cluster # 7643

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Anopheles gambiae
cluster # 7643 cluster # 7643 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7643#0 length = 987 sequences # 6

consensus_7643#1 length = 191 sequences # 1

consensusID : consensus_7643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 987
fasta sequence

                              [TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCGTTCTTTTGGC-TGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGCTTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCGGCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCGCTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTGAAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACGCTGCTGAACGCG-AGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGCATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTTCTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCATATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGTATAAACAATAAATTCGACGGCCCACGA]

[+] EMBL AGA280844            [TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGTTTGCCCTGACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCGTTCTTTTGGC TGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CNS09MSG             [  aTTTTTGCGATCAACTCCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCCTTCTTTTGGCGTGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AL932744             [                        ccgcaggttACT AAAAACA TGTTTTCCGCCCAAAACTTTGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCGTTCTTTTGGC TGGTATCGTTGCTACTTTCGTCAACCGTGTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGCTTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AGA280185            [                                                                                              TAATTTGGCGAAGCGAGAAGTGATATAATTTAGCTATGAACATGACTGTACTGGCATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AGA282472            [                                                                                                                                                                                                                                                                                                                                                                                                       CGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGCTTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCGGCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCGCTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTGAAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACGCTGCTGAACGCG AGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGCATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTTCTCACGTGCAAG                                                                                                                                       ]
[-] EMBL CNS09MSH             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGTGGTGGAAAGCCATCTGTTCGTTTCCTGCATGACGCTGCTGAACGCGAAGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGCATAACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTTCTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCATATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGTATAAACAATAAATTCGACGGCCCACGA]




>consensus_7643#0
TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAA
ACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATAT
AATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGG
CCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTG
ATTGCTGCATCGTTCTTTTGGCTGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCA
TTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAA
GGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTG
ACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGC
TTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCG
GCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCG
CTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTG
AAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACG
CTGCTGAACGCGAGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGC
ATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTT
CTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCA
TATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGT
ATAAACAATAAATTCGACGGCCCACGA

consensusID : consensus_7643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence

                              [CGCGTCCGCCCACGCGTCCGCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGCTTGCCCTGACGATAGCGCACGATCCGATCCG]

[+] EMBL BM651737             [CGCGTCCGCCCACGCGTCCGCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGCTTGCCCTGACGATAGCGCACGATCCGATCCG]




>consensus_7643#1
CGCGTCCGCCCACGCGTCCGCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATA
ATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTC
GGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGCTTGCCCTGACGATAGCGCAC
GATCCGATCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7643#0      TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAA 60
consensus_7643#1      ------------------------------------CGCGTCCGCCCACGCGTCCGCAAA 24
                                                                *           * ****

consensus_7643#0      ACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATAT 120
consensus_7643#1      ACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATAT 84
                      ************************************************************

consensus_7643#0      AATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGG 180
consensus_7643#1      AATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGG 144
                      ************************************************************

consensus_7643#0      CCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTG 240
consensus_7643#1      CCACCGGTGGCTATGCTTGCCCTGACGATAGCGCACGATCCGATCCG------------- 191
                      ******** ****** ******* ***********************             

consensus_7643#0      ATTGCTGCATCGTTCTTTTGGCTGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCA 300
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      TTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAA 360
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      GGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTG 420
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      ACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGC 480
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      TTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCG 540
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      GCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCG 600
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      CTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTG 660
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      AAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACG 720
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      CTGCTGAACGCGAGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGC 780
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      ATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTT 840
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      CTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCA 900
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      TATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGT 960
consensus_7643#1      ------------------------------------------------------------
                                                                                  

consensus_7643#0      ATAAACAATAAATTCGACGGCCCACGA 987
consensus_7643#1      ---------------------------