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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1538 fasta sequence
[AGGGACGGAACACGTGTAAGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGGGAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGTTCTGTACATGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTAAGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGTATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTG-TTTTCATTGTGTTTTCATAAGGGCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGNTTTAAAAG-AACTAAT-AAACCACTGACGAATTGTATCATTTTAAACAAAAAGTGAAACACGTTTTTCCTTTTACACTAATGTGAATGTTTGAAAAATTGACAGGAAATTGGTATAAAGAAAACAATCTCCCTTTTAACATCGTATAACTATCAATAACCCCTTTTTCCCTCTCGCTTTTGATTTCGAAGAACATTAACTAATTGATCTTCGATGATCGCAATCGTGTAGCTTCTACAGTTATTATCCATTATATCACCGACCACAGAGTAATTAGATTTTCACTAGCGTTCATTTAGGTCTTTTCGCCGACACTTGCCGATACACTTGCAAAAAATTAGTTGCAATCGATGAAGGCATAACTCGGCTCAACGCGTTGCACTGCAAACTCTCCCGGAGCTTGATCGAACGGCTGATGATCCGATGCATAGTTGCTTAGCACATCCGGCAAGGACGTGTCGCTCGATGACTCGCCCATCCCCAGCATCACATCCGACCGTGTCTCGTCCAACGTGTCACTCAGCATTGACTCCGGCTGGGTACTCGATCAAATCGTCCCAACTGTTCGTCTCTGTCTGCTCGATTACATTCAAGCTCTCTGGCAGCACGTGTCCCCTCTGCATATGCCGATTGTACCGCCCGAGTGTGCGAAACATTGCATTGCAAATTTCGCACACGTAAGGATACTCGCCCGTATGCGTCATCATGTGTTTCTGTAGCTG]
[+] EMBL BX625892 [AGGGACGGAACACGTGTAAGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGGGAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGTTCTGTACATGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTAAGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTT CGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGTATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTG TTTTCATTGTGTTTTCATAAGGGCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGNTTTAAAAG AACTAAT AAACCACTGACGAAT ]
[+] EMBL BX612331 [ AGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGGGAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGCTCTGTACATGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATA ]
[+] EMBL BM617441 [ ccGGATCGACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCCTTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTAAGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCATAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAG ]
[+] EMBL BM594858 [ ccgGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTCTATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCTTTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCGAACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACTATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAATGTAAAGCTCACCATTTTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGAAAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAACACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGTATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTGTTTTTCATTGTGTTTTCATA ]
