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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1267 fasta sequence
[AGTGATCTGTTTGTCAAGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATAAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGATCGGTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTTTGTTACTAGTATGTAAAAAAAACAACAATACTTTCCCAAGGTAGTGTACACAAATTAAAGCCGTAAACTTTTGTATTATGAAATGTTGTTTGTTTCCGATTGGTTCCCAAATTAAACCGTTCTCGGAGACAACTACAAACGATCTTGTAGCACTGGTGCGCAGGTTCCGAATGTAATATTTTCACAACTTTTTGGCTGGTTCACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA-CTGTGAGTACTGATCACATGATCTTGTTACGG-CAGCTGCAAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTGCGGTTAATCAATGTAATA-GTTGGTATCAAGC-AACCAA-TTCAATGTTCTTATCGCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAA-TTGTACGACGAGATCTTTCCGAAGAAAAGGTTCTTG-TTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTTAACCGT-CAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAA---CCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATAACGTATTGAAACTGTAAAACAATTAGAATATTTAAGTGACAATTCTAAAACTATGTTACGGTATCGCAATAAAAACAAAAAGTCGTATGAAACCTATCAAAATTNAAACAACAAGGCAGCATGTGC]
[+] EMBL BX625973 [AGTGATCTGTTTGTCAAGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATAAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGATCGGTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTTTGTTACTAGTATGTAAAAAAAACAACAATACTTTCCCAAGGTAGTGTACACAAATTAAAGCCGTAAACTTTTGTATTATGAAATGTTGTTTGTTTCCGATTGGTTCCCAAATTAAACCGTTCTCGGAGACAACTACAAACGATCTTGTAGCACTGGTGCGCAGGTTCCGAATGTAATATTTTCACAACTTTTTGGCTGGTTCACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTT TTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCAAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTANAATACGGTCATGAACTTACCTGTTCATAGCGNGCGGTTAATCAATGTAATA GTTGGTATCAAGC AACCAA TTCAATGGTC ]
[+] EMBL BM636610 [ ccgGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTTTGTTACTAGTATGT AAAAAAACAACAATACTTTCCCAAGGTAGTGTACACAAATTAAAGCCGTAAACTTTTGTATTATGATATGTTGTTTGTTTCCGATTGGTTCCCAAATTAAACCGTTCTCGGAGACAACTACAAACGATCTTGTAGCACTGGTGCGCAGGTTCCGAATGTAATATTTTCACAACTTTTTGACTGGTTCACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTT TTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTAGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCA ]
[+] EMBL BX615696 [ CACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGATTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCAAAGTATTTAGTATAGTATGAATTGGAAAGAACTCTGAGTCGTTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTGCGGTTAATCAATGTAATA GTTGGTATCAAGC AACCAA TTCAATGTTCTTATCCCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAA TTGTACGACGAGATCTTTCCGAAGAAAAGGTTCTTG TTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTTAACCGT CAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAA CCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATAACGTATTGA ]
[+] EMBL BM575634 [ ccgCTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGG ATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTATACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCAAAGTATTCAGTGCAGTATGGATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTACCGTCAATCAATGTAATA GTTGGTATCAAGC AACCAA TTCAATGTTCTTATCGCGGTGGTGTACCTAATCTACAAGATCGTTCTGGAA TTGTACGACGAGATCTTTCCGAAGAAAAGGTT TTT TTTTGTCTTAGTTTGGTTTTAGTTTAGCGTATTTAACCGT CAGGGGGTACCATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAAAACCCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATAT ]
[+] EMBL BM593455 [ ccgCTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTACAGGTTGGTCTTCTTCAGTCGG ATACCTTTGTCATTTATTTTTGTCGTATTTCCTACAC ]
