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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1204 fasta sequence
[CCGCTTAAAAGTTGAATGTGAAGCGTGATGATGGGCCACCATACGAACAGAGTGTGTGTATGGTTGTACGCGTATGGGTGTAATTTGAAAGCGAAACAAAAGCAAAAGTTGTAAGATTCTAAATTTTGATTATAGAGTTTATTTTCGATTGTCGATCAAAAAAGACGCTAAAAGTGTGAAATTCCTTGAACAATGTGAATCTAAATTTGCTTTACCGCTTTATTTCTACTGTAAAGCAAACCCTTTTCTATTTTATTATAATTAATTTGTATTTTATATTAATTTTGAAAGCGCGGAGCCACAGAGCAGCGAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG-AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGTAGCGTGAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAAC]
[+] EMBL BM614141 [CCGCTTAAAAGTTGAATGTGAAGCGTGATGATGGGCCACCATACGAACAGAGTGTGTGTATGGTTGTACGCGTATGGGTGTAATTTGAAAGCGAAACAAAAGCAAAAGTTGTAAGATTCTAAATTTTGATTATAGAGTTTATTTTCGATTGTCGATCAAAAAAGACGCTAAAAGTGTGAAATTCCTTGAACAATGTGAATCTAAATTTGCTTTACCGCTTTATTTCTACTGTAAAGCAAACCCTTTTCTATTTTATTATAATTAATTTGTATTTTATATTAATTTTGAAAGCGCGGAGCCACAGAGCAGCGAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTG ]
[+] EMBL BX621098 [ GAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCTACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGNTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGGNAAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTANGGGTGGTAAAACCCTCCTATTGCTGCTGCAACT ]
[+] EMBL BX620727 [ ATAAACAATCAACCCCGTNATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATTTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTANGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATA ]
[+] EMBL BX621914 [ AACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCTACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGT ]
[+] EMBL BX625190 [ AACCCCGTAATAAATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCT ]
[+] EMBL BX623254 [ ATGGAAAACAGCCCCACAAACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTAAGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGCCTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGAAACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGTAAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAAT ]
[+] EMBL BX618614 [ CACGTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCTGTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATTTCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCCATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAGACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGTCGTCGTGCAGTAGCTAGCAGG AAGTAAAAAGGCACCACACCACACTATCTTATGCACAGAGGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGTAGCGTGAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAAC]
consensusID : consensus_7671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCGTGCGCGCGCGCGCGAAAAACCAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAACGAACCCCCTCTGCGAAACACTTTAACCTAATTGGAAAGATTTCGCGCAGAAAGTGCTTGGTGTGTGTGTGTGTGTATATAATGTGGAAATTTACAAACAACTGGCTGTAAAGTAAAGGAAGCGAATGGTAAAAAACACTGAAGAAAGTGAGGCTGTTGCAGCCGTTATTAGCGAGTCGCGTGAGAGAGGCGAGGGGCAGGATTAAGTATATACACTAACTCGATGAGCGGTTATTGCGATAAAAGATAACGGAAAACGGAAGGGGGAGAAAATACGGTGAGGAAAACATTGAGGAAACACAAAAGTA]
[+] EMBL BM644639 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGTGCGCGCGCGCGCGAAAAACCAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATCTTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTGGGAACGAACCCCCTCTGCGAAACACTTTAACCTAATTGGAAAGATTTCGCGCAGAAAGTGCTTGGTGTGTGTGTGTGTGTATATAATGTGGAAATTTACAAACAACTGGCTGTAAAGTAAAGGAAGCGAATGGTAAAAAACACTGAAGAAAGTGAGGCTGTTGCAGCCGTTATTAGCGAGTCGCGTGAGAGAGGCGAGGGGCAGGATTAAGTATATACACTAACTCGATGAGCGGTTATTGCGATAAAAGATAACGGAAAACGGAAGGGGGAGAAAATACGGTGAGGAAAACATTGAGGAAACACAAAAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7671#0 CCGCTTAAAAGTTGAATGTGAAGCGTGATGATGGGCCACCATACGAACAGAGTGTGTGTA 60
