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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 972 fasta sequence
[AGGCCAAGAATCGGCACGAGGGTGGCGAGTGATCTGTACAGGTGCATCATCATCATCATCCGCACCATCCGCACTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATAT-GCTACTGTTGGCGGTTTTGGTAGGATTCCATGCAACCGGCAGCAGTGGGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCTGGATGACATGGAGTACGAGCGCGATAACGACGGCGAGTCGCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACCGACCGTACAGATCCCGAACAAGGCCGGCGAGTTTGTCACGATGACGCGCATGGATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCTGGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCNNAAGCGCTGCTGGNCCCAGGAAAACAAGAACGTAATTGCCGTGGATTTGGGGAGCCAAGGGTTGCCAAGCGACGCTTGNGTCTACCCGGGTCGCCCGGCTTACCGTGGTGCCCGGAAAGGTTGGCAAACCTGGTTGGGCGGGACACTGAATCCGACACAATCTCGTTNGGGGCCCCCGGGGGGCCTTCACGGGGCACNCAAGGGGGACCAATTTCGAAGACGCCCAANNGAATTCCGGGGGCATTCTCACATTCANGGGGGGCACACCCAAGGCNCATTAGGNGAGGGGGGGCACAACACATTTTGGGCGGGGGAAAAATTTTTGCCGGGGGCGAAAAACACGGGGGNTANCCCGCAAATCCCNGGGGTTAAAGAATCACG]
[+] EMBL BX467746 [AGGCCAAGAATCGGCACGAGGGTGGCGAGTGATCTGTACAGGTGCATCATCATCATCATCCGCACCATCCGCACTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATAT GCTACTGTTGGCGGTTTTGGTAGGATTCCATGCAACCGGCAGCAGTGGGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCTGGATGACATGGAGTACGAGCGCGATAACGACGGCGAGTCGCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACCGACCGTACAGATCCCGAACAAGGCCGGCGAGTTTGTCACGATGACGCGCATGGATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCTGGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCNNAAGCGCTGCTGGNCCCAGGAAAACAAGAACGTAATTGCCGTGGATTTGGGGAGCCAAGGGTTGCCAAGCGACGCTTGNGTCTACCCGGGTCGCCCGGCTTACCGTGGTGCCCGGAAAGGTTGGCAAACCTGGTTGGGCGGGACACTGAATCCGACACAATCTCGTTNGGGGCCCCCGGGGGGCCTTCACGGGGCACNCAAGGGGGACCAATTTCGAAGACGCCCAANNGAATTCCGGGGGCATTCTCACATTCANGGGGGGCACACCCAAGGCNCATTAGGNGAGGGGGGGCACAACACATTTTGGGCGGGGGAAAAATTTTTGCCGGGGGCGAAAAACACGGGGGNTANCCCGCAAATCCCNGGGGTTAAAGAATCACG]
[+] EMBL BX625322 [ nATCATCCGCACCATCCGCACTGCCGTGACTGTTTCCGTGACTGTCCCCTCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATAT GCTACTGTTGGCGGTTTTGGTTGGATTCCATGCAACCGGCAGCAGTGGGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCTGGATGACATGGAGTACGAGCGCGATAACGACGGCGAGTCGCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACCGACCGTACAGATCCCGAACAAGGCCGGCGAGTTTGTCACGATGACGCGCATGGATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGNTGAGTTCGATCG ]
[+] EMBL BX624755 [ GCACTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATNGCTACTGTTGGCGGTTTTGGTAGGATTCCATGCAACCGGCAGCAGTGGGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCTGGATGACATGGAGTACGAGCGCGATAACGACGGCGAGTCGCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACCGACCGTACAGATCCCGAACAAGGCCGGCGAGTTTGTCACGATGACGCGCATGGATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGANTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCTGGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCG ]
consensusID : consensus_7716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 798 fasta sequence
[CCCCGAGGGTGATCT-GTACAGGTGCATAATCATCATCATCCGCACCATCCGC-A-CTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGG-ATTCC-AT-GCAACC--GGCAG-CAGTG-GGCAGAGCAGCAACGGTGAGGCAGCGGGTGATGATCCCGATCT-GGATG-ACATGGAGTACGAGCGCGATAACGACGGCGAGTC-GCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACC-GACCGTACAGATCCCGAACAAGGCCGGC-GAGTTTGTCACGATGACGCGCATG-GATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCT-GGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCAAAGCGCTGCTGGCCCAGGAAAACAAGAACGTAA-TTGCCGTGGATTGGGAGCAGGGTGCCAGCACGCTGCTCTACCCGGTCGCCCGCTACCGT-GTGCCGAANGTGGCCAACCTGGTGGCGGCACTGATCGACAATCTCGTGGCCGGGCTCGGCCAGGACATCAACCAGATCGGCATCATCGGGCACAGCCTGGGAGCGCACATTGCGGGAATTGCGGCGAAACNGGTA]
