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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence
[TGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGATGGTGCGATGGAAATCGAAGCGACAGAAAATGTACACTTCCCATTCCCGGGGAGGGAAAATCCATTCTTTCTGTTTCCTTGCTGTATCTTAGATCCAATTAGATTAGTGGGCCCTCTCACCCTCCTCCTACCAAAAGTATGTTCCAACCAGGCACCGGTTTCGGACTAATGTTTGCTCTGTTTTTCATTGCCTTCTAGTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGC-GGCGAGGGCCTGAAGCTGCAGGTGATGGCGAACGCGAAGGCGTACGAGAGCGAGCAGCTGTTCTTCGAGGAGACGGCCCGGTTGCGGCGCGGCGACATCATCGGCGTGACCGGCGTGCCGGGCA]
[+] EMBL BX616479 [TGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGATGGTGCGATGGAAATCGAAGCGACAGAAAATGTACACTTCCCATTCCCGGGGAGGGAAAATCCATTCTTTCTGTTTCCTTGCTGTATCTTAGATCCAATTAGATTAGTGGGCCCTCTCACCCTCCTCCTACCAAAAGTATGTTCCAACCAGGCACCGGTTTCGGACTAATGTTTGCTCTGTTTTTCATTGCCTTCTAGTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGGCGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGCGGGCGAGGGCC ]
[+] EMBL AGA283964 [ CACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGC GGCGAGGGCCTGAAGCTGCAGGTGATGGCGAACGCGAAGGCGTACGAGAGCGAGCAGCTGTTCTTCGAGGAGACGGCCCGGTTGCGGCGCGGCGACATCATCGGCGTGACCGGCGTGCCGGGCA]
[+] EMBL AGA280973 [ CACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCGAAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCGGCGTCAAGCTGATCTTCTTCGACCTGCGC GGCGAGGGCCTGAAGCTGCAGGTGATGGCGAACGCGAAGGCGTACGAG ]
consensusID : consensus_7686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 497 fasta sequence
[AGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAG-------GGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG]
[+] EMBL AGA285198 [AGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCT ]
[+] EMBL AGA285059 [ GCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAGGGCGGCCGGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGC ]
[-] EMBL AGA283768 [ CTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAG GTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAG GGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG]
[-] EMBL AGA283904 [ GCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTCTTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCGCGGCACCCTCTCCCCCCCACCGGTCACCGGTCGTGCGGACGTGTAG GTGCGTGTGTGTGTGTTTGCGAAAAGTGTGCGAAAAGATGCTGNTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTGACGGCGTGGACGGTGCACCAG GGTTGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAATTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG]
consensusID : consensus_7686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[CACACATACACGTGTACGTCAGTCCGTCCGGCATGGTCGCATGGTAAATCTACGTTAGTGCTTTCTGGGAACGAGCAAGAGCAAAAAAAAGGGAAGGCTGCCACATATATAAATATCGGCATCCGGCGGAAAGCAGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAATGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCG]
[+] EMBL BX606874 [CACACATACACGTGTACGTCAGTCCGTCCGGCATGGTCGCATGGTAAATCTACGTTAGTGCTTTCTGGGAACGAGCAAGAGCAAAAAAAAGGGAAGGCTGCCACATATATAAATATCGGCATCCGGCGGAAAGCAGAAAGCAAGGCAACCGAAACGGTAAATTAAAGTTCTGCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCAAAGCAGGGCGAAGAAAAGCTATCCAAGAATGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGATGGCGGGCAGGTGGACAAGAAGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGAACGAGTACTTCAAGCTGCGCAGTGCGGCCGTCGCCGAGCTGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGTTCAGCGTGACCGTCTCGCTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7686#0 ----TGCCGGCAT-TACTGCCGTCCACCGTGCAGACGCCGCTCGGCACCACCGAGATGGT 55