consensus_7671#1 ----------------------------------CCGCCCACGCGTCC-GCCCACGCGTC 25
* *** ** * * * **
consensus_7671#0 TGGTTGTACGCGTATGGGTGTAATTTGAAAGCGAAACAAAAGCAAAAGTTGTAAGATTCT 120
consensus_7671#1 CGGC-GTGCGCGCGCGCGCGAAAAACCAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGT 84
** ** **** * * * ** * * **** * *** ** ** * * *
consensus_7671#0 AAATTTTGATTATAGAGTTTATTTTCGATTGTCGATCAAAAAAGACGCTAAAAGTGT-GA 179
consensus_7671#1 GTGTAT-GATAGTAACTGTAATCTTAAATGGGCAGAC--------CGTCTATCGTGTCGC 135
* * *** ** * ** ** ** * * * ** * **** *
consensus_7671#0 AATTCCTTGAACAATGTGAATCTAAATTTGCTTTACCGCTTTATTTCTACTGTAAAGCAA 239
consensus_7671#1 TATAAAAAAAAGAGCGTGAAAG-GAATTGGTGGGAACG---AACCCCCTCTGCGAAACA- 190
** ** * ***** **** * * ** * * *** ** **
consensus_7671#0 ACCCTTTTCTATTTTATTATAATTAATTTGTATTTTATATTAATTTTGAAAGCGCGGAGC 299
consensus_7671#1 -----CTTTAACCTAATTGGAAAGATTTCGCGCAGAAAGTGCTTGGTGTGTGTGTGTGTG 245
** * * *** ** * ** * * * * ** * * *
consensus_7671#0 CACAGAGCAGCGAACAAGATAAACAATCAACCCCGTAATAAATGGAAAACAGCCCCACAA 359
consensus_7671#1 TATATAATGTGGAAATTTACAAACAACTGGCTGTAAAGTAAA-GGAAGCGAATGGTAAAA 304
* * * *** * ****** * * **** **** * * **
consensus_7671#0 ACTGAACGTTGAGTTTAGAGCTAGGTTCAAAATTGTGATATCATTTATCTAAATGCGTTA 419
consensus_7671#1 A----ACACTGAAG--AAAGTGAGGCT----GTTGCAGCCGTTATTAGCGAGTCGCGTGA 354
* ** *** * ** *** * *** *** * * **** *
consensus_7671#0 AGGAAATTATGTATAAGCCTTCTCCCTTCTTTCCCAATTATTCTCTCCTTTATCTCTTGC 479
consensus_7671#1 GAGAGGCGAGGGGCAGGATT---------------AAGTATATACAC-----TAACTCGA 394
** * * * * * ** *** * * * ** *
consensus_7671#0 CTAATTTATGCTGCTGAACCAGGCAACTAGCAAAATCATAATCCAACCGAATCAAACCGA 539
consensus_7671#1 TGAGCGGTTATTGCGATAAAAGATAAC--GGAAAACGGAAGGGGGAGAAAAT---ACGGT 449
* * *** * ** *** * **** * * *** ** *
consensus_7671#0 AACCGAATTAGCCACGAAGCAACGGGAGTAGCGAACGAAACCAAAATTGAATGTAATTGT 599
consensus_7671#1 GAGGAAAACATTGAGGAAACA-CAAAAGTA------------------------------ 478
* ** * * *** ** * ****
consensus_7671#0 AAACACGCCAAGATGCAAACTTTTACTGTGTATTATTCCATTACCATCCCCCAAGCCCAC 659
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 GTGGAAAAATGTTTAATGAAAACGCAAAACCTCTGTCTGTCTGTGTAATCTGTAATTGCT 719
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 GTTTGACGGACACCACACACAGCTTTGGGAAGAAGCTTGGTAGGAAATTCCTCCCGCATT 779
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 TCTTCTCCTTCTCGTTGCCCACGCTTTATCCCCACTTAGCTTAATTTGTGTTCTCGCGCC 839
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 ATGTACATAGTAGAGACACGCAAAGTGAGATTCACCGTACACAAATACACAATCACACAG 899
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 ACCTATTTTGATGAGCAATCGAGAGCAGTTTCTAGGGTTTTTCGGTAGTTTGTCGCGTGT 959
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 CGTCGTGCAGTAGCTAGCAGGAAGTAAAAAGGCACCACACCACACTATCTTATGCACAGA 1019
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 GGCGTTATAACAGACCCTAGGGTTGGTAAAACCCTCCTATTGCTGCTGCAACTTAGCGTA 1079
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 GCGTGAGAAGAAAACGAGAGCCTTAGCCGTGTAAATGTGTGTATGATAGTAACTGTAATC 1139
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 TTAAATGGGCAGACCGTCTATCGTGTCGCTATAAAAAAAAGAGCGTGAAAGGAATTGGTG 1199
consensus_7671#1 ------------------------------------------------------------
consensus_7671#0 GGAAC 1204
consensus_7671#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||