[+] EMBL AL931089 [CCCCGAGGGT ATCT GTACAGGTGCATAATCATCATCATCCGCA CATCCGC A CTG CGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGGAATTCCAATGGCAACCTGGGCAGCCAGTGTGGCAGAGCAGCAACGGTGAGGCAGCGGGTGATGAT CCGATCTGGGATGTACATGGAGTACGAGCGCGATAACGACGGCGAGTCTGCTCATCCCCAAAACGGTCGTGGTGCGGTCGGACCTATGCGATCCCGTACCTGACCGTACAGATTCCGAACAAGG CGGCTGAGTTTGTCACGATGACGCGCATGTGATG ]
[+] EMBL BM657293 [ ccGGTGATCT GTACAGGTGCATAATCATCATCATCCGCACCATCCGC A CTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGG ATTCC AT GCAACC GGCAG CAGTG GGCAGAGCAGCAACGGTGAGGCAGCGGGTGATGATCCCGATCT GGATG ACATGGAGTACGAGCGCGATAACGACGGCGAGTC GCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACC GACCGTACAGATCCCGAACAAGGCCGGC GAGTTTGTCACGATGACGCGCATG GATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCTGGGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCAAAGCGCTGCTGGCCCAGGAAAACAAGAACGTAATTTGCCGTGGATTGGGAGCAGGGTGCCAGCACGCTGCTCTACCCGGTCGCCCGCTACCGTGGTGCCGAAGGTGGCCAACCTGGTGGCGGCACTGATCGACAATCTCGTGGC ]
[+] EMBL BX619631 [ GTGATCTCGTACAGGTGCATCATCATCATCATCCGCACCATCCGCNAGCTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGG ATTCC AT GCAACC GGCAG CAGTG GGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCT GGATG ACATGGAGTACGAGCGCGATAACGACGGCGAGTC GCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACC GACCGTACAGATCCCGAACAAGGCCGGC GAGTTTGTCACGATGACGCGCATG GATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTCCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCT GGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCAAAGCGCTGCTGGCCCAGGGAAACAAGAACGTAA TTGCCGTGGna ]
[+] EMBL BX624132 [ CCGCACCATCCGC A CTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGG ATTCC AT GCAACC GGCAG CAGTG GGCAGAGCAGCAACGGTGAGGCAGCGGGTGATGATCCCGATCT GGATG ACATGGAGTACGAGCGCGATAACGACGGCGAGTC GCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACC GACCGTACAGATCCCGAACAAGGCCGGC GAGTTTGTCACGATGACGCGCATG GATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCT GGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCAAAGCGCTGCTGGCCCAGGAAAACAAGAACGTAA TTGCCGTGGATTGGGAGCAGGGTGCCAGCACGCTGCTCTACCCGGTCGCCCGCTACCGT GTGCCGAANGTGGCCAACCTGGTGGCGGCACTGATCGACAATCTCGTGGNCGGGCTCGGCCAGGACATCAACCAGATCGGCATCATCGGGCACAGCCTGGGAGCGCACA ]
[+] EMBL BX622275 [ ACTGTTTCCGTGACTGTCCCCTCGATTCGCTCGGCAGTGAAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTTGG ATTCC AT GCAACC GGCAG CAGTG GGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCT GGATG ACATGGAGTACGAGCGCGATAACGACGGCGAGTC GCTCATCCCCAAACCGGTCGTGGTGCGGTCGGACCTAGGCGATCCCGTACC GACCGTACAGATCCCGAACAAGGCCGGC GAGTTTGTCACGATGACGCGCATG GATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGTACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTAATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCT TGTGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCAAAGCGCTGCTGGCCCAGGAAAACAAGAACGTAA TTGCCGTGGATTGGGAGCAGGGTGCCAGCACGCTGCTCTACCCGGTCGCCCGCTACCGT GTGCCGAANGTGGCCAACCTGGTGGCGGCACTGATCGACAATCTCGTGGCCGGGCTCGGNCAGGACATCAACCAGATCGGCATCATCGGGCACAGTCTGGGGGCGCACATTGCGGGAATTGCGGCGAAACNGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7716#0 AGGCCAAGAATCGGCACGAGGGTGGCGAGTGATCTGTACAGGTGCATCATCATCATCATC 60
consensus_7716#1 --------------------CCCCGAGGGTGATCTGTACAGGTGCATAATCATCATCATC 40