[+] EMBL CNS095R8 [ tATAAGGGCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGTTTTAAAAGAAACTAATAAAACCACTGACGAAATGTATCATTTTAAACAAAAAGTGAAACACGTTTTTCCTTTTACACTAATGTGAATGTTTGAAAAATTGACAGGAAATTGGTATAAAGAAAACAATCTCCCTTTTAACATCGTATAACTATCAATAACCCCTTTTTCCCTCTCGCTTTTGATTTCGAAGAACATTAACTAATTGATCTTCGATGATCGCAATCGTGTAGCTTCTACAGTTATTATCCATTATATCACCGACCACAGAGTAATTAGATTTTCACTAGCGTTCATTTAGGTCTTTTCGCCGACACTTGCCGATACACTTGCAAAAAATTAGTTGCAATCGATGAAGGCATAACTCGGCTCAACGCGTTGCACTGCAAACTCTCCCGGAGCTTGATCGAACGGCTGATGATCCGATGCATAGTTGCTTAGCACATCCGGCAAGGACGTGTCGCTCGATGACTCGCCCATCCCCAGCATCACATCCGACCGTGTCTCGTCCAACGTGTCACTCAGCATTGACTCCGGCTGGGTACTCGATCAAATCGTCCCAACTGTTCGTCTCTGTCTGCTCGATTACATTCAAGCTCTCTGGCAGCACGTGTCCCCTCTGCATATGCCGATTGTACCGCCCGAGTGTGCGAAACATTGCATTGCAAATTTCGCACACGTAAGGATACTCGCCCGTATGCGTCATCATGTGTTTCTGTAGCTG]
consensusID : consensus_7701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 999 fasta sequence
[CCGCGCAACAGAGACTCTACGTTTTCCAAAGACTTCTGTTCCAACCGTGTTCCTGCTCATGTCTCCCTCGTACAACCCACCAATAGCGTTTGTGGCGGCGGCTAAACCCATGAAGACCACCTGCCATTTGAGGTCCAAATCGGTGTCGGATGCGGATGCCCCTGCGCTTCGTACAGTGCGAACTAGTCAAACCAGATCATTGTCGGAGGATTTCGTTTTACAATTTTAACAAATTGTGTTTTTGTTCAGTTTTTAAACATTATTTTGTACACAGGCTAGGTTGTCGACCGGTGTCAGATTACTCTTACACGGTTGGCTAGCGTTCGATAAGTTTTAGATAAGTCCGATTTTAAGCTTTGGGGCTAAAGAAGAGATTGGAGAAGCATTTATAAAAAAAAATCTTCCCTTCGTACTCGCTCGATCAATGACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGACTCATGCAAATCATGAGATGAGTTGTAGATAAATCAATACAGTGGCATTAGCAGATCTTTACTAGCCGTACGTATATGCGTGTAAGATTGTCAAGGATCGAAAACAGAACAAAGACGATGGTGGCGTGTTAGCGAATCCAAACACAGGGCCAGACACGGTAGAATACGGTAACGGAGAAGGGGGTACGCATTTGTTGGGTTATGACCAACGTCCTAGAGTAGTAAAATTGTGCTTGGCCCCAAACTTTGGCCCACACCTTTACGCCAAAGTGATCTATTGTAGACTATTTGGAGAGGCATTAAATGAGAAAAGAAATCTTAAGTCTGATGTGTGATGTGCTGTGCTGAGAGGGTCGAGACCCCGGTAGAGGCAGCA-GAATTCAACTGGCCAGTACTACTGCTACACCTACTGTGTGCGATA-GAGTGTGTGAGTTT-GCTTTTAATGCGATGTTGTTCTTTCTATAGGTTTGCAATGTAGAGATTACTGTATAAGGGACCGGAACACGTGTAAGAGTCATACNCACAG]
[+] EMBL BM636182 [CCGCGCAACAGAGACTCTACGTTTTCCAAAGACTTCTGTTCCAACCGTGTTCCTGCTCATGTCTCCCTCGTACAACCCACCAATAGCGTTTGTGGCGGCGGCTAAACCCATGAAGACCACCTGCCATTTGAGGTCCAAATCGGTGTCGGATGCGGATGCCCCTGCGCTTCGTACAGTGCGAACTAGTCAAACCAGATCATTGTCGGAGGATTTCGTTTTACAATTTTAACAAATTGTGTTTTTGTTCAGTTTTTAAACATTATTTTGTACACAGGCTAGGTTGTCGACCGGTGTCAGATTACTCTTACACGGTTGGCTAGCGTTCGATAAGTTTTAGATAAGTCCGATTTTAAGCTTTGGGGCTAAAGAAGAGATTGGAGAAGCATTTATAAAAAAAAATCTTCCCTTCGTACTCGCTCGATCAATGACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGACTCATGCAAATCATGAGATGAGTTGTAGATAAATCAATACAGTGGCATTAGCAGATCTTTACTAGCCGTACGTATATGCGTGTAAGATTGTCAAGGATCGAAAACAGAACAAAGACGATGGTGGCGTGTTAGCGAATCCAAACACAGGGCCAGACACGGTAGAATACGGTAACGGAGAAGGGGGTACGCAT ]
