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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1110 fasta sequence
[GAATNGCCCGAGGTTTATGCGGTTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCG-AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATGGGGCACGAGGTGAAGGCGGCCGATTTTCTCCCGGTTGCGGTAGTGCAGCACCCGGGCGCGACCGCCCTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGCTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCTATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGATTGTAATTTTTTTAGTAGTGCGCGTTAAGGAGTTTCCCCTTTTTGTTTTTGTTTTTATGTTTTAACACCAAGAATAATAGTGGCGAAAATTACGCACGAGAAG]
[+] EMBL AL930690 [GAATNGCCCGAGGTTTATGCGGTTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCG AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGC ]
[+] EMBL BX625073 [ TTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCG AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATGGGGCACGAGGTGAAGGCGGCCGATTTTCTCCCGGT ]
[+] EMBL BX621832 [ CCCGGCGCAAACGGAGCGGCAACCCG AACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATGGGGCACGAGGTGAAGGCGGCCGATTTTCTCCCGGGTGCGGTAGTGCAGCACCCGGGCGCGACCGCCCTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGCTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCTATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGATTGTAATTTTTTTAGTAGTGCGC ]
[+] EMBL BX621893 [ AACCCGCAACAGNTCTGCCGGNAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGNTTCGCCCGAGCTNTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGCCGCCGGACGTGAAGGACATCNAGCTGATANCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTCATG ]
[+] EMBL BX618028 [ CGTGCTACCCTACTCGCTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCTATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGATTGTAATTTTTTTAGTAGTGCGCGTTAAGGAGTTTCCCCTTTTTGTTTTTGTTTTTATGTTTTAACACCAAGAATAATAGTGGCGAAAATTACGCACGAGAAG]
consensusID : consensus_7662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 897 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGGCGGTCCGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTG-CCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTTCATGGGGCACGAGGTGNAAGGCGGCCGATTTTCTCCCGGGTCGGTAGTGCAGCACCCCGGCGGCGACTGCCTTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGTTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCGCCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCCTAGAAAATCAANAAAAGGCAGGCATGTGC]
[+] EMBL BM630155 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGCGGGCGGTCCGGTTGGCCAAGCTGGCCGAACGGATGCGTATCGCCCGTGCGAACGAAACGCCCGAACAGCGGGCCATGCGGCTGGCCAAGAACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAAAGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCGGCAGCAGCAGCAGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTG CCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGC ]
[-] EMBL BX466679 [ AGCAACGATGCGGCCATACACAGTACGCTCGCTTCGCCCGAGCTTTCCTACGGCCATAGCTACGTCCCCGACCTTGGCCACGGGGTGTCCGCCGGACGTGAAGGACATCAAGCTGATAGCCTCGCCGAAGCAGCACGTCGGCAGCGGCGCACAGCAACCGGAACAGATCTACAGCACACCGCACCTGCCCTTTCATGGGGCACGAGGTGNAAGGCGGCCGATTTTCTCCCGGGTCGGTAGTGCAGCACCCCGGCGGCGACTGCCTTACACCACCACGACCTGTCCAACCCGAACAACGTGCTAAAGTTTCACGTGCTACCCTACTCGTTGCCGCCCGGTGCAGCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCGCCCCATCCCGGACATACGGTGTACAAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCTCCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTGAAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACATATATACAAACCCTAGAAAATCAANAAAAGGCAGGCATGTGC]