* * ******************* ************
consensus_7716#0 CGCACCATCCGCACTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTG 120
consensus_7716#1 CGCACCATCCGCACTGCCGTGACTGTTTCCGCGACTGTCCCATCGATTCGCTCGGCAGTG 100
************************************************************
consensus_7716#0 AAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGGATTCCATGCAACCGGCA 180
consensus_7716#1 AAATGAAGCCGCACTATATGCTACTGTTGGCGGTTTTGGTAGGATTCCATGCAACCGGCA 160
************************************************************
consensus_7716#0 GCAGTGGGCAGAGCAGCAACGGTGCGGCAGCGGGTGATGATCCCGATCTGGATGACATGG 240
consensus_7716#1 GCAGTGGGCAGAGCAGCAACGGTGAGGCAGCGGGTGATGATCCCGATCTGGATGACATGG 220
************************ ***********************************
consensus_7716#0 AGTACGAGCGCGATAACGACGGCGAGTCGCTCATCCCCAAACCGGTCGTGGTGCGGTCGG 300
consensus_7716#1 AGTACGAGCGCGATAACGACGGCGAGTCGCTCATCCCCAAACCGGTCGTGGTGCGGTCGG 280
************************************************************
consensus_7716#0 ACCTAGGCGATCCCGTACCGACCGTACAGATCCCGAACAAGGCCGGCGAGTTTGTCACGA 360
consensus_7716#1 ACCTAGGCGATCCCGTACCGACCGTACAGATCCCGAACAAGGCCGGCGAGTTTGTCACGA 340
************************************************************
consensus_7716#0 TGACGCGCATGGATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGT 420
consensus_7716#1 TGACGCGCATGGATGTGCAAGAGTGCAAGAGCAATGCCAGCTATTACGAGGCCACCAAGT 400
************************************************************
consensus_7716#0 ACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTA 480
consensus_7716#1 ACGTGCAGTGCTATCTGTACCGGGCGAACGATACGGCAGATCGCCACGAGTTCCACTTTA 460
************************************************************
consensus_7716#0 ATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCTGG 540
consensus_7716#1 ATGGGTTGAGTTCGATCGTTGCCGCCGGTTACAAGCGCACCCTGCCCACAGCCATCCTGG 520
************************************************************
consensus_7716#0 TGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCNNAAGCGCTG 600
consensus_7716#1 TGCACGGGTGGCTCGGCAGTTCGGAATCCGTCGTGATAGACCCGCTCGCCAAA-GCGCTG 579
************************************************** * ******
consensus_7716#0 CTGGNCCCAGGAAAACAAGAACGTAATTGCCGTGGATTTGGGGAGCCAAGGGTTGCCAAG 660
consensus_7716#1 CTGGCCC-AGGAAAACAAGAACGTAATTGCCGTGGATT--GGGAGC---AGGGTGCCAG- 632
**** ** ****************************** ****** ** *****
consensus_7716#0 CGACGCTTGNGTCTACCCGGGTCGCCCGGCTTACCGTGGTGCCCGGAAAGGTTGGCAAAC 720
consensus_7716#1 -CACGCT--GCTCTACCCGG-TCGCCCG--CTACCGTG-TGCC--GAANG--TGGCCAAC 681
***** ********* ******* ******* **** *** * **** ***
consensus_7716#0 CTGGTTGGGCGGGACACTGAATCCGACACAATCTCGTTNGGGGCCCCCGGGGGGCCTTCA 780
consensus_7716#1 CTGGT--GGCGG--CACTGA--TCGAC--AATCTCGTGGCCGGGCTCGGCCAGGACATCA 733
***** ***** ****** **** ******** ** * * * ** * ***
consensus_7716#0 --CGGGGCA-CNCAAGGGGGACCAATTTCGAAG-ACGC-CCAANNGAATTCCGGGGGCAT 835
consensus_7716#1 ACCAGATCGGCATCATCGGGCACAGCCTGGGAGCGCACATTGCGGGAATTGCGGCGAAAC 793
* * * * * *** ** * * ** * * ***** *** * *
consensus_7716#0 TCTCACATTCANGGGGGGCACACCCAAGGCNCATTAGGNGAGGGGGGGCACAACACATTT 895
consensus_7716#1 NGGTA------------------------------------------------------- 798
*
consensus_7716#0 TGGGCGGGGGAAAAATTTTTGCCGGGGGCGAAAAACACGGGGGNTANCCCGCAAATCCCN 955
consensus_7716#1 ------------------------------------------------------------
consensus_7716#0 GGGGTTAAAGAATCACG 972
consensus_7716#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||