTTGAGCAAGCAGGGTCAGGCAA AGCGTGGAGAGCCGGCTGAGTCTAGG TAGGCTCCAAGGGAGC GCCGGACAAAGGCCCGGTCTCGACCTG AGCTTTAAACTTACCTAGACGGCGGACGCAGTTCAGGAGGCACCACAGGACGGGAGGCGGCAGAAC                                              ]
[+] EMBL CNS08KRH             [                                                                                                     AGTCTAGG TAGGCTCCAAGGGAGC GCCGGACAAAGGCCCGGTCTCGACCTGTAGCTTTAAACTTACCTAGACGGCGGACGCAGTTCAGGAGGTATCACAGG CGGGAGGCGGCAGAACGCGACTCAACCGGCGTGGGATGGCGGCCTCAGGTAGGGCGGCGGGC]




>consensus_7621#0
GTTTTTCAGAGCTTGGATCTGTAACGGCGCAGAACAGAAAACGAAACAAAGACGTAGAGT
TGAGCAAGCAGGGTCAGGCAAAGCGTGGAGAGCCGGCTGAGTCTAGGTAGGCTCCAAGGG
AGCGCCGGACAAAGGCCCGGTCTCGACCTGAGCTTTAAACTTACCTAGACGGCGGACGCA
GTTCAGGAGGCACCACAGGCGGGAGGCGGCAGAACGCGACTCAACCGGCGTGGATGGCGG
CCTCAGGTAGGGCGGCGGGC

consensusID : consensus_7621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 99
fasta sequence

                              [TAGGGAGGCCCCAAGGGAGCGCCGGACAAAGGCCCGGGCCCGACCTGAGCCAAAAACAAACCAAGACGGCGGACGCAGTTCAGGAGGCACCACAGGCGG]

[+] EMBL CNS08X0R             [TAGGGAGGCCCCAAGGGAGCGCCGGACAAAGGCCCGGGCCCGACCTGAGCCAAAAACAAACCAAGACGGCGGACGCAGTTCAGGAGGCACCACAGGCGG]




>consensus_7621#1
TAGGGAGGCCCCAAGGGAGCGCCGGACAAAGGCCCGGGCCCGACCTGAGCCAAAAACAAA
CCAAGACGGCGGACGCAGTTCAGGAGGCACCACAGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7621#0      GTTTTTCAGAGCTTGGATCTGTAACGGCGCAGAACAGAAAACGAAACAAAGACGTAGAGT 60
consensus_7621#1      ------------------------------------------------------------
                                                                                  

consensus_7621#0      TGAGCAAGCAGGGTCAGGCAAAGCGTGGAGAGCCGGCTGAGTCTAGGTAGGCTCCAAGGG 120
consensus_7621#1      -------------------------------------------TAGGGAGGCCCCAAGGG 17
                                                                 **** **** *******

consensus_7621#0      AGCGCCGGACAAAGGCCCGGTCTCGACCTGAGCTTTAAACTTACCTAGACGGCGGACGCA 180
consensus_7621#1      AGCGCCGGACAAAGGCCCGGGCCCGACCTGAGCCAAAAACAAACCAAGACGGCGGACGCA 77
                      ******************** * **********   ****  *** **************

consensus_7621#0      GTTCAGGAGGCACCACAGGCGGGAGGCGGCAGAACGCGACTCAACCGGCGTGGATGGCGG 240
consensus_7621#1      GTTCAGGAGGCACCACAGGCGG-------------------------------------- 99
                      **********************                                      

consensus_7621#0      CCTCAGGTAGGGCGGCGGGC 260
consensus_7621#1      --------------------