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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1915 fasta sequence
[CCGGTCCCGCTGAACAGACACGAAGATGACGGCGATGCCATGGGCGATCGACGATTCCAGCGCAATCATCATCGCCGAAACGATGATGCAGATGACGAAAGGCCACAGCCCATCCTGTACTCCCCGGAACCGGAAGAGGAGCCGGACGAAATGGGTGGCAATGACCAGTATGCTCGGGAGGATAATACAAACTACCACCAAGGGGACGATAATGGTGGCCAAGATCATCCTGACCGTGGAGTGGAAGCAACCGATGAGCTGATGAATCAATGTCAGCCACAGGAAGATAGCTCGCAATTCGGCGGAGCAACGGCGGACGATCGTTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAGCAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCGACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACCGCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCGAT--ATATA--TAT-ATATTTAGTGTTGCATACAGTTAGTGCAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTAGAATGATACTATACGACAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGAATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTTTAGCATGATGCTTTCAGATGTGGCTGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGATCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAG-TCCAATTGCGCCGTTTTACGATTGTTTCTTTTT--AAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGCTGCGTAGAATGTTCTTCAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAATCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTAGAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAGCAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTTGGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCG-GAGTATACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAGATATATATATAAAACCAGACGTGGACCTGCATCTGTGTAAGCTTTTAAACGCGTCAACAACTATAT--TCTCAAACAGAATGTACATCATGCAGTGGTGCGGCAAAGAAAAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTTTAAGTAATGCTGTTCGGTTGCCCTACCGGTCAGCTGGGATGGTG-GACAGATTACGAAAAAGGTCTCTTAATTATTAGGAGCTTAACTACACTCAAAAGTCGATGATCCGATCCCCATATTTGTACTCATACTAGTGTGTAACAATAAAGCAATGCATACATTATTCGTCCTTTGA]
[+] EMBL BM610923 [CCGGTCCCGCTGAACAGACACGAAGATGACGGCGATGCCATGGGCGATCGACGATTCCAGCGCAATCATCATCGCCGAAACGATGATGCAGATGACGAAAGGCCACAGCCCATCCTGTACTCCCCGGAACCGGAAGAGGAGCCGGACGAAATGGGTGGCAATGACCAGTATGCTCGGGAGGATAATACAAACTACCACCAAGGGGACGATAATGGTGGCCAAGATCATCCTGACCGTGGAGTGGAAGCAACCGATGAGCTGATGAATCAATGTCAGCCACAGGAAGATAGCTCGCAATTCGGCGGAGCAACGGCGGACGATCGTTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAGCAACAAGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCGACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGATACCGCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCGTTGCATACAGTTATAATATATA ]
[+] EMBL BX605198 [ TGGCAGTCACAGGAAGAAAGCTCGCAATTCGGCGGAGCAACGGCGGACGATCGGTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGACGAGGATAATGACTACTCCCATCAGGAAAAGCAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCGACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACCGCCGAAGAGGAATCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCGAT ATATA TAT ATATTTAGTGTTGCATACAGTTAGTGCAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTAGAATGATACTATACGACAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGAATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTTTAGCATGATGCTTTCAGATGTGGCTGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGATCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAG TCCAATTGCGCCGTTTTACGATTGTTTC ]
[+] EMBL BX617100 [ CGAGAACAGGAGCAATCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAGCAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCTTCTTCCCCGATGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACCGCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCG ATATA TAT ATATTTAGTGTTGCATACAGTTAGTGCAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTATAATGATACTATACGACAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGCCGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGACCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAG TCCAATTGCGCCGTTTTACGATTGTTTCTTTTT AAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGA ]
[+] EMBL CNS09KUU [ taACTTTCCCAGTTCAAATTGCGCCGTTTTACGATTGTTTCTTTTTTAAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGCTGCGTAGAATGTTCTTCAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAATCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTAGAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAGCAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTTGGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCG GAGTTTACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAGATATATATATAA ]
[-] EMBL CNS09KUV [ CAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAATCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTAGAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAGCAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTTGGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCGCGAGTATACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAGATATATATATAAAACCAGACGTGGACCTGCATCTGTGTAAGCTTTTAAACGCGTCAACAACTATAT TCTCAAACAGAATGTACATCATGCAGTGGTGCGGCAAAGAAAAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTTTAAGTAATGCTGTTCGGTTGCCCTACCGGTCAGCTGGGATGGTG GACAGATTACGAAAAA ]
[-] EMBL BM617117 [ gaTTTACTCGTAGTATCGTCGCTCATCGCTGATTAAGACATCGCGATCGCATCGCGAGTAAACTTTCCTGG AAAGGGGAAGGATAGAGCAGCACATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTTGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAG ATATATATAATACCAGACGTGGACCTGCATCTGTGGAAGCTTTTAAACGCGTCAACAATTATATTCTCTCAAACAGAATGTACATCATGCAGTGGTGCGGCAAAGAAGAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTTTAAGTAATGCTGTTCGGTTGTCCTACCGGTCAGCTGGGATGGAGAAACAGATTACGAAAACGGTCTCTTAATTATTAGGAGCTTAACTACACTCAAAAGTCGATGATCCGATCCCCATATTTGTACTCATACTAGTGTGTAACAATAAAGCAATGCATACATTATTCGTCCTTTGA]