consensusID : consensus_7662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[CACCACCAGCAGATTCGCGCGTGACCCGCAGCAACCTGTCCCGGTCGGAAAGGTGACAGACGACGCACTTACGACTGCTACGATTTCTAAACAATGAACGCGCCATATCCGACACCGAACGCATGCTACACGGACATCAAGCAGGGCATCCTTTCCTACACGCTACCCCTGCGCACCGATCTGAGCGATATTCCGGGACCGCCCATAAGCTTGCTGCCAACTCCGCCCCACAGCCTGCTGCCAACCGTCGCGCAGGACAAATCATCGTCCTCCTCCGGGCAGAAGAAGAAGCGCCGCGCGTACGTGAACGAAAGCGAGGAGGCCCGGGCACGCCGCCTAGCGCGCAACGCAGAAAGGATGCGGCAGAAGCGCGCCAACGAGACGGAGGAAGAGTACCGGCTGCGGCTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTGCGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTCC]
[+] EMBL BX605709 [CACCACCAGCAGATTCGCGCGTGACCCGCAGCAACCTGTCCCGGTCGGAAAGGTGACAGACGACGCACTTACGACTGCTACGATTTCTAAACAATGAACGCGCCATATCCGACACCGAACGCATGCTACACGGACATCAAGCAGGGCATCCTTTCCTACACGCTACCCCTGCGCACCGATCTGAGCGATATTCCGGGACCGCCCATAAGCTTGCTGCCAACTCCGCCCCACAGCCTGCTGCCAACCGTCGCGCAGGACAAATCATCGTCCTCCTCCGGGCAGAAGAAGAAGCGCCGCGCGTACGTGAACGAAAGCGAGGAGGCCCGGGCACGCCGCCTAGCGCGCAACGCAGAAAGGATGCGGCAGAAGCGCGCCAACGAGACGGAGGAAGAGTACCGGCTGCGGCTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTTGCGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7662#0 GAATNGCCCGAGGTTTATGCGGTTGGCCAAGAATGCGGAAAGCAATCGACGGAAGCGACA 60
consensus_7662#1 ------------------------------------------------------------
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 AAACGAGACTGATCTAGAGCGCACCATCCGCCATGCCCGCAGTGCGGCACGCGAACGCTT 120
consensus_7662#1 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGCCC 30
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 ACGGCGCGCGATGGAAACGCCCGAGCAGCGGGCGGTACGGTTGGCCAAGCTGGCCGAACG 180
consensus_7662#1 ACG-CGTCCGCC-----CACGCGTCCGGCGGGCGGTCCGGTTGGCCAAGCTGGCCGAACG 84
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 GATGCGTATCGCCCGTGCGAACGAAACGCC-CGAACAGCGGGCCATGCGGCTGGCCAAGA 239
consensus_7662#1 GATGCGTATCGCCCGTGCGAACGAAACGCC-CGAACAGCGGGCCATGCGGCTGGCCAAGA 143
consensus_7662#2 --------------------------CACCACCAGCAGATTCGCGCGTGACCCGC-AGCA 33
* ** * * *** * * * * ** * *
consensus_7662#0 ACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAA 299
consensus_7662#1 ACGCGGCCAAAGCGAAGGAGCGCCTGATGAAGGAGTCGCCCGAACAGTGGATCGAGCGAA 203
consensus_7662#2 ACCTGTCCCGGTCGGAAAGGTGACAGACGACGCACTTACG-----ACTGCTACGATTTCT 88
** * ** ** * * * * ** ** * * * * * ** ***
consensus_7662#0 AGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCG 359
consensus_7662#1 AGCGAAAGAAAGCGGAATACGCCCGGCGCAAACGGAGCGGCAACCCGAACAGCTCTGCCG 263
consensus_7662#2 AAACAATGAACGCGCCATA--TCCGACACCGAACGCATG-CTACACGGACATCAAGCAGG 145
* ** *** *** *** *** * * * * * * ** ** *** * *
consensus_7662#0 GCAGCAGCAGCAGCAACGATGCGGCCATACACAG-TACGCTCGCTTCGCCCGAGCTTTCC 418
consensus_7662#1 GCAGCAGCAGCAGCAACGATGCGGCCATACACAG-TACGCTCGCTTCGCCCGAGCTTTCC 322
