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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1180 fasta sequence
[CCCCGAGCTGGACAATCACTGGGCGTTGCGCGACTTTGCCGCCCGGCTGATGGCACAGATTTGTAAAACCTTCAACACCTCCACGAACAATCTGCAAACGCGTGTGACGCGGCTCTTCAGTGCGGCACTGCAAAACGATAAAACGCCACTGTCGTCCATGTACGGCGCGCTGCAGGGTCTGTCCGAGCTGGGCACGGAGGTGACGAAGGTGTTCATCATACCACGTCTCAAGTTCATCTCCGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAATTGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTTGCGAAATCCACCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGC-TTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGAAAAAGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGACGACCTCTCGCATTTGGAATGAGATGNTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTT]
[+] EMBL CNS08DWE [CCCCGAGCTGGACAATCACTGGGCGTTGCGCGACTTTGCCGCCCGGCTGATGGCACAGATTTGTAAAACCTTCAACACCTCCACGAACAATCTGCAAACGCGTGTGACGCGGCTCTTCAGTGCGGCACTGCAAAACGATAAAACGCCACTGTCGTCCATGTACGGCGCGCTGCAGGGTCTGTCCGAGCTGGGCACGGAGGTGACGAAGGTGTTCATCATACCACGTCTCAAGTTCATCTCCGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAATTGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTTGCGAAATCCACCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGC TTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGAAAAAGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAG ]
[+] EMBL CNS08K1Q [ TCTCCGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAATTGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTTGCGAAATCCACCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGAACGCCACATCCATTACGGT ]
[+] EMBL BX624093 [ CCCGATCTGGTGGAAGAGTACAAGCGGGATTACGGCTGC TTGGGGCAAACGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGGCGGGTGGCTCATCGGCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCG GGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGACGACCTCTCGCATTTGGAATGAGATGNTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTT]
consensusID : consensus_7749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence
[ACGTGCTACTATTTTTTTCTACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTGGAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTAACTGCAGTCCGTTCAGTTCAATTTTCGGGTCCGAACTCCGAAAACTTGTCATGCGATGAAATAAAACGTGTACATCGGT]
[-] EMBL CNS08DWF [ACGTGCTACTATTTTTTTCTACACGGTAGTCCTGACGGCAACACCCTCCAGGCCCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGCGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTGGAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTAACTGCAGTCCGTTCAGTTCAATTTTCGGGTCCGAACTCCGAAAACTTGTCATGCGATGAAATAAAACGTGTACATCGGT]
[+] EMBL BX627886 [ TACAGCCTCGATACAGCGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTGGCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAACATAAACGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTGGAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTAACTGC ]
[-] EMBL CNS08K1R [ CGTACTAAACACCGGCAGTCAGGCGTCCCAACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAA ]
consensusID : consensus_7749#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[AATCGCCACGAGGTGTAAACTTTTGCGAAATCCACCCGATCTTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAACGTTGCACCAGTGCAGTGGTGAAGCACGGTCGGCATCGCCCTCNTCCGGTGCTGGTGGGGCGGGTGTGCTCATCGGCCTCTAGTACTACGCCATCGACCGGCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGGTAGTCCTGACGGCAACAGCCCTCCAGGCCCCAAAGCACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGGTACAGGCTCGATACAGNGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACGTAAACACCGGCAGTCAGGCGTCCCAACCACCCCGAGCAAAAGTTTGTGAGTAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTAGCATGCGGGACGCGTACAAGCCGAGCCGGTGCAANTTCAGGGCCAACATGATTNNACGGCTG]
[+] EMBL BX469223 [AATCGCCACGAGGTGTAAACTTTTGCGAAATCCACCCGATCTTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAACGTTGCACCAGTGCAGTGGTGAAGCACGGTCGGCATCGCCCTCNTCCGGTGCTGGTGGGGCGGGTGTGCTCATCGGCCTCTAGTACTACGCCATCGACCGGCACATCCATTACGGTTAGCACGAGCAACAATAGCAGCAACACGGGTAGTCCTGACGGCAACAGCCCTCCAGGCCCCAAAGCACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGGTACAGGCTCGATACAGNGCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACGTAAACACCGGCAGTCAGGCGTCCCAACCACCCCGAGCAAAAGTTTGTGAGTAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTAGCATGCGGGACGCGTACAAGCCGAGCCGGTGCAANTTCAGGGCCAACATGATTNNACGGCTG]
consensusID : consensus_7749#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence
[GTGGGGCGGGTGGCTCATCGGCGTCTAGTACTACGCAATCGACGGCGACATCGATAACGGGTAGCACGAGCATCATTAGCAGCATCACG]
[+] EMBL BX613073 [GTGGGGCGGGTGGCTCATCGGCGTCTAGTACTACGCAATCGACGGCGACATCGATAACGGGTAGCACGAGCATCATTAGCAGCATCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 CCCCGAGCTGGACAATCACTGGGCGTTGCGCGACTTTGCCGCCCGGCTGATGGCACAGAT 60
consensus_7749#1 ------------------------------------------------------------
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 TTGTAAAACCTTCAACACCTCCACGAACAATCTGCAAACGCGTGTGACGCGGCTCTTCAG 120
consensus_7749#1 ------------------------------------------------------------