[-] EMBL BX466836 [ nganATATCTGTGAGTACTGATCACATGATCTTGTTACGGTCAGCTGCGAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTCCGGTTAATCAATGTAATACGTTGGTATCAAGCGAACCAAGTTCAATGTTCTTATCGCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAACTTGTACGACGAGATCTTTCCGAAGAAAAGGTTCTTGCTTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTTAACCATCCAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAA CCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATAACGTATTGAAACTGTAAAACAATTAGAATATTTAAGTGACAATTCTAAAACTATGTTACGGTATCGCAATAAAAACAAAAAGTCGTATGAAACCTATCAAAATTNAAACAACAAGGCAGCATGTGC]
consensusID : consensus_7726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[TGCTCGAGCAGAATCGCCCCGAGGTTAATATTTTCCCTCTTTTATCTGCAGATGCAGCGAACATTTTAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGAACGGAGTAGTCCGGGCGTGAGTGATCTGTTTGTCAACGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATACAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGCATACGGCTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTACATAGTTACTAGTATGTNACCAACAAAACAACAATACTTTCCCAAGGTAGTGTACCACAAATTAAAAGCCGTAAACTNNTCTGTATTATGAACATGTNAGGTCCTGTTCACCGGATATGGGTTCCCCAAATTAACACCGTATCTCGGAGACAATTACCAAAACNGATCTTGTAGCNACTTGGTTGCCGCAGGGTTCCGGAACTGTAATATTTTCCACACAAACTTT]
[+] EMBL AL697266 [TGCTCGAGCAGAATCGCCCCGAGGTTAATATTTTCCCTCTTTTATCTGCAGATGCAGCGAACATTTTAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGAACGGAGTAGTCCGGGCGTGAGTGATCTGTTTGTCAACGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATACAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGCATACGGCTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTACATAGTTACTAGTATGTNACCAACAAAACAACAATACTTTCCCAAGGTAGTGTACCACAAATTAAAAGCCGTAAACTNNTCTGTATTATGAACATGTNAGGTCCTGTTCACCGGATATGGGTTCCCCAAATTAACACCGTATCTCGGAGACAATTACCAAAACNGATCTTGTAGCNACTTGGTTGCCGCAGGGTTCCGGAACTGTAATATTTTCCACACAAACTTT]
consensusID : consensus_7726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[GATCGCNGAGGTTAAGAGCGAAAAATGGTTGCTCCGACAGCCTGAGCGGATCGGGCAATGAGAACGAGAAGCGCAGTAGCAGTTTGCGGCGCGAACGGGATTCGCCCAGCCACAACAACACAAGCAGCAATGGCAACTCGCGCACCAACAGTATTACGAATGTAAATAACAACTCCAGCAAAAGCTCGAGTCGATCGTCCTCCACGACGACGCCAACTACGACGACGACGTCAACAAACAGTGGTTGTCTTAAGGCAATTATTTTCCCTCTTTTATCTGAGATGCAGCGAAATTATAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGGAACGGAGTAGATCCGGGCGTGAGTGATCTGGCGTGAATGGAACATCATGCACAAGCTTGTACCCGGTTTCTGCGAGCACGCGAATCAATACGCTTATNGATAAACGTGACACGTGATTCCAAGAGTAAAGCGATNAAAAGGCGGTAAACAACGGAATTGGATGGGGTGTGGGTTGTGGAGCAAGGAGTGCAATA]
[+] EMBL AL929699 [GATCGCNGAGGTTAAGAGCGAAAAATGGTTGCTCCGACAGCCTGAGCGGATCGGGCAATGAGAACGAGAAGCGCAGTAGCAGTTTGCGGCGCGAACGGGATTCGCCCAGCCACAACAACACAAGCAGCAATGGCAACTCGCGCACCAACAGTATTACGAATGTAAATAACAACTCCAGCAAAAGCTCGAGTCGATCGTCCTCCACGACGACGCCAACTACGACGACGACGTCAACAAACAGTGGTTGTCTTAAGGCAATTATTTTCCCTCTTTTATCTGAGATGCAGCGAAATTATAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGGAACGGAGTAGATCCGGGCGTGAGTGATCTGGCGTGAATGGAACATCATGCACAAGCTTGTACCCGGTTTCTGCGAGCACGCGAATCAATACGCTTATNGATAAACGTGACACGTGATTCCAAGAGTAAAGCGATNAAAAGGCGGTAAACAACGGAATTGGATGGGGTGTGGGTTGTGGAGCAAGGAGTGCAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7726#0 ------------------------------------------------------------
consensus_7726#1 TGCTCGAGCAGAATCGCCCCGAGGTTAATATTTTCCCTCTTTTATCTGCAGATGCAGCGA 60
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 ------------------------------------------------------------
consensus_7726#1 ACATTTTAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGAACG 120
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 ----------------AGTGATCTGTTTGTCAA-GGAAATCATCCACAAGCTTGTGCCCG 43
consensus_7726#1 GAGTAGTCCGGGCGTGAGTGATCTGTTTGTCAACGGAAATCATCCACAAGCTTGTGCCCG 180
consensus_7726#2 ----------------------------GATCGCNGAGGTTAAGAGCGAA-----AAATG 27
* ** * * * * *
consensus_7726#0 GTTTCTCCGAGA-CGCGAATCAATAAGCTTATAGATA-AAGTGACACGGTAGGTTCTGTT 101
consensus_7726#1 GTTTCTCCGAGA-CGCGAATCAATAAGCTTATAGATACAAGTGACACGGTAGGTTCTGTT 239
consensus_7726#2 GTTGCTCCGACAGCCTGAGCGGATCGGGCAATGAGAACGAGAAGCGCAGTAG----CAGT 83