[+] EMBL BX622304 [ GGGGCTAAAGAAGAGATTGGAGAATCATTTATAAAAAAAAATCTTCCCTTCGTACTCGCTCGATCAATGACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGACTCATGCAAATCATGAGATGAGTTGTAGATAAATCAATACAGTGGCATTAGCAGATCTTTACTAGCCGTACGTATATGCGTGTAACATTGTCAAGGATCGAAAACAGAACAAAGACGATGGTGGCGTGTTAGCGAATCCAAACACAGGGCCAGACACGGTAGAATACGGTAACGGAGAAGGGGGTACGCATTTGTTGGGTTATGACCAACGTCCTAGAGTAGTAAAATTGTGCTTGGCCCCAAACTTTGGCCCACACCTTTACGCCAAAGTGATCTATTGTAGACTATTTGGAGAGGCATTAAATGAGAAAAGAAATCTTAAGTCTGATGTGTGATGTGCTGTGCTGAGAGGGTCGAGACCCCGGTAGAGGCAGCA GAATTCAACTGGCCAGTACTACTGCTACACCTACTGTGTGCGATA GAGTGTGTGAGTTT GCTTTTAATGCGATGTTGTTCTTTCTATAGGTTTGCAATGTAGAGATTACTGTATAAGGGACCGGAACACGTGTAAGAGTCATACNCACAG]
[+] EMBL BX628731 [ GTGATGTGCTGTGCTGAGAGGGTCGAGACCCCGGTAGAGGCAGCATCAATTCAACTGGCCAGNACTACTGCTACACCTACTGTGTGCGATATGAGNGTGTGAGTTTCGCTTTTAATGCNATGTTGTTCTTTCTATAGGTTTGCAATGTAGAGATTACTGTATAAGGGA CGGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7701#0 AGGGACGGAACACGTGTAAGAGTCATACGCACAGGAAGGATGACGGTGTACATAGGATGG 60
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 GAAGAGGAACGGGATGATGGATGCTATAAATGTATCATTACACGTTCTGTACATGGATCG 120
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 ACTTTTGGGACTAAGGCAAACTACCACTATAAATGGTGAAAGGAGCGATTGATAGCGCCC 180
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 TTTGCCAAGCCAGGGATAAGGCATAACTGCATGTGAATGGATAAACTTTAAGTATCGCTA 240
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 AGTGAGAGAGTGTCAAGATAACACTACATAACTTATCATAAGTACACGAAACCTGTTCTC 300
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 TATGTGTGTATTTCTGATAGGCATGGATAGCAAACGACACAAAACCCGAACAGTAAAGCT 360
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 TTTAAAACAGCCTTCACACTTCGGCGGCTGCTCGGAACTTCAAATAACGAATCGACCCCG 420
consensus_7701#1 ------------------------------------------------------------
consensus_7701#0 AACTCCTTCACAACAGAGCAACACTGTTACACCACAAATGCTACAAACAAATGTTAAACT 480
consensus_7701#1 -------------------------------------CCGCGCAACAGAGACTCTACGTT 23
** * * * * ** *
consensus_7701#0 ATGAAAGAATCTCTAGCAAAACAGTAAATCTATCACCGTATAAAT-GTAAAGCTCACCAT 539
consensus_7701#1 TTCCAAAGACTTCTGTTCCAACCGTGTTCCTGCTCATGTCTCCCTCGTACAACCCACCAA 83
* ** * *** *** ** ** ** * * *** * * *****
consensus_7701#0 T--TTTTTCAATCAAAAGATAGTGCCGTGGCACCGAGTTACTAACAACAGAAGAACGAGA 597
consensus_7701#1 TAGCGTTTGTGGCGGCGGCTAAACCCATGA----AGACCACCTGCCATTTGAGGTCCAAA 139
* *** * * ** ** ** ** * * ** * * *
consensus_7701#0 AAAACACAGCGATACAGAAACAAAAACGAAACAAAAAGGTTATATAGGACAAAGGAACAA 657
consensus_7701#1 TCGGTGTCG-GATGCGGATGCCCCTGCGCTTCGTACAGTGCGAACTAGTCAAACCAG-AT 197
* *** * ** * ** * * ** * * **** * *
consensus_7701#0 CACACTTTGAAAGAAAAATCTCATTAGGCTTAAGTTATTTGGAGCATTTTCGAAAGCTGT 717
consensus_7701#1 CATTGTCGGAGGATTTCGTTTTAC-AATTTTAACAAATTGTGTTTTTGTTCAGTTTTTAA 256
** * ** * * * * **** *** * * *** *
consensus_7701#0 ATAAGATTTGCTAAAAAGGCAAAACAGACGGATCATTGTTTTCATTGTGTTTTCATAAGG 777