consensus_7686#2 CACACATACACGTGTACGTCAGTCCGTCCGGCATG-GTCGCATGGTAAATCTACGTTAGT 59
consensus_7686#1 --------------------AGAAAGCAAGGCAAC--CGAAACGGTAAATTAAAGTTC-T 37
* *** ** * * * *
consensus_7686#0 GCGATGGAAATCGAAGCGACAGAAAATGTACACTTCCCATTCCCGGGGAGGGAAAATCCA 115
consensus_7686#2 GCTTTCTGGGAACGAGCAAGAGCAAAAAAAAGGGAAGGCTGCCACATATATAAATATCGG 119
consensus_7686#1 GCTGCCACTGCATCACCTCCATACAAAAAAACAGTACAATGGCTGACGCA-AAGCAGGGC 96
** * * * ** * * * * *
consensus_7686#0 T-TCTTTCTGTTTCCTTGCTGTATCTTAGATCCAAT--TAGATTAGTGGGCCCTCTCACC 172
consensus_7686#2 CATCCGGCGGAAAGCAGAAAGCAAGGCAACCGAAACGGTAAATTAA--AGTTCTGCTGCC 177
consensus_7686#1 GAAGAAAAGCTATCCAAGAAGTAAGTGGGAAACGAATCTCTTTCTCTCTGCTTTCTTTTC 156
* * * * * * * * *
consensus_7686#0 CTCCTCCTACCAAAAGTATGTTCCAACCAGGCACCGGTTTCGGACTAATGTTTGCTCTGT 232
consensus_7686#2 ACTGCATCACCTCCA-TACAAAAAAACAGTACAATGGCT---GACGCAAAGCAGGGCGAA 233
consensus_7686#1 TTTTTCTTGCCTTCTCGCCGTAGCCGTGGCGCG-CGGC-----ACCC-TCTCCCCCCCAC 209
** * ** ** *
consensus_7686#0 TTTTCATTGCCTTCTAGTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAA 292
consensus_7686#2 GAAAAGCTATCCAAGAATGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAA 293
consensus_7686#1 CGGTCACCGGTCGTGCGGACGTGTAGGCCTCGTGTGCGTGTGTGTGTGTTTGCGAAAAGT 269
* * ** ** * * * * * **
consensus_7686#0 AAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGAT--GGCGGGCAGGTGGACAAGA 350
consensus_7686#2 AAGCAGGAAAAGAGCGCGGCCGCGGCCCAGGCCACCGAT--GGCGGGCAGGTGGACAAGA 351
consensus_7686#1 GTGCGAAAAGATGCTGCTGGCGACGGTGCGGCAGCTGGTACGGCGAGCCGGTGTG-ACGG 328
** ** * ** * ** * *** * * * **** ** **** * *
consensus_7686#0 AGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGA-ACGAGTACTTCAAGC-TGCG 408
consensus_7686#2 AGCAGCCGGCCAAGGAGAACCTGGACGAGATTTCGCCGA-ACGAGTACTTCAAGC-TGCG 409
consensus_7686#1 CGTGGACGGTGCACCAGGGT-TGGCGGCGGCCCCACCACTGCCGGCATTACTGCCGTCCA 387
* * *** * ** *** * * * ** * * * * * * * *
consensus_7686#0 CAGTGCGGCCGTCGCCGAGC-TGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGT 467
consensus_7686#2 CAGTGCGGCCGTCGCCGAGC-TGAAGAAGAGCCCGGACACGCACCCGTACCCGCACAAGT 468
consensus_7686#1 CCGTGCAGACGCCGCTCGGCACCACCGAGACGGTGCGATGGAAATCGAAGCGACAGAAAA 447
* **** * ** *** ** * *** * * * ** * * ** **
consensus_7686#0 TCAGCGTGACCGTCTCGCTCGGCGAGTTCATCGAGCGGTACAGCGGGCTGCAGGACGGCG 527
consensus_7686#2 TCAGCGTGACCGTCTCGCTCG--------------------------------------- 489
consensus_7686#1 TTGAGCTGAAGCGCCGGCTCAAAGCCGAAGCGAAGGAAAAGGAAAAGCAG---------- 497
* *** * ****
consensus_7686#0 AAACGCTCGACGATGTGACGGTGAGCGTGGCGGGCCGGGTGCACGCGATCCGCGAGTCCG 587
consensus_7686#2 ------------------------------------------------------------
consensus_7686#1 ------------------------------------------------------------
consensus_7686#0 GCGTCAAGCTGATCTTCTTCGACCTGCGCGGCGAGGGCCTGAAGCTGCAGGTGATGGCGA 647
consensus_7686#2 ------------------------------------------------------------
consensus_7686#1 ------------------------------------------------------------
consensus_7686#0 ACGCGAAGGCGTACGAGAGCGAGCAGCTGTTCTTCGAGGAGACGGCCCGGTTGCGGCGCG 707
consensus_7686#2 ------------------------------------------------------------
consensus_7686#1 ------------------------------------------------------------
consensus_7686#0 GCGACATCATCGGCGTGACCGGCGTGCCGGGCA 740
consensus_7686#2 ---------------------------------
consensus_7686#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||