*** ****** * * ** ** * ** * ** * * **** *
consensus_7726#0 CCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCG---ATCGGTGTGGA 158
consensus_7726#1 CCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGCATACGGCTGTGGA 299
consensus_7726#2 TTGCGGCGCGAACGGGATTCGCCCAGCCACA-ACAACACAAGCAGCAATGGCAACTCGCG 142
** * ***** * * * * ** * ** ** ** *
consensus_7726#0 TGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGT---TTGTTAC 215
consensus_7726#1 TGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTACATAGTTAC 359
consensus_7726#2 CAC-CAACAGTATTACGAATGTAAATAACAACTCCAGCAAAAGCTCGAGTCGATCGTCCT 201
* * * *** ** ** ** *** * ** * **
consensus_7726#0 TAGTATGTAA---AAAAAACAACAATACTTTCCCAAGGTAGTGTAC-ACAAATTAAA-GC 270
consensus_7726#1 TAGTATGTNACCAACAAAACAACAATACTTTCCCAAGGTAGTGTACCACAAATTAAAAGC 419
consensus_7726#2 CCACG-ACGACGCCAACTACGACGACGACGTCAACAAACAGTG----GTTGTCTTAAGGC 256
* * ** ** * ** * **** * ** **
consensus_7726#0 CGTAAACTTTT--GTATTATG-AA-ATGTTG---TTTGTTT-CCG---ATTGGTTCCC-A 318
consensus_7726#1 CGTAAACTNNTCTGTATTATG-AACATGTNAGGTCCTGTTCACCGGATATGGGTTCCCCA 478
consensus_7726#2 AATTATTTTCCCTCTTTTATCTGAGATGCAG---CGAAATTATAA--CAGTGGTTCCG-A 310
* * * * **** * *** * * ****** *
consensus_7726#0 AATTAA-ACCGT-TCTCGGAGACAACTACAAA---CGATCTTGTAGCA--CTGGTG--CG 369
consensus_7726#1 AATTAACACCGTATCTCGGAGACAATTACCAAAACNGATCTTGTAGCNACTTGGTTGCCG 538
consensus_7726#2 CATGGGAGACCTACGGCTG-GCCTTCGAGAGCGCCGGAACGGAGTAGATCCGGGCGTGAG 369
** * * * * * * * ** * ** *
consensus_7726#0 CAGG-TTCCGAA--TGTAATATTTTC---ACAACTTTTTGGCTGGTTC--ACTAATACTT 421
consensus_7726#1 CAGGGTTCCGGAACTGTAATATTTTCCACACAAACTTT---------------------- 576
consensus_7726#2 TGATCTGGCGTGAATGGAACATCATGC--ACAAGCTTGTACCCGGTTTCTGCGAGCACGC 427
* ** ** ** ** * **** **
consensus_7726#0 CTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAAC 481
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 GAATCAATACGCT-TATNGATAAACGTGACACGTGATTCCAAGAGTAAAGCGATNAAAAG 486
consensus_7726#0 ACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAG 541
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 GCGGT--AAACAACGGAATTGGATGGGGTGTG---GGTTGTGGAGCAAGGAGTGCAATA- 540
consensus_7726#0 TCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACT 601
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 TTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTT 661
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 GTGTTTTGTACCAAGAGTGAATACTGTGAGTACTGATCACATGATCTTGTTACGGCAGCT 721
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 GCAAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCAT 781
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 GAACTTACCTGTTCATAGCGTGCGGTTAATCAATGTAATAGTTGGTATCAAGCAACCAAT 841
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 TCAATGTTCTTATCGCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAATTGTACGACG 901
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 AGATCTTTCCGAAGAAAAGGTTCTTGTTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTT 961
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 AACCGTCAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAACCC 1021
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 ATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTT 1081
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 CTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATA 1141
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 ACGTATTGAAACTGTAAAACAATTAGAATATTTAAGTGACAATTCTAAAACTATGTTACG 1201
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 GTATCGCAATAAAAACAAAAAGTCGTATGAAACCTATCAAAATTNAAACAACAAGGCAGC 1261
consensus_7726#1 ------------------------------------------------------------
consensus_7726#2 ------------------------------------------------------------
consensus_7726#0 ATGTGC 1267
consensus_7726#1 ------
consensus_7726#2 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||