consensus_7701#1 ACATTATTTTGTACACAGGCTAGGTTGTCG-ACCGGTGTCAG-ATTACTCTTACACGGTT 314
* * **** ** * **** * * ** * * *** *** ** **
consensus_7701#0 GCATAATTTTATTTGATTTTGTACATAAATTATAGTGTCTGNTTTAAAAGAACTAATAAA 837
consensus_7701#1 GGCTAGCGTTCGATAAGTTT-TAGATAAGTCCGATTTTAAGCTTTGGGGCTA--AAGAAG 371
* ** ** * * *** ** **** * * * * * *** * ** **
consensus_7701#0 CCACTGACGAATTGTATCATTTTAAACAAAAAGTGAAACACGTTTTTCCTTTTACACTAA 897
consensus_7701#1 AGATTGGAGAAGCAT----TTATAAAAAAAAA-----------TCTTCCCTTCGTACTCG 416
* ** *** * ** **** ***** * **** ** ***
consensus_7701#0 TGTGAATGTTTGAAAAATTGACAGGAAATTGGTATAAAGAA-AACAATCTCCCTTTTAAC 956
consensus_7701#1 CTCGATCAAT---GACACTGACTCGAGGACAGGATTGTGTGCGGCAGTATTCTCGCAGGA 473
** * * * **** ** * ** * ** * * *
consensus_7701#0 ATCGTATAACTATCAATAACCCCTTTTTCCCTCTCGCTTTTGATTTCGAAGAACATTAAC 1016
consensus_7701#1 CTCATGCAA--ATCATGAGATGAGTT---------GTAGATAAATCAATACAGTGGCA-T 521
** * ** **** * ** * * * * * * *
consensus_7701#0 TAATTGATCTTCGATGATCGCAATCGTGTAGCTTCTACAGTTATTATCCATTATATCACC 1076
consensus_7701#1 TAGCAGATCTTTACTAGCCGTACGTATAT-GCGTGTAAGATTGTCAAGGATCGAAA-ACA 579
** ****** * ** * * * ** * ** ** * * ** * **
consensus_7701#0 GACCACAGAGTAATTAGATTTTCACTAGCGTTCATTTAGGTCTTTTCGCCGACACTTGCC 1136
consensus_7701#1 GA--ACAAAGACGATGGTGGCGTGTTAGCG--AATCCAAACACAGGGCCAGACACGGTAG 635
** *** ** * * ***** ** * * *****
consensus_7701#0 GATACACTTGCAAAAAATTAGTTGCA-ATCGATGAAGGCATAACTCGGCTCAACGCGTTG 1195
consensus_7701#1 AATACGGTAACGGAGAAGGGGGTACGCATTTGTTGGGTTATGACCAACGTCCTAGAGTAG 695
**** * * * ** * * * ** * * ** ** ** * ** *
consensus_7701#0 CACTGCAAACTCTCCCGGAGCTTGATCGAACGGCTGATGATCCGATGC-ATAGTTGCTTA 1254
consensus_7701#1 TA----AAATTGTGCTTGGCCCCAAACTT-TGGCCCACACCTTTACGCCAAAGTGATCTA 750
* *** * * * * * * * *** * * ** * *** **
consensus_7701#0 GCACATCCGGCAAGGACGTGTCGCTCGATGACTCGCCCA-TCCCCAGCATCACATCCGAC 1313
consensus_7701#1 TTGTAGACTATTTGGA-GAGGCATTAAATGAGAAAAGAAATCTTAAGTCTGATGTGTGAT 809
* * *** * * * * **** * ** ** * * * **
consensus_7701#0 CGTGTCTCGTCCAACGTGTCACTCAGCATTGACTCCGGCTGGGTACTCGATCAAATCGTC 1373
consensus_7701#1 -GTGCTGTGCTGAGAGGGTCG--AGACCCCGGTAGAGGCAGCAGAATTCAACTGGCCAGT 866
*** * * * *** * * *** * * * * * *
consensus_7701#0 CCAACTGTT-CGTCT-CTGTCTGCTCGATTACATTCAAGCTCTCTGGCAGCACGTGTCCC 1431
consensus_7701#1 ACTACTGCTACACCTACTGTGTGCGATAGAGTGTGTGAGTTTGCTTTTAATGCGATGTTG 926
* **** * * ** **** *** * * ** * ** * **
consensus_7701#0 CTCTGCATATGCCGATTGTACCGCCCGAGTGTGCGAAACATTGCATTGCAAATTTCGCAC 1491
consensus_7701#1 TTCTTTCTATAG-GTTTGCAATGTA-GAGATTACTGTATAAGGGACCGGAA------CAC 978
*** *** * *** * * *** * * * * * * * ** ***
consensus_7701#0 ACGTAAGGATACTCGCCCGTATGCGTCATCATGTGTTTCTGTAGCTG 1538
consensus_7701#1 GTGTAAGAGT-CATACNCACAG------------------------- 999
***** * * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||