consensus_7662#2 GCATCCTTTCCTACA-CGCTACCCCTGCGCACCGATCTGAGCGATATTCCGGGAC----- 199
*** * * ** ** * * * *** * * * ** * ** * *
consensus_7662#0 TACGGCCATAGCTACGTCCCCGACCTTGGCC-ACGGGGTGCCGCCGGACGTGAAGGACAT 477
consensus_7662#1 TACGGCCATAGCTACGTCCCCGACCTTGGCC-ACGGGGTGCCGCCGGACGTGAAGGACAT 381
consensus_7662#2 --CGCCCATAAGCTTGCTGCCAACTCCGCCCCACAGCCTGCTGCCAACCGTCGCGCAGGA 257
** ***** * ** ** * ** ** * *** *** *** * *
consensus_7662#0 CAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACA-GCAACCGGAACAGA 536
consensus_7662#1 CAAGCTGATAGCCTCGCCGAAGCAGCACGGCGGCAGCGGCGCACA-GCAACCGGAACAGA 440
consensus_7662#2 CAAATCATCGTCCTCCTCCGGGCAGAAGAAGAAGCGCCGCGCGTACGTGAACGAAAGCGA 317
*** **** * **** * ** **** * * * ** ** **
consensus_7662#0 TCTACAGCACACCGCACCTGCCCTT-CATGGGGCACGAGGTGAA-GGCGGCCGATTTTCT 594
consensus_7662#1 TCTACAGCACACCGCACCTGCCCTTTCATGGGGCACGAGGTGNAAGGCGGCCGATTTTCT 500
consensus_7662#2 ---GGAGGCCCGGGCACGCCGCCTAGCGCGCAACGCAGAAAGGA-TGCGGCAGAAGCGCG 373
** * **** *** * * * * * * ***** ** *
consensus_7662#0 CCCG-GTTGCGGTAGTGCAGCACCCGGGCG-CGACCGCCCTACACCACCACGACCTGTCC 652
consensus_7662#1 CCCG-GGT-CGGTAGTGCAGCACCCCGGCGGCGACTGCCTTACACCACCACGACCTGTCC 558
consensus_7662#2 CCAACGAGACGGAGGAAGAGTACC--GGCTGCGGCTGGCCAAGAATGCGGAAAGCAATC- 430
** * *** * ** *** *** ** * * * * * * * * **
consensus_7662#0 AACCCGAACAACGTGCTAAAGTT--TCACGTGC-TACCCTACTCGCTGCCGCCCGGTGCA 709
consensus_7662#1 AACCCGAACAACGTGCTAAAGTT--TCACGTGC-TACCCTACTCGTTGCCGCCCGGTGCA 615
consensus_7662#2 GACGGAAGCGACAAAACGAGACTGATCTAGAGCGCACCATCCGCCATGCC-CGCAGTGCG 489
** * * ** * * ** * ** *** * * * **** * * ****
consensus_7662#0 GCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCACCCCATCCCGGACATACGGTGTAC 769
consensus_7662#1 GCGCCACCGGCGGTACCGGCTGGCCCCGGTATGCCGCCCCATCCCGGACATACGGTGTAC 675
consensus_7662#2 GCAC-GCGAACGCTTGCGGCGCGCGATGGAAA--CGCCCGAGC---AGCGGGCGGTCC-- 541
** * * ** * **** ** ** * * *** * * * ****
consensus_7662#0 AAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCT 829
consensus_7662#1 AAACACAGCAAACATTGAGCGGACAAAATGGGTGGAATTTATTGTAAGAATCGACAACCT 735
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 CCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTG 889
consensus_7662#1 CCCCCCCTCACGGAAACGATGGCAAACGTTTCCGTACGCAAGTGAAGCGTACAGGGGTTG 795
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 AAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACA 949
consensus_7662#1 AAATTACGTACAGCAAAATTCACAATTGAACTTTGTGTGCAAACAAAACTAGGCAATACA 855
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 TATATACAAACC-TATTCATTACTGACACGATAAGCTTAAGCGAGGCAAGGTGAAGCGAT 1008
consensus_7662#1 TATATACAAACCCTAGAAAATCAANAAAAGGCAGGCATGTGC------------------ 897
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 TGTAATTTTTTTAGTAGTGCGCGTTAAGGAGTTTCCCCTTTTTGTTTTTGTTTTTATGTT 1068
consensus_7662#1 ------------------------------------------------------------
consensus_7662#2 ------------------------------------------------------------
consensus_7662#0 TTAACACCAAGAATAATAGTGGCGAAAATTACGCACGAGAAG 1110
consensus_7662#1 ------------------------------------------
consensus_7662#2 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||