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 TGCGGCACTGCAAAACGATAAAACGCCACTGTCGTCCATGTACGGCGCGCTGCAGGGTCT 180
consensus_7749#1 ------------------------------------------------------------
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 GTCCGAGCTGGGCACGGAGGTGACGAAGGTGTTCATCATACCACGTCTCAAGTTCATCTC 240
consensus_7749#1 -------ACGTGCTACTATTTTTTTCTACACGGTAGTCCTGACGGCAACACCCTCCAGGC 53
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 CGAGCGCGTGGAACCATTGCTGCAGGGCATCACTAGCAACATTAGCAATACGGATAAAAT 300
consensus_7749#1 CCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGC 113
consensus_7749#2 ------------------------------------AATCGCCACGAGGTGTAAACTTTT 24
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 TGCTGCCGGACACATACGAGCGATACTGCAGAAGGGCGTCCCGCCGATACTGAAAACTTT 360
consensus_7749#1 GCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCCC 173
consensus_7749#2 GCGAAATCCACCCGATCTTGGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAA 84
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 GCGAAATCCACCCGATCT-GGTGGAAGAGTACAAGCGGGATTACGGCTGCTTGGGGCAAA 419
consensus_7749#1 AACCACCCCAGCAAAAGTTTGTGATAGTGCCCCAGCGTGCTCAAACGCCGTCCCCATCTC 233
consensus_7749#2 CGTTGCACCAGTGCAGTGGTGAAGCACGGTCGGCATCGCCCTCNTCCGGTGCTGGTGGGG 144
consensus_7749#3 ------------------------------------------------------GTGGGG 6
consensus_7749#0 CGTTGCACCAGGCAGTGGTGAAGGCACGGTCGGCATCGCCCTCGTCCGGTGCTGGTGGGG 479
consensus_7749#1 AAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAGCGG 293
* **
consensus_7749#2 CGGGTGTGCTCATCG---GCCTCTAGTACTACGCCATCGACCGGCACATCCATTACGGTT 201
consensus_7749#3 CGGGTG-GCTCATCG---GCGTCTAGTACTACGCAATCGACGGCGACATCGATAACGGGT 62
consensus_7749#0 CGGGTG-GCTCATCG---GCCTCTAGTACTACGCCATCGACCGCCACATCCATTACGGTT 535
consensus_7749#1 CCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGA-ACCGGTGACTGGC 352
* * * ** ** * ** * ** ** * * * * * ** *
consensus_7749#2 AGCACGAGCAA--CAATAGCAGCAACACGGGTAGTCCTGACGGCAACAGCCCTCCAGGCC 259
consensus_7749#3 AGCACGAGCAT--CATTAGCAGCATCACG------------------------------- 89
consensus_7749#0 AGCACGAGCAA--CAATAGCAGCAACACGG-TAGTCCTGACGGCAACA--CCCTCCAGGC 590
consensus_7749#1 AGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCGGT 412
*** **** ** * **
consensus_7749#2 CCAAAGCACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGGTACAGGCTCGATACAGN 319
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 CCCAAACACCGCAAGCTATTTCGGCGGCCAAAACGATTGCCGCTACAGCCTCGATACAGC 650
consensus_7749#1 ACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTAAC 472
consensus_7749#2 GCCCCGGAACGGCAGCGGGTGGTGGCGTGGCCGTACGTAAACACCGGCAGTCAGGCGTCC 379
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 GCCCCGGAACGGCAGCGAAAAAGTGGCGTGGCCGTACTAAACACCGGCAGTCAGGCGTCC 710
consensus_7749#1 ATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGCAC 532
consensus_7749#2 CAACCACCCCGAGCAAAAGTTTGTGAGTAGTGCCCCAGCGTGCTCAAACGCCGTCCCCAT 439
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 CAACCACCCC-AGCAAAAGTTTGTGA-TAGTGCCCCAGCGTGCTCAAACGCCGTCCCCAT 768
consensus_7749#1 GAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGATGACCTCTCGCATTTG 592
consensus_7749#2 CTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTAGCA 499
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 CTCAAGACGATTTTGTAGGTCCCATCATACAGCGCCAGGGCAGCGTATCGGGTGGTGCAG 828
consensus_7749#1 GAATGAGATGTTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTATAGTGTGGTA 652
consensus_7749#2 TGCGGGACGCGTACAAGCCGAGCCGGTGCAANTTCAGGGCCAACATGATTNNACGGCTG- 558
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 CGGCCGCTACAACCACCGTGCAAATTCAGCCCAACATGATTAAGCTGGAACCGGTGACTG 888
consensus_7749#1 ACTGCAGTCCGTTCAGTTCAATTTTCGGGTCCGAACTCCGAAAACTTGTCATGCGATGAA 712
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 GCAGCGGCAGCATGGCACCGATGACGTCATCAACGAACACGAGCGCACCACCAAGCAGCG 948
consensus_7749#1 ATAAAACGTGTACATCGGT----------------------------------------- 731
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 GTACGGCAATCGGCCAGAAGGTGGTTATCATAAACCAAACCCAGACCGGACCGGCTGCTA 1008
consensus_7749#1 ------------------------------------------------------------
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 ACATAATCGCCAAACCGACGGTTTTCCTTTCCTCGGGCTCGTCCGGAGGTAACAATGGGC 1068
consensus_7749#1 ------------------------------------------------------------
consensus_7749#2 ------------------------------------------------------------
consensus_7749#3 ------------------------------------------------------------
consensus_7749#0 ACGAAGAGATTCACGAAGATATCATCCAGGTTCCGCCCGAACTGGACGACCTCTCGCATT 1128
consensus_7749#1 ------------------------------------------------------------
consensus_7749#2 ----------------------------------------------------
consensus_7749#3 ----------------------------------------------------
consensus_7749#0 TGGAATGAGATGNTTGCTGGGTAAAGTGATGAAGCAACAGCTGTATGTATTT 1180
consensus_7749#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||