consensusID : consensus_7623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[GCCCCGAGGTTAAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGCCGGGAAACGTGAAAATTGTAGTTTTTATGTGTGTATCTGTGTGACCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCCGTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGC]
[+] EMBL AL694214 [GCCCCGAGGTTAAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGCCGGGAAACGTGAAAATTGTAGTTTTTATGTGTGTATCTGTGTGACCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCCGTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7623#0 CCGGTCCCGCTGAACAGACACGAAGATGACGGCGATGCCATGGGCGATCGACGATTCCAG 60
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CGCAATCATCATCGCCGAAACGATGATGCAGATGACGAAAGGCCACAGCCCATCCTGTAC 120
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 TCCCCGGAACCGGAAGAGGAGCCGGACGAAATGGGTGGCAATGACCAGTATGCTCGGGAG 180
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GATAATACAAACTACCACCAAGGGGACGATAATGGTGGCCAAGATCATCCTGACCGTGGA 240
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GTGGAAGCAACCGATGAGCTGATGAATCAATGTCAGCCACAGGAAGATAGCTCGCAATTC 300
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GGCGGAGCAACGGCGGACGATCGTTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCT 360
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 TCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAG 420
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCG 480
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 ACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACC 540
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATC 600
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CTAAAACATGTGTAAAGGGCGTCGATATATATATATATTTAGTGTTGCATACAGTTAGTG 660
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTAGAATGATACTATACGACAGTG 720
consensus_7623#1 -------------------------------------------GCCCCGAGGTTA-AGTG 16
* * * * ****
consensus_7623#0 GGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGAATAGTTAAGCCAAACAAATTAT 780
consensus_7623#1 GGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTAT 76
************************************* **********************
consensus_7623#0 TTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTTTAGCATGATGCTTTCAGATGTGGC 840
consensus_7623#1 TTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGC 136
*********************************** ***********************
consensus_7623#0 TGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGATCAAAATTGTATGAG 900
consensus_7623#1 CGGGAAACGTGAAAATTGTAGTTTTTATGTGT-GTATCTGTGTGACCAAAATTGTATGAG 195
******************************* ************ **************
consensus_7623#0 AATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCC 960
consensus_7623#1 AATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCC 255
************************************************************
consensus_7623#0 GTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTG 1020
consensus_7623#1 GTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTG 315
************************************************************
consensus_7623#0 GGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAG 1080
consensus_7623#1 GGTATTT-ATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAG 374
******* ****************************************************
consensus_7623#0 AACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCG 1140
consensus_7623#1 AACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCG 434
************************************************************
consensus_7623#0 CTGCGTAGAATGTTCTTCAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAA 1200
consensus_7623#1 C----------------------------------------------------------- 435
*
consensus_7623#0 TCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTA 1260
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAG 1320
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTT 1380
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCGGAGTAT 1440
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 ACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGA 1500
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 TTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTG 1560
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 AACGATGATGCAAATTATTCAACATTTTAAGATATATATATAAAACCAGACGTGGACCTG 1620
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CATCTGTGTAAGCTTTTAAACGCGTCAACAACTATATTCTCAAACAGAATGTACATCATG 1680
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 CAGTGGTGCGGCAAAGAAAAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTT 1740
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 TAAGTAATGCTGTTCGGTTGCCCTACCGGTCAGCTGGGATGGTGGACAGATTACGAAAAA 1800
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 GGTCTCTTAATTATTAGGAGCTTAACTACACTCAAAAGTCGATGATCCGATCCCCATATT 1860
consensus_7623#1 ------------------------------------------------------------
consensus_7623#0 TGTACTCATACTAGTGTGTAACAATAAAGCAATGCATACATTATTCGTCCTTTGA 1915
consensus_7623#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||